D6Rat22 Marker Search Result - Rat Genome Database

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Marker: D6Rat22

Symbol: D6Rat22
Previously known as: oxsts7267; R014-B05; R0014-B05; 
RGD ID: 35140
Expected Size: 89 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8678,328,752 - 78,328,841 (+)Marker Load Pipeline
mRatBN7.2672,593,596 - 72,593,685 (+)MAPPERmRatBN7.2
Rnor_6.0676,002,643 - 76,002,731NCBIRnor6.0
Rnor_5.0685,538,356 - 85,538,444UniSTSRnor5.0
RGSC_v3.4675,462,022 - 75,462,111RGDRGSC3.4
RGSC_v3.4675,462,023 - 75,462,111UniSTSRGSC3.4
RGSC_v3.1675,465,149 - 75,465,237RGD
Celera671,434,873 - 71,434,961UniSTS
RH 2.0 Map6698.7RGD
SHRSP x BN Map647.8099RGD
FHH x ACI Map656.9999RGD
Cytogenetic Map6q23UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Emca7   Bss16   Bmd14  
Genes:   Srp54a  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer TTGTAAGTATGCACTCAATACGTG
Reverse Primer AAGATGAATGTTAGAGGGCTGG
 
Template 
GCAAGTTGCATGCTGCAGGTCGATCTAGAGGATCCCCACTGCATGTTTTTAGTTCCAGTTATTG
GGAGGCAGAGGNAGGCGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTATAGAGTGAGCTCTAG
TATAGTCAGGGCTACACAGTGAAACCCTGTCTTGAAAAACAAAAAGCAAAACAAAACTTGTAAG
TATGCACTCAATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGTGTGTGTGTGTGTGTGT
GTGTCCAGCCCTCTAACATTCATCTTTAAGAATTAACTGGTGGTACCGAGCTCGAATTCGTAAT
CATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC
CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGNGCTAACTCACATTAATTGCGTTG
CGCTCACTGCCCGCTTTCCAGTCGTGAAANTGTCGTGCCAGCTGCATTAATGA
Strain, Expected Size(s)

ACI/N 98 AVN/Orl 94 BBDP/Rhw 98
BBDR/Rhw 98 BC/CpbU 94 BDIX/Han 94
BDVII/Cub 94 BN-Lx/Cub 90 BN/SsNHsd 90
BP/Cub 94 BUF/Pit 94 COP/OlaHsd 98
DA/PitN 98 DON/Melb 103 F344/Pit 103
GH/Omr 94 GK/KyoSwe 90 IS/Kyo 98
LE/Mol 94 LEW/Pit 98 LH/Mav 94
LN/Mav 94 LOU/CHan 98 M520/N 94
MHS/Gib 98 MNR/N 94 MNRA/N 94
MR/Pit 94 NEDH/K 94 NP9 98
ODU/N 94 OKA/Wsl 96 OM/Ztm 94
P5C 98 PVG/Pit 94 SD/Rij 94
SHR/OlaHsd 96 SHRSP/Riv 96 SR/Jr 94
SS/Jr 94 WAG/RijKyo 98 WF/Pit 94
WIST/Nhg 94 WKY/OlaHsd 98 WN/N 94
WTC/Kyo 98


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
621390Srp54asignal recognition particle 54A67258758472626878Rat
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat

1 to 10 of 29 rows


Database
Acc Id
Source(s)
NCBI Gene 100302808 UniSTS
  100303032 UniSTS
  100303191 UniSTS
  116650 UniSTS