Marker: DXRat8 |
| Symbol: |
DXRat8 |
| Previously known as: |
oxsts7622; R030-D07; R0030-D07;
|
| RGD ID: |
36111 |
| Expected Size: |
161 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
GRCr8 | X | 24,470,360 - 24,470,521 (+) | Marker Load Pipeline | | mRatBN7.2 | X | 20,990,947 - 20,991,088 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | X | 21,592,623 - 21,592,783 | NCBI | Rnor6.0 | Rnor_5.0 | X | 21,859,080 - 21,859,240 | UniSTS | Rnor5.0 | RGSC_v3.4 | X | 41,386,788 - 41,387,080 | RGD | RGSC3.4 | RGSC_v3.4 | X | 41,386,879 - 41,387,039 | UniSTS | RGSC3.4 | RGSC_v3.1 | X | 41,440,348 - 41,440,508 | RGD | | Celera | X | 21,272,130 - 21,272,290 | UniSTS | | RH 3.4 Map | X | 186.31 | UniSTS | | RH 3.4 Map | X | 186.31 | RGD | | RH 2.0 Map | 21 | 223.4 | RGD | | SHRSP x BN Map | X | 6.8999 | RGD | | FHH x ACI Map | X | 7.93 | RGD | | Cytogenetic Map | X | q21 | UniSTS | |
|
| Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
COP/OlaHsd
QTLs:
Bp64
Uae27
Bw13
Gluco34
Memor2
Genes:
Huwe1
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 5. |
UniSTS Pipeline |
RGD automated pipelines
|
| 6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
TCTTTTTGTGGAAGCAGCG |
| Reverse Primer |
TCTAATTGAGGATGGTGGGG |
| |
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 1561763 | Huwe1 | HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 | X | 20873795 | 21001378 | Rat | |
QTLs in Region (GRCr8)
| 1598873 | Memor2 | Memory QTL 2 | 2.5 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | X | 20990947 | 41052531 | Rat | | 70165 | Bp64 | Blood pressure QTL 64 | 5.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | X | 1448129 | 31706553 | Rat | | 1298071 | Edpm12 | Estrogen-dependent pituitary mass QTL 12 | 3.2 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | X | 2927898 | 47927898 | Rat | | 2290375 | Gluco34 | Glucose level QTL 34 | 2.75 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | X | 20990947 | 41203591 | Rat | | 731181 | Uae27 | Urinary albumin excretion QTL 27 | 2.7 | 0.0059 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | X | 1 | 43491017 | Rat | | 61430 | Cia18 | Collagen induced arthritis QTL 18 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | X | 14843113 | 120568734 | Rat | | 10755455 | Coatc13 | Coat color QTL 13 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 4406000 | 49406000 | Rat | | 631666 | Iddm5 | Insulin dependent diabetes mellitus QTL 5 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | X | 4494549 | 49494549 | Rat | | 634325 | Bw13 | Body weight QTL 13 | 0 | | body mass (VT:0001259) | body weight (CMO:0000012) | X | 1447972 | 20991088 | Rat | | 631204 | Gluco15 | Glucose level QTL 15 | | 0.001 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | X | 1623715 | 22646544 | Rat | | 71116 | Niddm16 | Non-insulin dependent diabetes mellitus QTL 16 | 7.81 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | X | 15297802 | 60297802 | Rat | |
