Glom10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Glom10 (Glomerulus QTL 10) Rattus norvegicus

Symbol: Glom10
Name: Glomerulus QTL 10
RGD ID: 1598842
Also known as: GIS-m2
Trait: kidney glomerulus morphology trait   (VT:0005325)    
Measurement Type: index of glomerular damage   (CMO:0001135)    
LOD Score: 3.4
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0111 - 33,867,429RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0111 - 37,535,625RGDRnor5.0
RGSC_v3.4111 - 35,465,693RGDRGSC3.4
RGSC_v3.1110 - 35,465,693RGD
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
SR/JrHsd  (IEA)
SS/JrHsd  (IEA)

References

References - curated
1. Herrera VL, etal., Physiol Genomics. 2006 Aug 16;26(3):172-9. Epub 2006 May 23.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619899Setd4SET domain containing 4113378186933803121Rat
2286Cbr1carbonyl reductase 1113381304133815418Rat
2935Itsn1intersectin 1113194311932069249Rat
3775Hspa13heat shock protein family A (Hsp70) member 13111414651514160697Rat
3367Pou1f1POU class 1 homeobox 11126456592662581Rat
2956Kcne1potassium voltage-gated channel subfamily E regulatory subunit 1113249826032511202Rat
2283Runx1RUNX family transcription factor 1113276514733003061Rat
2139Appamyloid beta precursor protein112442501324641872Rat
61941Robo1roundabout guidance receptor 111907929110146302Rat
727938Clic6chloride intracellular channel 6113265565332698004Rat
621241Adamts1ADAM metallopeptidase with thrombospondin type 1 motif, 1112534211925350938Rat
620926Samsn1SAM domain, SH3 domain and nuclear localization signals, 1111425208814405825Rat
2732Grik1glutamate ionotropic receptor kainate type subunit 1112781195428213940Rat
620167Robo2roundabout guidance receptor 2111106286612618793Rat
621379Atp5poATP synthase peripheral stalk subunit OSCP113208160632087918Rat
621129Olig1oligodendrocyte transcription factor 1113142837731430519Rat
727896Scaf4SR-related CTD-associated factor 4113037171330428073Rat
621376Atp5pfATP synthase peripheral stalk subunit F6112428680624294419Rat
621383Kcne2potassium voltage-gated channel subfamily E regulatory subunit 2113243478632447264Rat
621530Slc5a3solute carrier family 5 member 3113222936632231812Rat
3731Sod1superoxide dismutase 1113036328230368858Rat
1303131Ncam2neural cell adhesion molecule 2111966992220705063Rat
69434Synj1synaptojanin 1113110578431181573Rat
1306823DonsonDNA replication fork stabilization factor DONSON113183460831847751Rat
68389Epha3Eph receptor A311421253783037Rat
619794CxadrCXADR, Ig-like cell adhesion molecule111682626916873564Rat
735196Adamts5ADAM metallopeptidase with thrombospondin type 1 motif, 5112541117425456639Rat
1307462Cldn17claudin 17112847718428478360Rat
1305195Rbm11RNA binding motif protein 11111400570414015723Rat
1307455Tiam1TIAM Rac1 associated GEF 1112993108330061173Rat
1305062Rwdd2bRWD domain containing 2B112708570827094364Rat
1304621Urb1URB1 ribosome biogenesis homolog113091674030977423Rat
1308575Cldn8claudin 8112852564128527890Rat
1306693Bach1BTB domain and CNC homolog 1112736491327398713Rat
1307192Usp16ubiquitin specific peptidase 16112710121327130345Rat
1307569Eva1ceva-1 homolog C113100169731075784Rat
71083Htr1f5-hydroxytryptamine receptor 1F1119821131983513Rat
1306781Chmp2bcharged multivesicular body protein 2B1126664052692213Rat
1311088Krtap15-1keratin associated protein 15-1112878044628781270Rat
1311046Tmprss15transmembrane serine protease 15111756159117684903Rat
1310802GabpaGA binding protein transcription factor subunit alpha112429384524322822Rat
1310778Mis18aMIS18 kinetochore protein A113088023130893262Rat
1333570Olr1526-psolfactory receptor pseudogene 1526111790135317902260Rat
1308321Zfp654zinc finger protein 6541118313781895814Rat
1309003Usp25ubiquitin specific peptidase 25111543608015558646Rat
1309013SonSON DNA and RNA binding protein113180659831837769Rat
1309885Chodlchondrolectin111753798017560305Rat
1305678Cadm2cell adhesion molecule 21141750784397335Rat
1305452Cct8chaperonin containing TCP1 subunit 8112713017227141881Rat
1309968Gbe11,4-alpha-glucan branching enzyme 11172101697485895Rat
1333970Olr922olfactory receptor 922112306247023065217Rat
1308717Gartphosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase113178047731805728Rat
1310219Cryzl1crystallin zeta like 1113184774131893042Rat
1308129Cggbp1CGG triplet repeat binding protein 11118961661915603Rat
1306954Cfap298cilia and flagella associated protein 298113109410331103487Rat
1307561Tmem50btransmembrane protein 50B113171944131752276Rat
1310648Mrapmelanocortin 2 receptor accessory protein113090473330915225Rat
1307098Olig2oligodendrocyte transcription factor 2113138951431392890Rat
1310162Lipilipase I111396024613999869Rat
2226Btg3BTG anti-proliferation factor 3111687364216889100Rat
1307532Ifngr2interferon gamma receptor 2113169433931712611Rat
1305399Ifnar1interferon alpha and beta receptor subunit 1113164040731666839Rat
1560879Krtap7-1keratin associated protein 7-1112964093529641551Rat
1311238Ltn1listerin E3 ubiquitin protein ligase 1112702332827080575Rat
1359578Cyyr1cysteine and tyrosine rich 1112496793625078740Rat
1563888RGD1563888similar to DNA segment, Chr 16, ERATO Doi 472, expressed111707329617120235Rat
1562726RGD1562726similar to Putative protein C21orf62 homolog113122056631238495Rat
1559597Krtap13-2keratin associated protein 13-2112873916528740309Rat
1560030Vgll3vestigial-like family member 31131195093168883Rat
1561692Jam2junctional adhesion molecule 2112423531024285279Rat
1562771RGD1562771similar to RIKEN cDNA 2310057N15112877112428771642Rat
1565091Hunkhormonally upregulated Neu-associated kinase113055014130663465Rat
1359320MGC95208similar to 4930453N24Rik protein1118142941818942Rat
1564302Krtap14keratin associated protein 14112877676128777603Rat
1359474Map3k7clMAP3K7 C-terminal like112720817727251802Rat
1311682Krtap14lkeratin associated protein 14 like112873548828736000Rat
1560373Il10rbinterleukin 10 receptor subunit beta113156030131582457Rat
1562102Csnka2ipcasein kinase 2 subunit alpha' interacting protein1114359301571925Rat
1561853RGD1561853similar to SET domain-containing protein1128127332815779Rat
1359589Dnajc28DnaJ heat shock protein family (Hsp40) member C28113177016431772984Rat
1311843N6amt1N-6 adenine-specific DNA methyltransferase 1112700433527016690Rat
1311850Nrip1nuclear receptor interacting protein 1111465822514742478Rat
631338Rcan1regulator of calcineurin 1113253968932620274Rat
1560327Fam243afamily with sequence similarity 243 member A113246699832469566Rat
1585829LOC680960similar to ribosomal protein L27111785386717854268Rat
1583562LOC681129triosephosphate isomerase 1 pseudogene112225108122251993Rat
1584739Paxbp1PAX3 and PAX7 binding protein 1113118445631213891Rat
1586137LOC363737hypothetical LOC363737112849027028492921Rat
1586138LOC363734similar to pescadillo homolog 1, containing BRCT domain112172755821729545Rat
1586139LOC363732similar to sorbitol dehydrogenase111624200716244203Rat
1586140LOC363725hypothetical LOC3637251152991275299905Rat
1586142LOC363718similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G1117730301773444Rat
1583675LOC679813similar to histone deacetylase 11127694802776760Rat
1583549LOC681142similar to 60S ribosomal protein L32112251755022517937Rat
1584080Trub2-ps2TruB pseudouridine (psi) synthase homolog 2 (E. coli), pseudogene 2113385746833858582Rat
1583177Ifnar2interferon alpha and beta receptor subunit 2113152779031559834Rat
1592954LOC680375similar to Charged multivesicular body protein 6 (Chromatin-modifying protein 6)1182688088269540Rat
1589452LOC680624similar to CG30497-PA, isoform A111227510312277820Rat
1591546LOC683062similar to voltage-dependent anion channel 11129687892980203Rat
1589096Krtap26-1keratin associated protein 26-1112861330428614260Rat
1586206LOC288331similar to KDEL (Lys-Asp-Glu-Leu) containing 11170321127034106Rat
1586207LOC288330similar to SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A) (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002)1170607947061707Rat
1586208LOC288312similar to phosphoribosylaminoimidazole carboxylase112610308926104397Rat
1586209LOC288311similar to Tricarboxylate transport protein, mitochondrial precursor (Citrate transport protein) (CTP) (Tricarboxylate carrier protein) (Solute carrier family 25 member 1)112666256326665205Rat
1584835LOC679706similar to DNA-directed RNA polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1)1119166141917727Rat
1583715Trub2-ps1TruB pseudouridine (psi) synthase homolog 2 (E. coli), pseudogene 1113382987633831130Rat
1583716LOC501769similar to 40S ribosomal protein S20112881050228810886Rat
1583717LOC501753similar to ADP-ribosylation factor-like 2 binding protein isoform 11168527556853293Rat
1586133LOC363746similar to 40S ribosomal protein S7 (S8)113167294431674967Rat
1562683RGD1562683RGD1562683113374746233760100Rat
1587389LOC288294similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)112281721922818558Rat
1588263Krtap16-5keratin associated protein 16-5112889979228900376Rat
1588200LOC680766similar to 60S ribosomal protein L7111517785215178875Rat
1596982LOC678702hypothetical protein LOC6787021160993706099937Rat
1598077LOC679993similar to U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C protein) (U1-C)1141596154160153Rat
1591507Mrpl39mitochondrial ribosomal protein L39112418160524200022Rat
1592576LOC685572similar to mortality factor 4 like 1112980246429803745Rat
1594166LOC680265similar to eukaryotic translation elongation factor 1 epsilon 1112061182520612894Rat
1595502LOC680121similar to heat shock protein 8111349916813501271Rat
1595144Krtap19-5keratin associated protein 19-5112884208728842287Rat
1597041LOC498051hypothetical LOC498051112659053926591519Rat
1597043LOC498045similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)111733823017340289Rat
1597045LOC498037similar to cell division cycle 10 homolog1127848902786402Rat
1598007LOC681265hypothetical protein LOC681265112513226225132880Rat
1597984LOC681289similar to poly(rC) binding protein 2111972685719817316Rat
2299853Smim11asmall integral membrane protein 11A113245050832460244Rat
2319758LOC100361614hypothetical LOC1003616141149772574977583Rat
2319158LOC100361922eukaryotic translation initiation factor 4E-like1171799707180685Rat
2319897LOC100361572hypothetical LOC100361572111353073413531548Rat
2319543LOC100361731hypothetical LOC1003617311163114696312327Rat
2319676LOC100361697small nuclear ribonucleoprotein polypeptide E-like111413413914134417Rat
2323404LOC100363236keratin associated protein 13-like112871768128718300Rat
2320648Krtap27-1keratin associated protein 27-1112862945228630115Rat
2320754LOC100361106geminin-like1122645362265197Rat
2322928Mrps6mitochondrial ribosomal protein S6113220824632263999Rat
2320810Krtap24-1keratin associated protein 24-1112858218928584930Rat
2323257Krtap11-1keratin associated protein 11-1112970980929711328Rat
2323315Krtap8-1keratin associated protein 8-1112961865029618941Rat
2321950LOC100360507inducible carbonyl reductase-like113381293133815418Rat
2323353LOC100363287RIKEN cDNA 2310034C09-like112872431628724865Rat
2323555Krtap13-1keratin associated protein 13-1112869258228693409Rat
2323841LOC100359452hypothetical LOC100359452112907457229080305Rat
4888572Mir3588microRNA 3588111609733716097442Rat
2324553LOC100362501transmembrane protein 126A112407431224077377Rat
2325435Mirlet7c1microRNA let-7c-1111605287316052966Rat
2325478Mir802microRNA 802113357025633570351Rat
2325575Mir125b2microRNA 125b-2111609734616097433Rat
2324078LOC100362780sodium/potassium-transporting ATPase subunit beta-3-like112691379526915004Rat
2325580Mir99amicroRNA 99a111605215316052233Rat
2324754LOC100363136hypothetical protein LOC100363136112867218328673013Rat
2324810LOC100363079protein tyrosine phosphatase 4a1-like112866939928669998Rat
2325059LOC100359671ribosomal protein L29-like112962901829640182Rat
6489189LOC100911990uncharacterized LOC100911990113089342930895694Rat
6488151LOC100912272keratin-associated protein 26-1-like112859762228598220Rat
6493479LOC100911342chromobox protein homolog 2-like1130394413040963Rat
6490462LOC100911810UPF0368 protein Cxorf26 homolog112743194027449070Rat
6494940LOC100911078nucleophosmin-like11359453360067Rat
6502010LOC100909746histone deacetylase 1-like111677585216777119Rat
6502137LOC100909756probable tRNA pseudouridine synthase 2-like113385864133859891Rat
6502456LOC100909699probable tRNA pseudouridine synthase 2-like113384049933841753Rat
6499722LOC100910158UPF0197 transmembrane protein C11orf10 homolog112071948120719858Rat
6503278LOC100909495pre-mRNA-splicing factor CWC22 homolog112954014329540957Rat
6503646LOC100909452pre-mRNA-splicing factor CWC22 homolog112953132329533462Rat
7489038Mir155microRNA 155112417660324176667Rat
7527339LOC102550021uncharacterized LOC1025500211176966487711333Rat
7505083LOC102551105keratin-associated protein 20-2-like112903282629032990Rat
7499203LOC102551587uncharacterized LOC102551587112230754022351900Rat
7532083LOC102554018uncharacterized LOC102554018113126371231268664Rat
7539659LOC10254882860S ribosomal protein L21-like112039311320394982Rat
7521170LOC102546782uncharacterized LOC102546782111666935016673642Rat
7613053LOC102552137keratin-associated protein 20-2-like112912311829123911Rat
7631561LOC102556347carbonyl reductase [NADPH] 1-like113386342733865930Rat
7631868LOC102549130uncharacterized LOC102549130112191463321929411Rat
7613925LOC102556241uncharacterized LOC102556241111519646115205411Rat
7665279LOC102551679keratin-associated protein 20-2-like112908767829087975Rat
7557830LOC102551883uncharacterized LOC102551883112399322724003622Rat
7558711LOC102551168keratin-associated protein 20-2-like112904161929041960Rat
7622427LOC102549020uncharacterized LOC102549020113339350133423139Rat
7637203LOC102551003keratin-associated protein 20-2-like112902645929026891Rat
7637527Krtap22-2keratin associated protein 22-2112894034828940678Rat
7624393LOC102549158sorting nexin-1-like112805615128057886Rat
7586995LOC102548793uncharacterized LOC102548793113308892133091253Rat
7595009Krtap20l3keratin associated protein 20-like 3112901355629013863Rat
7630190LOC102552813uncharacterized LOC102552813112603068626051035Rat
7555231LOC102548387uncharacterized LOC102548387113241698632431013Rat
7555402LOC102548079uncharacterized LOC102548079113237368732379615Rat
7569665LOC102555371NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-like112751637127521025Rat
7588271LOC102551201keratin-associated protein 20-2-like112904939029049811Rat
7616512LOC102550708keratin-associated protein 19-3-like112891340128913674Rat
7616896LOC102554017uncharacterized LOC102554017111434508714432603Rat
7590870LOC102550973keratin-associated protein 19-4-like112883339728833654Rat
7618934LOC102550610uncharacterized LOC1025506101183885448399042Rat
7591890LOC102552243high mobility group protein B1-like111235102512351846Rat
7544685LOC102549895uncharacterized LOC1025498951175747867582514Rat
7547632LOC102551947keratin-associated protein 20-2-like112910835429108883Rat
7601414LOC102549086uncharacterized LOC102549086113355732633567106Rat
7601798LOC10254720460S ribosomal protein L9-like111703911917041032Rat
7580633LOC10255494060S ribosomal protein L32-like112718121627183604Rat
7604224LOC102549327transformer-2 protein homolog alpha-like1165467696585688Rat
7605601LOC102548550uncharacterized LOC102548550113311521433119583Rat
7606950LOC102549637filaggrin-2-like1173015917306701Rat
7607006LOC102551304keratin-associated protein 20-2-like112905614329056504Rat
7587881LOC102548866uncharacterized LOC102548866113307577433086400Rat
7735531LOC102552046keratin-associated protein 20-2-like112911299129113505Rat
7735540LOC102552891nuclease-sensitive element-binding protein 1-like111266885712727762Rat
7694615LOC102552104MLV-related proviral Env polyprotein-like112291168922913561Rat
7708718LOC102549956uncharacterized LOC1025499561176023487606977Rat
7687075LOC102552925uncharacterized LOC102552925113024776130255217Rat
7688666LOC102552244keratin-associated protein 20-2-like112913157629132030Rat
7727214LOC102551852keratin-associated protein 20-2-like112909771429098089Rat
7690081LOC102548078uncharacterized LOC102548078111537645715395317Rat
7690270LOC102548279uncharacterized LOC102548279113238778332416534Rat
7712322LOC102552725uncharacterized LOC102552725112545853525465931Rat
7740488LOC102546364uncharacterized LOC102546364111573073516004184Rat
7667694LOC102553096uncharacterized LOC102553096112655166926594378Rat
7696444LOC102551469uncharacterized LOC1025514691196099889641177Rat
7696941LOC102554400NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-like112736854927373203Rat
7669742LOC102549549uncharacterized LOC1025495491173725557390678Rat
7742893LOC102551406keratin-associated protein 20-2-like112906240429062650Rat
7698912LOC102555219uncharacterized LOC102555219112745643627462396Rat
7700217LOC102551771keratin-associated protein 20-2-like112909217229092348Rat
7746018LOC102552991eukaryotic translation initiation factor 4E-like111333875813340063Rat
7675061LOC102554317uncharacterized LOC102554317113159824631609573Rat
7748348LOC102551497keratin-associated protein 20-2-like112906926429069420Rat
7749511LOC102554346uncharacterized LOC102554346112736171727364825Rat
7729737Krtap20-1keratin associated protein 20-1112900824029008678Rat
9135017LOC10369351040S ribosomal protein S6 pseudogene111879085418791649Rat
9102091LOC103693538keratin-associated protein 21-1112924884029284384Rat
9143376LOC103690397uncharacterized LOC103690397111454331714574664Rat
9180291LOC103693536developmental pluripotency-associated protein 5A pseudogene112720192027202278Rat
9148102LOC103693505uncharacterized LOC103693505111416088814166036Rat
9153548LOC103693503ubiquitin-conjugating enzyme E2 variant 1 pseudogene1118261871828050Rat
9188311LOC103693511uncharacterized LOC103693511112106017921066110Rat
9117411LOC103693539uncharacterized protein-like113189319731893850Rat
9119122LOC103693508uncharacterized LOC103693508111612668416146423Rat
9165709LOC103693506uncharacterized LOC103693506111521999615258615Rat
9167873LOC103693514uncharacterized LOC103693514113034408230349934Rat
9209519LOC103693509uncharacterized LOC103693509111628650816288102Rat
9209526LOC103693513uncharacterized LOC103693513112961835529624921Rat
9084601LOC103693534olfactory receptor 6C74-like112309409023095514Rat
9276626LOC103693504cell wall protein DAN4-like1198525839858298Rat
9322773LOC103693519uncharacterized LOC103693519113308469133100144Rat
9247041LOC103693535uncharacterized LOC103693535112714175327154750Rat
9288948LOC103693512keratin-associated protein 16-3-like112882179628822248Rat
9369338LOC103693518uncharacterized LOC103693518113272255232726438Rat
9256175LOC103693515uncharacterized LOC103693515113049196630526189Rat
9425151LOC103693537keratin-associated protein 13-1-like112876187028762469Rat
9389452LOC103693516uncharacterized LOC103693516113081685630824408Rat
9394128LOC103693540uncharacterized LOC103693540113229867832324760Rat
9432534LOC103693507uncharacterized LOC103693507111613764116143533Rat
9413941LOC103693517uncharacterized LOC103693517113148786831497463Rat
10045371Mir155hgMir155 host gene112417541724177646Rat
11369037LOC108352294uncharacterized LOC108352294111626254016275484Rat
11446139LOC108352370uncharacterized LOC1083523701183975548398229Rat
11454106LOC108352388keratin-associated protein 19-2-like112882571628826305Rat
11435438LOC108352302uncharacterized LOC108352302112781532327816189Rat
11445134Smim34asmall integral membrane protein 34A113247388032478501Rat
11363569LOC108352305uncharacterized LOC108352305113128434331291682Rat
11450786LOC108352301uncharacterized LOC108352301112809156028162113Rat
11452100LOC108352299uncharacterized LOC108352299112716659227182329Rat
11431327LOC108352378uncharacterized LOC1083523781198525809862070Rat
11442152LOC108348130carbonyl reductase [NADPH] 1-like113384529233847793Rat
11442325LOC108352307uncharacterized LOC108352307113249992532507751Rat
11406618LOC108352379uncharacterized LOC1083523791195844399592717Rat
11414184Cebpzos-ps1CEBPZ opposite strand, pseudogene 1113043723030437458Rat
11415403LOC108352293uncharacterized LOC108352293111519148115197629Rat
11356529LOC108352380uncharacterized LOC108352380111203955912045002Rat
11409068LOC108352303uncharacterized LOC108352303112862574628660810Rat
11398645LOC108352295uncharacterized LOC108352295112259434322640390Rat
11400799LOC108352387H/ACA ribonucleoprotein complex subunit 3 pseudogene112285224022852528Rat
11380441LOC108352386uncharacterized LOC108352386111625542316258094Rat
11381215LOC108352304uncharacterized LOC108352304112981726929892185Rat
11381419LOC108352292uncharacterized LOC108352292111457461314592635Rat
11383083LOC108348040voltage-dependent anion-selective channel protein 1 pseudogene1134929523512283Rat
11502316LOC108352298serine/arginine-rich splicing factor 3 pseudogene112697577126977958Rat
11495806LOC108352297uncharacterized LOC108352297112680292326813771Rat
11512506LOC108352296uncharacterized LOC108352296112366670123817103Rat
11517023LOC108352291uncharacterized LOC1083522911172792507292240Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33792D11Mit2256113107218431072445Ratregion
33899D11Mit4102112204305622043149Ratregion
34003D11Mit3138112670603726706170Ratregion
34130D11Mgh6100111901627219016371Ratregion
35989D11Rat29145111197392211974347Ratregion
35989D11Rat29145111197392211974066Ratregion
36346D11Mit10229113377890633779134Ratregion
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5501752MARC_11511-11512:1001088403:1461113181530631815766Ratregion
5501702APP709112442526224425970Ratregion
5506781G45351289113267537932675667Ratregion
5502815TIAM1188112993343529933622Ratregion
5502431RH12481496113183754231837637Ratregion
5502479RH125003330112869279928693128Ratregion
5502583RH125452811119091691909249Ratregion
5502583RH125452811119056621905741Ratregion
10755482rs107338789111947517919475179Ratregion
Position Markers

Peak: (D11Rat101)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01111,367,306 - 11,367,552NCBI
Rnor_5.01115,035,502 - 15,035,748UniSTS
RGSC_v3.41112,965,570 - 12,965,817RGD
RGSC_v3.41112,965,571 - 12,965,817UniSTS
RGSC_v3.11112,965,570 - 12,965,817RGD
Celera1112,855,183 - 12,855,429UniSTS
RH 2.0 Map11663.6RGD
SHRSP x BN Map112.5899RGD
Cytogenetic Map11p11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11133867429Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11172720192Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)1132503169342559Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11935127454351274Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111136730644444347Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111632197346583360Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111901627225069932Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111901627290463843Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111947517979734728Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)112194422966944229Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)112194422966944229Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)112204314944444112Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112540112970401129Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112572003870720038Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112572003870720038Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112831466586994795Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113043533963186373Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)113043533986714631Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113215552082443118Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general parental S allele was responsible for increased trait 1581737
qtl_general 8% NaCl diet was started at 12 weeks of age and given for 8 weeks 1581737