D5Rat109 Marker Search Result - Rat Genome Database

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Marker: D5Rat109

Symbol: D5Rat109
Previously known as: oxsts11023; R0066-A12; 
RGD ID: 38026
Expected Size: 249 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25163,581,702 - 163,581,951 (+)MAPPERmRatBN7.2
Rnor_6.05170,273,699 - 170,273,947NCBIRnor6.0
Rnor_5.05173,809,554 - 173,809,802UniSTSRnor5.0
Celera5161,802,374 - 161,802,622UniSTS
RH 3.4 Map51140.9UniSTS
RH 3.4 Map51140.9RGD
RH 2.0 Map51128.5RGD
FHH x ACI Map596.3999RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GGTGTGGTATGGTGCCTGTA
Reverse Primer CCACACATATGTGCACATAAACT
 
Template 
CATGCTGCAGGTCGACTCTAGAGGATCCCCCCTCTGGCACCTACACCCAGGAGTCCACACATAT
GTGCACATAAACTAAAAATAAATATATTGAGATGGAGAATGATTGATAAAAGACACCCAGGGTT
GACCTCAGGCTTCCACAGGCATGCACACCTACACACATACATGCACCCAGCATACTAACAAAGA
GGGAGAGAGACAGACAGACAGACACACACACACACACACACACACATAGAGATAAACAGACAGA
CAGACAAAGAAGGAGTATGTAGGTAAGTACAGGCACCATACCACACCAGAGCTCTTTTGTCGGA
CCACACTAATACGGGGTAACGNGNTTNNATTTCGTANCCATGGTCATAGCGGTTTCGTGTGTGA
AATTGTTATCCGCTCACAATTCCACACAANATACGAGCCGGAAGCATANAGTGTACAGCCTGGG
GTGCTAATGAGTGAGCTAACTCACATTATTGCGTTGNCTCACTGCCGCTTTCCAGTCGGGAAAC
TGTCGTGCCACTGCATTAATGAATCGGCACGCCGGGGAGAGGGGTTGGTATGGGCGCAGGTGGT
TTCTNCACAGTGAGAGGGACACTGATTGCTTCACGCTGNCTGAGAANTCNCAACGTCANTGTTC
CACAGNAACTGTTATGTGTCC
Strain, Expected Size(s)

ACI/N 252 AVN/Orl 243 BBDP/Rhw 252
BBDR/Rhw 252 BC/CpbU 243 BDVII/Cub 248
BN-Lx/Cub 252 BN/SsNHsd 252 BP/Cub 252
BUF/Pit 252 COP/OlaHsd 252 DA/PitN 252
DON/Melb 252 F344/Pit 252 FHH/Eur 243
GH/Omr 252 GK/KyoSwe 252 IS/Kyo 243
LEW/Pit 252 LH/Mav 252 LN/Mav 252
LOU/CHan 252 M520/N 252 MHS/Gib 252
MNR/N 252 MNRA/N 252 MNS/Gib 252
MR/Pit 252 NEDH/K 243 NP9 252
ODU/N 252 OKA/Wsl 252 OM/Ztm 243
P5C 252 PVG/Pit 252 SD/Rij 248
SHR/OlaHsd 252 SHRSP/Riv 252 SR/Jr 252
SS/Jr 252 WAG/RijKyo 252 WF/Pit 248
WIST/Nhg 252 WKY/OlaHsd 252 WN/N 252
WTC/Kyo 252


GenBank Nucleotide JH615323.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat

1 to 10 of 19 rows