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Gene: Ncoa1 (nuclear receptor coactivator 1) Ictidomys tridecemlineatus

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Symbol:

Ncoa1

Name:

nuclear receptor coactivator 1

RGD ID:

12496795

Description:

ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); nuclear receptor binding (ortholog); nuclear retinoic acid receptor binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH breast carcinoma (ortholog); Breast Neoplasms (ortholog); endometrial carcinoma (ortholog); FOUND IN chromatin (inferred); cytosol (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear receptor coactivator 1, transcript variant X1; nuclear receptor coactivator 1, transcript variant X2; nuclear receptor coactivator 1, transcript variant X3; nuclear receptor coactivator 1, transcript variant X4; nuclear receptor coactivator 1, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	63,234,427 - 63,471,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	7,368,462 - 7,465,615 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	7,368,393 - 7,605,754 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast carcinoma (ISO)

Breast Neoplasms (ISO)

endometrial carcinoma (ISO)

endometriosis (ISO)

Experimental Mammary Neoplasms (ISO)

hypothyroidism (ISO)

Neoplasm Metastasis (ISO)

obesity (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

Tatton-Brown-Rahman syndrome (ISO)

thyroid hormone resistance syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to hormone stimulus (IEA,ISO)

cellular response to Thyroglobulin triiodothyronine (IEA,ISO)

cerebellum development (ISO)

cerebral cortex development (ISO)

estrogen receptor signaling pathway (IEA)

estrous cycle (ISO)

hippocampus development (ISO)

hypothalamus development (ISO)

labyrinthine layer morphogenesis (IEA,ISO)

lactation (ISO)

male gonad development (ISO)

male mating behavior (ISO)

mRNA transcription by RNA polymerase II (IEA)

positive regulation of apoptotic process (IEA)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of female receptivity (ISO)

positive regulation of neuron differentiation (IEA)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription from RNA polymerase II promoter by galactose (IEA)

progesterone receptor signaling pathway (IEA)

regulation of DNA-templated transcription (IEA)

regulation of thyroid hormone receptor signaling pathway (IEA,ISO)

response to estradiol (ISO)

response to hormone (ISO)

response to progesterone (ISO)

response to retinoic acid (ISO)

Cellular Component

chromatin (IEA)

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

plasma membrane (IEA)

protein-containing complex (IEA)

RNA polymerase II transcription regulator complex (IEA)

transcription regulator complex (IEA)

Molecular Function

chromatin binding (IEA)

DNA binding (IEA)

nuclear estrogen receptor binding (IEA,ISO)

nuclear receptor binding (IEA,ISO)

nuclear retinoic acid receptor binding (ISO)

nuclear retinoid X receptor binding (ISO)

protein binding (ISO)

protein dimerization activity (IEA)

protein-containing complex binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

transcription coactivator activity (IEA)

transcription factor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

aldosterone signaling pathway (ISO)

androgen signaling pathway (ISO)

cortisol signaling pathway (ISO)

estrogen signaling pathway (ISO)

hypoxia inducible factor pathway (ISO)

retinoic acid signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ncoa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	63,234,427 - 63,471,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	7,368,462 - 7,465,615 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	7,368,393 - 7,605,754 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCOA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	24,491,254 - 24,770,702 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	24,491,254 - 24,770,702 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	24,714,123 - 24,993,571 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	24,660,850 - 24,847,075 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	24,718,996 - 24,905,219	NCBI
Celera	2	24,648,250 - 24,833,882 (+)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	24,545,896 - 24,731,418 (+)	NCBI		HuRef
CHM1_1	2	24,736,919 - 24,923,129 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	24,525,913 - 24,805,480 (+)	NCBI		T2T-CHM13v2.0

Ncoa1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	4,297,362 - 4,569,452 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	4,297,362 - 4,527,182 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	4,247,362 - 4,477,206 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	4,247,362 - 4,477,182 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	4,247,362 - 4,484,060 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	4,257,424 - 4,491,127 (-)	NCBI		MGSCv36	mm8
Celera	12	4,179,857 - 4,348,692 (-)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	2.05	NCBI

Ncoa1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	32,952,090 - 33,229,829 (-)	NCBI		GRCr8
mRatBN7.2	6	27,232,609 - 27,507,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	27,232,611 - 27,475,664 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	27,524,867 - 27,768,734 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	27,840,748 - 28,084,625 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	27,318,440 - 27,562,032 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	28,677,563 - 28,931,844 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	28,677,540 - 28,931,843 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	38,483,476 - 38,734,322 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	27,224,396 - 27,473,926 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	27,229,075 - 27,336,790 (-)	NCBI
Celera	6	26,704,021 - 26,946,167 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Ncoa1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	6,794,821 - 6,892,566 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	6,676,780 - 6,892,587 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCOA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	101,755,028 - 102,031,268 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	101,759,056 - 102,035,245 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	24,485,068 - 24,764,135 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	24,581,645 - 24,859,488 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	24,733,117 - 24,859,488 (+)	Ensembl	panpan1.1		panPan2

NCOA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	18,880,676 - 19,124,300 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	18,880,383 - 19,122,258 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	18,777,980 - 19,021,230 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	19,302,445 - 19,397,682 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	19,153,592 - 19,396,341 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	18,890,805 - 19,134,195 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	18,899,937 - 19,143,634 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	18,940,197 - 19,183,703 (+)	NCBI		UU_Cfam_GSD_1.0

NCOA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	113,999,253 - 114,250,298 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	113,997,214 - 114,251,080 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	121,230,135 - 121,286,004 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	3	121,349,942 - 121,379,022 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCOA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	82,898,368 - 83,028,137 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	82,897,348 - 83,013,589 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	28,994,261 - 29,270,072 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncoa1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	6,943,726 - 7,054,454 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	6,770,745 - 7,054,616 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021724639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000006014 ⟹ ENSSTOP00000005382

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	7,368,462 - 7,465,615 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000031257 ⟹ ENSSTOP00000031631

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936493	7,368,462 - 7,465,615 (-)	Ensembl

RefSeq Acc Id:

XM_021724640 ⟹ XP_021580315

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,234,427 - 63,471,108 (+)	NCBI
SpeTri2.0	NW_004936493	7,368,393 - 7,605,754 (-)	NCBI

Sequence:

show sequence

GAGGGGGAGCCGGAAGTCAGCGCGGGCGCCCCTCGGCCCCGAGGAGCGCCGTGACCTTGGCCAG
CCCGCCAACCTCTGCGAGTCTCGTCTCCTGCACCGCGAAATGGGGGCGACCCCGGCGTACCTCT
CCGTAGGCGCAGCCTTCGACGGCACTTGTGCTTAGCCCCGCGCTCTTGCCCTCTCTGCCCGGGA
CCGGGGACTTGGGAGGTAGAAATGGGTGGATAAAGCCGATTTTCCTGTTACGACTGGGGTTTGG
TCCCTTTCCTGGGATTCTGCCCGAAAGGACCTAGGAAGGGAAGCAAACGTGTTGACTAGCCGAT
TGGGAGGTGGGGTTGGTTAGTGGTCAGTGACAGAACTCTCCTGGTCCCTTGGAAGAGACATAGA
GAAATCGGACACCAGGGTCCCTCGTCCTTAACCACCCGGCTGTGGTGTTTTTCTTTCTTTTTTC
CTTTTCTTTTTTCCCCATTTTCTTTTAATAAAAGCAGTCACTCCCATGGGTCAGACACTGACTA
GTCTAAGGATGTTGGAGGGAGGACGGAGGGGTTGACAAGGCAGAGGACAGGCCGCCGTGCTGGG
GCCGCAGAGTTTGGTGGGGAGGAAAACTTTAAACTGGAGAGTCTGTGATCCTTTCTTGCCCGCC
TCTCCTCCTTTATTGTGGAGGCGTTGAAGAGGCAGGTGCCCTTGTGGAGAAGGTGACACTTTTT
CTTTTGAGATAGTGAATTTTTAATGTCGAGTATTTGGTTGGTGAATGAATTGCGGCCCCAGCAC
CTCAGTGGATGGCAAGAGGAACTCTTTGGCCATGATTTGTGAGGCCTGATGCTTAGACTTAAGT
GATGAAGAAAATCAAGCGTCCGTGCAAGACATTACTACCTTGAAGTTCAGATCTATCCATGCTA
ATGGAAATGTAACTGGAACTGACTCTGATGATAAAATCAAGGACCATCAGACAAGATCATGCAC
TAGGAAACTTTGCTTCCAAATGAAGGCACCAACATTTAGAATTTCTGCTTATTCTAAGGTGTGA
AGTTTTTCAACATGAGTGGCCTTGGGGACAGTTCATCCGACCCTGCTAACCCAGACTCACATAA
GAGAAAAGGATCGCCATGTGACACACTGGCATCAAGCACTGAAAAGAGGCGCAGGGAGCAAGAA
AATAAATATTTAGAAGAACTAGCTGAGTTACTGTCTGCCAACATCAGTGACATTGACAGTTTGA
GTGTAAAACCAGACAAATGCAAGATTTTGAAGAAAACAGTCGATCAGATACAGCTAATGAAGAG
AATGGAACAAGAAAAATCAACAACTGATGATGATGTTCAGAAATCAGATATCTCATCGAGTAGT
CAAGGAGTAATAGAAAAGGAATCCTTGGGACCTCTTCTTTTGGAGGCTTTGGATGGATTTTTCT
TTGTTGTGAACTGTGAAGGGAGAATTGTATTTGTGTCAGAGAATGTGACCAGCTACTTGGGTTA
CAATCAGGAGGAATTAATGAATACCAGCGTCTACAGCATACTGCACGTGGGAGATCATGCAGAA
TTTGTCAAGAATCTGCTACCAAAATCCCTAGTAAATGGAGTTCCTTGGCCTCAAGAGGCAACAC
GCCGAAATAGCCATACTTTTAACTGCAGGATGCTAATTCACCCTCCAGATGAGCCAGGTACTGA
GAACCAAGAAGCCTGCCAACGGTATGAAGTAATGCAGTGTTTCACTGTGTCACAGCCAAAATCG
ATTCAAGAAGATGGAGAAGATTTCCAGTCATGTTTGATTTGTATTGCACGGAGATTACCTCGGC
CTCCAGCTATTACGGGTGTAGAATCGTTTATGACAAAGCAAGATACTACAGGTAAAATCATCTC
TATCGATACTAGTTCTCTGAGAGCTGCTGGCAGAACTGGCTGGGAAGATTTAGTGAGAAAATGC
ATTTATGCATTTTTCCAACCTCAGGGCAGAGAGCCATCTTATGCCAGACAACTGTTTCAAGAAG
TGATGACTCGTGGCACTGCCTCCAGCCCATCCTATAGATTCATATTGAATGATGGGACAATGCT
TAGCGCCCACACCAAGTGTAAACTTTGCTACCCTCAAAGTCCAGACATGCAGCCTTTCATCATG
GGAATTCATATCATCGACAGGGAACACAGTGGGCTTTCTCCTCAAGATGACACTAATTCTGGAA
TGTCAATTCCCCGAGTAAACCCCTCAGTCAATCCTAGTATCTCTCCAGCTCATGGTGTGGCCCG
TTCATCCACATTGCCACCATCCAACAGCAGCATGGTATCCACAAGAGTAAACCGCCATCAGAGC
TCAGACCTTCATAGCAGCAGTAGTCATAGTAATTCTAGCAACAACCAAGGGAGTTTTGGATGCT
CACCTGGAAATCAGATTGTAGCCAATGTTGCCTTAAACCAGGGACAGGCCAGTTCCCAGAGCAG
TAACCCCTCTTTAAACCTCAATAATTCTCCTATGGAAGGTACAGGAATTTCCCTAGCACAGTTC
ATGTCTCCAAGGAGACAGGTTACTTCTGGCTTGGCAACAAGGGCCAGGATGCCAAACAATTCAT
TTCCTCCAAATATTCCAACATTAAATTCCCCAGTTGGCATGACAAGTAGTGCCTGTAATAATAG
TAATCGATCTTATTCAAACATCCCTGTAACATCTTTACAGGGCATGAATGAAGGACCCAATAAC
TCTGTTGGCTTCTCTGCCAGTTCTCCAGTCCTCAGGCAGATGAGCTCACAGAATTCACCTAGTA
GATTAAATATACAACCAGCAAAAGCTGAGTCCAAAGATAACAAAGAGATTGCATCCATTTTAAA
TGAAATGATACAGTCTGACAACAGTGCTAGTGATAGCAAACCCCTGGATTCAGGGCTTCTGCAT
AACAATGACAGACTCTCAGATGGAGACAGTAAATACTCTCAAACCAGTCACAAACTAGTGCAGC
TTTTGACAACAACTGCAGAACAGCAGTTACGGCATGCTGATATAGACACAAGCTGCAAAGAAGT
ACTGTCTTGCACGGGCACTTCCAGCTCTGCCTCTGCTAACTCTTCAGGAGGTACTTGCCCCTCC
TCTCATAGCTCGCTGACAGAGCGGCACAAAATTCTGCACCGGCTCTTACAAGAGGGAAGTCCCT
CAGATATCACCACTTTGTCCGTGGAGCCCGATAAAAAGGACAGTGCATCTACTTCTGTGTCAGT
AACTGGACAGGCCCAAGGAAACTCCAATATAAAACTAGAACTGGATACTTCAAAGAAAAAAGAA
TCAAAAGACCATCAGCTCCTGCGCTACCTTTTAGACAAAGATGAGAAAGATTTAAGATCAACTC
CAAACCTTAGCCTGGATGATGTAAAGGTGAAAGTGGAAAAGAAAGATCAGATGGATCCTTGTAA
CACAAACCCAACCCCGATGACCAAACCCGCTCCTGAAGAGATTAAACTGGAGTCCCAGAGCCAG
TTTACAGCTGACCTTGAGCAGTTTGATCAGTTACTGCCCACTCTGGAGAAGGCAGCACAGCTGC
CAGGCCTGTGTGAGACAGACAGGATGGATGCTACAGTCACCAGTGTAACTGTCAAATCGGAGAT
CCTACCAGCTTCACTTCAGTCCACCACTGCCAGACCCACTTCCAGGCTGAATAGATTGCCTGAA
CTGGAATTGGAAGCAATTGATAACCAGTTTGGACAACCAGGAACAGGTGACCAGATTCCATGGG
CAAATAATGCTGTGACAGCTATTAATCAGAATAAAGCAGAAGACCAGTGTATCAGTTCACAATT
AGATGAGCTTCTCTGTCCACCAACAACAGTAGAAGGAAGAAATGATGAGAAGGCTCTTCTGGAA
CAACTGGTGTCCTTCCTCAGTGGCAAAGATGAAACTGAGCTTGCTGAACTAGACAGAGCACTGG
GAATTGACAAACTTGTTCAGGGCGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAGCA
AGCAACACCACCTCTAATGATGGAAGAAAGACCCAACCTCTATTCACAGCCTTACTCTTCTCCT
TCTCCTACTGCCAATCTCCCTAGCCCATTCCAAGGCATGGTCAGGCAGAAACCTTCACTGGGGA
CTATGCCTGTTCAAGTAACACCTCCCAGAGGTGCTTTTTCACCTGGCATGGGTATGCAGCCCAG
GCAAACTCTAAACAGACCTCCAGCTGCACCTAACCAACTTAGACTTCAACTACAACAGCGGTTA
CAGGGACAGCAGCAGTTGCTACACCAAAACCGACACGCTATCTTGAATCAGTTTGCAGCAACTG
CTCCTGTTGGCATCAACATGAGATCAGGCATGCAGCAACAAATTACACCTCAGCCACCTCTGAA
TGCGCAAATGTTGGCACAACGTCAGCGGGAGTTGTACAGTCAGCAGCACCGACAGAGGCAGCTT
ATACAGCAGCAGAGGGCCATGCTCATGAGGCAACAAAGCTTTGGGAACAACCTCCCTCCCTCAT
CTGGACTGCCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTA
CCCACCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCATTTTCTCAACTG
GCAGCAAATCCTGATGCAGCCTTGGCCACCCGCAACAGCATGGTGAACAGAGGCATGGCAGGAA
ACATGGGAGGACAGTTTGGCACTGGAATCAACCCTCAGATGCAGCAGAATGTCTTCCAGTATCC
AGGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGTCCTGGGAGCTCC
ATGGTGCCAATGCCAATCCCTCCCCCTCAGAGCTCTCTGCTCCAGCAAACTCCACCTGCTTCTG
GGTACCAGTCACCAGACATGAAGGCCTGGCAACAAGGAGCAATAGGAAACAACAATGTGTTCAA
TCAAGCTGTCCAGAACCAGCCTACACCTGCACAGCCAGGAGTGTACAACAATATGAGCATCACC
GTGTCCATGGCAGGTGGAAACACAAATGTTCAGAACATGAACCCAATGATGGGCCAGATGCAGA
TGAGCTCGTTGCAGATGCCAGGAATGAACGCTGTGTGCCCTGAGCAGATAAATGATCCAGCACT
GAGACACACAGGCCTCTACTGCAACCAGCTTTCATCCACTGACCTTCTCAAAACAGAAGCAGAT
GGAACCCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCG
GGGACCCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAACCCACGTCAGGACCACAGAC
CCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAAAGGAA
TGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTT
TGATATCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAA
AGAAAGAAAAAAAATGTTCACTTTTGTTGGGAGATTGAGAGATGCTTTTGTTTCTTTGTAAAGG
CCTTGGATATTAGAAACAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCAAATTTAATTAT
TCTTATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGAAGGAGAACCAAAA
CAGCAAGTTCCAAGGGGAAGACGAAGCTCCACCTCGCTGGCTCAGTCCTGACCCTGCCCAGGAA
GATAGGCCCATGGGGCTTTGCCTGTGTCCGTCCACCAAAGGCTGTCACGTTCCTCAAAACCAAC
AGCCCTCCCTACCCCAACCCCAGGCAGCTTGTATGTACAATCAGCTTCTTCAAGCAACTCTTTA
TCTGTTGGCTTCAAGATAATATTTTGCCTCCACATATGTACCCTTTCTCCTTTTTTTAAAGATG
GATTTAAACCAAGATGCCTCCAGGAAAGAGGATGATATTCACAGAGGAATCCAAAAAATACAGT
TTGGGAAAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGATGTGAGTTCTGTCAATT
ATTGTAGATACAGTTTCCTGATTAAATCCGGCGAAAAAGGCAGCCTGTTCTTTCTGCTTTTATT
GTATTAACAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATTCAAGTAGCTT
ATTTTTAATCTCACTGTAAATATATTTGATTTCTTGTAGAAATTGATTTCTTTCTGTTTAATTT
TATGCTTTTAATATCATATTCTTGATTTTTCTAAATTTGTGTGAAATATAACATTGATTGAATT
GCAGTTGAATTTGGCTAGTAATATTTCATTATTTTAGCAATTGTGATGCCATGTGTGGATTTAC
TTTGGGGCTCATATCGATGTGGCACTGCCAGAAAGAGCCATTCCAGCTGAGCTAGAGCAGACTA
CCCCAGAGTGTCCAGGATCACCCAGCCAGAAATGCACATGCCGCTTGTACAGAGGGAAATTAGT
GCTCAAAGAAAATCTGCTGTTTTTCTTAGGTTGACTTTGGGAATTTGAGTTTCCATCTGTGCAA
ATATAAATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATGTTTTCCCTTTGTGTCCTGTCA
TTCGGCCACGTCCCATCTCATCCTGGTCTCTGAGAAAGGAGCCAGTGAACTGACTTTCTAGTTC
TAGAAGTTCCACCACAGGCCAGGAAAGCTTGAGAAAGCATTGTGTGGAAGAAGCAAAGTAGACC
CCCATCACTCACCATTACCTGCATCCCTGGGCCTGTGAACGATGACAACACTGACCTTCTGCAC
CAGCTACCTCTGCTTGCGGCAGAGAAAAGGCCATAAGAACCAACATGGATGAGGAGCATGGACT
CAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTCCTTTCTGCATCTCACCTCCCCTAGTTTC
AGATAACTCCATTGAACAGCATCTATTCGGAAACTATACCGAATAAAAAAAAAATTGATGGAAG
GGCTCACATGGGTAGCAACTATGAAACAGAAATAGGACACTCAGTCAAAAACATTATCTCTTTT
AGTTTTTCAGAAAATGCATCCTTGATTTCATTAATTTCCAGCTTGAAAGCCCAGCCATATTACT
CTAGTCCCTACCAAACTGCTCTAGGAGGCCATTTCCATTGTTTGTGATTTTTAGATGTGCAGTC
ATCAGGAAGTTCACCCTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCAT
AAGGAACTAGAAAAGAAAAGCAGTAAGGAAAATTGGAGATGCTAGCATCCTTCCCCATCCCAAC
TGCACCTTAAAGTATGCATGTCACCTTCAAGGTTTTATAATTGCACTGTTTGTTTTATGTATGT
ACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTC
ATTCCATAGGAAATTCACTTTTCCAGCTACTGAATAGAATCTGTTTAACAACCTCA

hide sequence

RefSeq Acc Id:

XM_021724641 ⟹ XP_021580316

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,234,431 - 63,471,108 (+)	NCBI
SpeTri2.0	NW_004936493	7,368,393 - 7,605,753 (-)	NCBI

Sequence:

show sequence

AGGGGGAGCCGGAAGTCAGCGCGGGCGCCCCTCGGCCCCGAGGAGCGCCGTGACCTTGGCCAGC
CCGCCAACCTCTGCGAGTCTCGTCTCCTGCACCGCGAAATGGGGGCGACCCCGGCGTACCTCTC
CGTAGGCGCAGCCTTCGACGGCACTTGTGCTTAGCCCCGCGCTCTTGCCCTCTCTGCCCGGGAC
CGGGGACTTGGGAGGTAGAAATGGGTGGATAAAGCCGATTTTCCTGTTACGACTGGGGTTTGGT
CCCTTTCCTGGGATTCTGCCCGAAAGGACCTAGGAAGGGAAGCAAACGTGTTGACTAGCCGATT
GGGAGGTGGGGTTGGTTAGTGGTCAGTGACAGAACTCTCCTGGTCCCTTGGAAGAGACATAGAG
AAATCGGACACCAGGGTCCCTCGTCCTTAACCACCCGGCTGTGGTGTTTTTCTTTCTTTTTTCC
TTTTCTTTTTTCCCCATTTTCTTTTAATAAAAGCAGTCACTCCCATGGGTCAGACACTGACTAG
TCTAAGGATGTTGGAGGGAGGACGGAGGGGTTGACAAGGCAGAGGACAGGCCGCCGTGCTGGGG
CCGCAGAGTTTGGTGGGGAGGAAAACTTTAAACTGGAGAGTCTGTGATCCTTTCTTGCCCGCCT
CTCCTCCTTTATTGTGGAGGCGTTGAAGAGGCAGGTGCCCTTGTGGAGAAGGTGACACTTTTTC
TTTTGAGATAGTGAATTTTTAATGTCGAGTATTTGGTTGGTGAATGAATTGCGGCCCCAGCACC
TCAGTGGATGGCAAGAGGAACTCTTTGGCCATGATTTGTGAGGCCTGATGCTTAGACTTAAGTG
ATGAAGAAAATCAAGCGTCCGTGCAAGACATTACTACCTTGAAGTTCAGATCTATCCATGCTAA
TGGAAATGTAACTGGAACTGACTCTGATGATAAAATCAAGGACCATCAGACAAGATCATGCACT
AGGAAACTTTGCTTCCAAATGAAGGCACCAACATTTAGAATTTCTGCTTATTCTAAGGTGTGAA
GTTTTTCAACATGAGTGGCCTTGGGGACAGTTCATCCGACCCTGCTAACCCAGACTCACATAAG
AGAAAAGGATCGCCATGTGACACACTGGCATCAAGCACTGAAAAGAGGCGCAGGGAGCAAGAAA
ATAAATATTTAGAAGAACTAGCTGAGTTACTGTCTGCCAACATCAGTGACATTGACAGTTTGAG
TGTAAAACCAGACAAATGCAAGATTTTGAAGAAAACAGTCGATCAGATACAGCTAATGAAGAGA
ATGGAACAAGAAAAATCAACAACTGATGATGATGTTCAGAAATCAGATATCTCATCGAGTAGTC
AAGGAGTAATAGAAAAGGAATCCTTGGGACCTCTTCTTTTGGAGGCTTTGGATGGATTTTTCTT
TGTTGTGAACTGTGAAGGGAGAATTGTATTTGTGTCAGAGAATGTGACCAGCTACTTGGGTTAC
AATCAGGAGGAATTAATGAATACCAGCGTCTACAGCATACTGCACGTGGGAGATCATGCAGAAT
TTGTCAAGAATCTGCTACCAAAATCCCTAGTAAATGGAGTTCCTTGGCCTCAAGAGGCAACACG
CCGAAATAGCCATACTTTTAACTGCAGGATGCTAATTCACCCTCCAGATGAGCCAGGTACTGAG
AACCAAGAAGCCTGCCAACGGTATGAAGTAATGCAGTGTTTCACTGTGTCACAGCCAAAATCGA
TTCAAGAAGATGGAGAAGATTTCCAGTCATGTTTGATTTGTATTGCACGGAGATTACCTCGGCC
TCCAGCTATTACGGGTGTAGAATCGTTTATGACAAAGCAAGATACTACAGGTAAAATCATCTCT
ATCGATACTAGTTCTCTGAGAGCTGCTGGCAGAACTGGCTGGGAAGATTTAGTGAGAAAATGCA
TTTATGCATTTTTCCAACCTCAGGGCAGAGAGCCATCTTATGCCAGACAACTGTTTCAAGAAGT
GATGACTCGTGGCACTGCCTCCAGCCCATCCTATAGATTCATATTGAATGATGGGACAATGCTT
AGCGCCCACACCAAGTGTAAACTTTGCTACCCTCAAAGTCCAGACATGCAGCCTTTCATCATGG
GAATTCATATCATCGACAGGGAACACAGTGGGCTTTCTCCTCAAGATGACACTAATTCTGGAAT
GTCAATTCCCCGAGTAAACCCCTCAGTCAATCCTAGTATCTCTCCAGCTCATGGTGTGGCCCGT
TCATCCACATTGCCACCATCCAACAGCAGCATGGTATCCACAAGAGTAAACCGCCATCAGAGCT
CAGACCTTCATAGCAGCAGTAGTCATAGTAATTCTAGCAACAACCAAGGGAGTTTTGGATGCTC
ACCTGGAAATCAGATTGTAGCCAATGTTGCCTTAAACCAGGGACAGGCCAGTTCCCAGAGCAGT
AACCCCTCTTTAAACCTCAATAATTCTCCTATGGAAGGTACAGGAATTTCCCTAGCACAGTTCA
TGTCTCCAAGGAGACAGGTTACTTCTGGCTTGGCAACAAGGGCCAGGATGCCAAACAATTCATT
TCCTCCAAATATTCCAACATTAAATTCCCCAGTTGGCATGACAAGTAGTGCCTGTAATAATAGT
AATCGATCTTATTCAAACATCCCTGTAACATCTTTACAGGGCATGAATGAAGGACCCAATAACT
CTGTTGGCTTCTCTGCCAGTTCTCCAGTCCTCAGGCAGATGAGCTCACAGAATTCACCTAGTAG
ATTAAATATACAACCAGCAAAAGCTGAGTCCAAAGATAACAAAGAGATTGCATCCATTTTAAAT
GAAATGATACAGTCTGACAACAGTGCTAGTGATAGCAAACCCCTGGATTCAGGGCTTCTGCATA
ACAATGACAGACTCTCAGATGGAGACAGTAAATACTCTCAAACCAGTCACAAACTAGTGCAGCT
TTTGACAACAACTGCAGAACAGCAGTTACGGCATGCTGATATAGACACAAGCTGCAAAGAAGTA
CTGTCTTGCACGGGCACTTCCAGCTCTGCCTCTGCTAACTCTTCAGGAGGTACTTGCCCCTCCT
CTCATAGCTCGCTGACAGAGCGGCACAAAATTCTGCACCGGCTCTTACAAGAGGGAAGTCCCTC
AGATATCACCACTTTGTCCGTGGAGCCCGATAAAAAGGACAGTGCATCTACTTCTGTGTCAGTA
ACTGGACAGGCCCAAGGAAACTCCAATATAAAACTAGAACTGGATACTTCAAAGAAAAAAGAAT
CAAAAGACCATCAGCTCCTGCGCTACCTTTTAGACAAAGATGAGAAAGATTTAAGATCAACTCC
AAACCTTAGCCTGGATGATGTAAAGGTGAAAGTGGAAAAGAAAGATCAGATGGATCCTTGTAAC
ACAAACCCAACCCCGATGACCAAACCCGCTCCTGAAGAGATTAAACTGGAGTCCCAGAGCCAGT
TTACAGCTGACCTTGAGCAGTTTGATCAGTTACTGCCCACTCTGGAGAAGGCAGCACAGCTGCC
AGGCCTGTGTGAGACAGACAGGATGGATGCTACAGTCACCAGTGTAACTGTCAAATCGGAGATC
CTACCAGCTTCACTTCAGTCCACCACTGCCAGACCCACTTCCAGGCTGAATAGATTGCCTGAAC
TGGAATTGGAAGCAATTGATAACCAGTTTGGACAACCAGGAACAGGTGACCAGATTCCATGGGC
AAATAATGCTGTGACAGCTATTAATCAGAATAAAGCAGAAGACCAGTGTATCAGTTCACAATTA
GATGAGCTTCTCTGTCCACCAACAACAGTAGAAGGAAGAAATGATGAGAAGGCTCTTCTGGAAC
AACTGGTGTCCTTCCTCAGTGGCAAAGATGAAACTGAGCTTGCTGAACTAGACAGAGCACTGGG
AATTGACAAACTTGTTCAGGGCGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAGCAA
GCAACACCACCTCTAATGATGGAAGAAAGACCCAACCTCTATTCACAGCCTTACTCTTCTCCTT
CTCCTACTGCCAATCTCCCTAGCCCATTCCAAGGCATGGTCAGGCAGAAACCTTCACTGGGGAC
TATGCCTGTTCAAGTAACACCTCCCAGAGGTGCTTTTTCACCTGGCATGGGTATGCAGCCCAGG
CAAACTCTAAACAGACCTCCAGCTGCACCTAACCAACTTAGACTTCAACTACAACAGCGGTTAC
AGGGACAGCAGCAGTTGCTACACCAAAACCGACACGCTATCTTGAATCAGTTTGCAGCAACTGC
TCCTGTTGGCATCAACATGAGATCAGGCATGCAGCAACAAATTACACCTCAGCCACCTCTGAAT
GCGCAAATGTTGGCACAACGTCAGCGGGAGTTGTACAGTCAGCAGCACCGACAGAGGCAGCTTA
TACAGCAGCAGAGGGCCATGCTCATGAGGCAACAAAGCTTTGGGAACAACCTCCCTCCCTCATC
TGGACTGCCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTAC
CCACCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCATTTTCTCAACTGG
CAGCAAATCCTGATGCAGCCTTGGCCACCCGCAACAGCATGGTGAACAGAGGCATGGCAGGAAA
CATGGGAGGACAGTTTGGCACTGGAATCAACCCTCAGATGCAGCAGAATGTCTTCCAGTATCCA
GGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGTCCTGGGAGCTCCA
TGGTGCCAATGCCAATCCCTCCCCCTCAGAGCTCTCTGCTCCAGCAAACTCCACCTGCTTCTGG
GTACCAGTCACCAGACATGAAGGCCTGGCAACAAGGAGCAATAGGAAACAACAATGTGTTCAAT
CAAGCTGTCCAGAACCAGCCTACACCTGCACAGCCAGGAGTGTACAACAATATGAGCATCACCG
TGTCCATGGCAGGTGGAAACACAAATGTTCAGAACATGAACCCAATGATGGGCCAGATGCAGAT
GAGCTCGTTGCAGATGCCAGGAATGAACGCTGTGTGCCCTGAGCAGATAAATGATCCAGCACTG
AGACACACAGGCCTCTACTGCAACCAGCTTTCATCCACTGACCTTCTCAAAACAGAAGCAGATG
GAACCCAGGACAAGAAGACAGAAGAGTTCTTCTCTGTGGTGACTACAGACTAGAGGAATGCTCT
ACAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGAC
CCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAACCCACGTCAGGACCACAGACCCCCC
AGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAAAGGAATGTGA
AATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATA
TCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAGAAA
GAAAAAAAATGTTCACTTTTGTTGGGAGATTGAGAGATGCTTTTGTTTCTTTGTAAAGGCCTTG
GATATTAGAAACAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCAAATTTAATTATTCTTA
TTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGAAGGAGAACCAAAACAGCA
AGTTCCAAGGGGAAGACGAAGCTCCACCTCGCTGGCTCAGTCCTGACCCTGCCCAGGAAGATAG
GCCCATGGGGCTTTGCCTGTGTCCGTCCACCAAAGGCTGTCACGTTCCTCAAAACCAACAGCCC
TCCCTACCCCAACCCCAGGCAGCTTGTATGTACAATCAGCTTCTTCAAGCAACTCTTTATCTGT
TGGCTTCAAGATAATATTTTGCCTCCACATATGTACCCTTTCTCCTTTTTTTAAAGATGGATTT
AAACCAAGATGCCTCCAGGAAAGAGGATGATATTCACAGAGGAATCCAAAAAATACAGTTTGGG
AAAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGATGTGAGTTCTGTCAATTATTGT
AGATACAGTTTCCTGATTAAATCCGGCGAAAAAGGCAGCCTGTTCTTTCTGCTTTTATTGTATT
AACAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATTCAAGTAGCTTATTTT
TAATCTCACTGTAAATATATTTGATTTCTTGTAGAAATTGATTTCTTTCTGTTTAATTTTATGC
TTTTAATATCATATTCTTGATTTTTCTAAATTTGTGTGAAATATAACATTGATTGAATTGCAGT
TGAATTTGGCTAGTAATATTTCATTATTTTAGCAATTGTGATGCCATGTGTGGATTTACTTTGG
GGCTCATATCGATGTGGCACTGCCAGAAAGAGCCATTCCAGCTGAGCTAGAGCAGACTACCCCA
GAGTGTCCAGGATCACCCAGCCAGAAATGCACATGCCGCTTGTACAGAGGGAAATTAGTGCTCA
AAGAAAATCTGCTGTTTTTCTTAGGTTGACTTTGGGAATTTGAGTTTCCATCTGTGCAAATATA
AATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATGTTTTCCCTTTGTGTCCTGTCATTCGG
CCACGTCCCATCTCATCCTGGTCTCTGAGAAAGGAGCCAGTGAACTGACTTTCTAGTTCTAGAA
GTTCCACCACAGGCCAGGAAAGCTTGAGAAAGCATTGTGTGGAAGAAGCAAAGTAGACCCCCAT
CACTCACCATTACCTGCATCCCTGGGCCTGTGAACGATGACAACACTGACCTTCTGCACCAGCT
ACCTCTGCTTGCGGCAGAGAAAAGGCCATAAGAACCAACATGGATGAGGAGCATGGACTCAGAC
TTCAAGGAAGAAGCCATTTCCCCAGGTCCTCCTTTCTGCATCTCACCTCCCCTAGTTTCAGATA
ACTCCATTGAACAGCATCTATTCGGAAACTATACCGAATAAAAAAAAAATTGATGGAAGGGCTC
ACATGGGTAGCAACTATGAAACAGAAATAGGACACTCAGTCAAAAACATTATCTCTTTTAGTTT
TTCAGAAAATGCATCCTTGATTTCATTAATTTCCAGCTTGAAAGCCCAGCCATATTACTCTAGT
CCCTACCAAACTGCTCTAGGAGGCCATTTCCATTGTTTGTGATTTTTAGATGTGCAGTCATCAG
GAAGTTCACCCTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGA
ACTAGAAAAGAAAAGCAGTAAGGAAAATTGGAGATGCTAGCATCCTTCCCCATCCCAACTGCAC
CTTAAAGTATGCATGTCACCTTCAAGGTTTTATAATTGCACTGTTTGTTTTATGTATGTACAGA
TTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCC
ATAGGAAATTCACTTTTCCAGCTACTGAATAGAATCTGTTTAACAACCTCA

hide sequence

RefSeq Acc Id:

XM_021724642 ⟹ XP_021580317

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,234,430 - 63,471,108 (+)	NCBI
SpeTri2.0	NW_004936493	7,370,450 - 7,605,753 (-)	NCBI

Sequence:

show sequence

AGGGGGAGCCGGAAGTCAGCGCGGGCGCCCCTCGGCCCCGAGGAGCGCCGTGACCTTGGCCAGC
CCGCCAACCTCTGCGAGTCTCGTCTCCTGCACCGCGAAATGGGGGCGACCCCGGCGTACCTCTC
CGTAGGCGCAGCCTTCGACGGCACTTGTGCTTAGCCCCGCGCTCTTGCCCTCTCTGCCCGGGAC
CGGGGACTTGGGAGGTAGAAATGGGTGGATAAAGCCGATTTTCCTGTTACGACTGGGGTTTGGT
CCCTTTCCTGGGATTCTGCCCGAAAGGACCTAGGAAGGGAAGCAAACGTGTTGACTAGCCGATT
GGGAGGTGGGGTTGGTTAGTGGTCAGTGACAGAACTCTCCTGGTCCCTTGGAAGAGACATAGAG
AAATCGGACACCAGGGTCCCTCGTCCTTAACCACCCGGCTGTGGTGTTTTTCTTTCTTTTTTCC
TTTTCTTTTTTCCCCATTTTCTTTTAATAAAAGCAGTCACTCCCATGGGTCAGACACTGACTAG
TCTAAGGATGTTGGAGGGAGGACGGAGGGGTTGACAAGGCAGAGGACAGGCCGCCGTGCTGGGG
CCGCAGAGTTTGGTGGGGAGGAAAACTTTAAACTGGAGAGTCTGTGATCCTTTCTTGCCCGCCT
CTCCTCCTTTATTGTGGAGGCGTTGAAGAGGCAGGTGCCCTTGTGGAGAAGGTGACACTTTTTC
TTTTGAGATAGTGAATTTTTAATGTCGAGTATTTGGTTGGTGAATGAATTGCGGCCCCAGCACC
TCAGTGGATGGCAAGAGGAACTCTTTGGCCATGATTTGTGAGGCCTGATGCTTAGACTTAAGTG
ATGAAGAAAATCAAGCGTCCGTGCAAGACATTACTACCTTGAAGTTCAGATCTATCCATGCTAA
TGGAAATGTAACTGGAACTGACTCTGATGATAAAATCAAGGACCATCAGACAAGATCATGCACT
AGGAAACTTTGCTTCCAAATGAAGGCACCAACATTTAGAATTTCTGCTTATTCTAAGGTGTGAA
GTTTTTCAACATGAGTGGCCTTGGGGACAGTTCATCCGACCCTGCTAACCCAGACTCACATAAG
AGAAAAGGATCGCCATGTGACACACTGGCATCAAGCACTGAAAAGAGGCGCAGGGAGCAAGAAA
ATAAATATTTAGAAGAACTAGCTGAGTTACTGTCTGCCAACATCAGTGACATTGACAGTTTGAG
TGTAAAACCAGACAAATGCAAGATTTTGAAGAAAACAGTCGATCAGATACAGCTAATGAAGAGA
ATGGAACAAGAAAAATCAACAACTGATGATGATGTTCAGAAATCAGATATCTCATCGAGTAGTC
AAGGAGTAATAGAAAAGGAATCCTTGGGACCTCTTCTTTTGGAGGCTTTGGATGGATTTTTCTT
TGTTGTGAACTGTGAAGGGAGAATTGTATTTGTGTCAGAGAATGTGACCAGCTACTTGGGTTAC
AATCAGGAGGAATTAATGAATACCAGCGTCTACAGCATACTGCACGTGGGAGATCATGCAGAAT
TTGTCAAGAATCTGCTACCAAAATCCCTAGTAAATGGAGTTCCTTGGCCTCAAGAGGCAACACG
CCGAAATAGCCATACTTTTAACTGCAGGATGCTAATTCACCCTCCAGATGAGCCAGGTACTGAG
AACCAAGAAGCCTGCCAACGGTATGAAGTAATGCAGTGTTTCACTGTGTCACAGCCAAAATCGA
TTCAAGAAGATGGAGAAGATTTCCAGTCATGTTTGATTTGTATTGCACGGAGATTACCTCGGCC
TCCAGCTATTACGGGTGTAGAATCGTTTATGACAAAGCAAGATACTACAGGTAAAATCATCTCT
ATCGATACTAGTTCTCTGAGAGCTGCTGGCAGAACTGGCTGGGAAGATTTAGTGAGAAAATGCA
TTTATGCATTTTTCCAACCTCAGGGCAGAGAGCCATCTTATGCCAGACAACTGTTTCAAGAAGT
GATGACTCGTGGCACTGCCTCCAGCCCATCCTATAGATTCATATTGAATGATGGGACAATGCTT
AGCGCCCACACCAAGTGTAAACTTTGCTACCCTCAAAGTCCAGACATGCAGCCTTTCATCATGG
GAATTCATATCATCGACAGGGAACACAGTGGGCTTTCTCCTCAAGATGACACTAATTCTGGAAT
GTCAATTCCCCGAGTAAACCCCTCAGTCAATCCTAGTATCTCTCCAGCTCATGGTGTGGCCCGT
TCATCCACATTGCCACCATCCAACAGCAGCATGGTATCCACAAGAGTAAACCGCCATCAGAGCT
CAGACCTTCATAGCAGCAGTAGTCATAGTAATTCTAGCAACAACCAAGGGAGTTTTGGATGCTC
ACCTGGAAATCAGATTGTAGCCAATGTTGCCTTAAACCAGGGACAGGCCAGTTCCCAGAGCAGT
AACCCCTCTTTAAACCTCAATAATTCTCCTATGGAAGGTACAGGAATTTCCCTAGCACAGTTCA
TGTCTCCAAGGAGACAGGTTACTTCTGGCTTGGCAACAAGGGCCAGGATGCCAAACAATTCATT
TCCTCCAAATATTCCAACATTAAATTCCCCAGTTGGCATGACAAGTAGTGCCTGTAATAATAGT
AATCGATCTTATTCAAACATCCCTGTAACATCTTTACAGGGCATGAATGAAGGACCCAATAACT
CTGTTGGCTTCTCTGCCAGTTCTCCAGTCCTCAGGCAGATGAGCTCACAGAATTCACCTAGTAG
ATTAAATATACAACCAGCAAAAGCTGAGTCCAAAGATAACAAAGAGATTGCATCCATTTTAAAT
GAAATGATACAGTCTGACAACAGTGCTAGTGATAGCAAACCCCTGGATTCAGGGCTTCTGCATA
ACAATGACAGACTCTCAGATGGAGACAGTAAATACTCTCAAACCAGTCACAAACTAGTGCAGCT
TTTGACAACAACTGCAGAACAGCAGTTACGGCATGCTGATATAGACACAAGCTGCAAAGAAGTA
CTGTCTTGCACGGGCACTTCCAGCTCTGCCTCTGCTAACTCTTCAGGAGGTACTTGCCCCTCCT
CTCATAGCTCGCTGACAGAGCGGCACAAAATTCTGCACCGGCTCTTACAAGAGGGAAGTCCCTC
AGATATCACCACTTTGTCCGTGGAGCCCGATAAAAAGGACAGTGCATCTACTTCTGTGTCAGTA
ACTGGACAGGCCCAAGGAAACTCCAATATAAAACTAGAACTGGATACTTCAAAGAAAAAAGAAT
CAAAAGACCATCAGCTCCTGCGCTACCTTTTAGACAAAGATGAGAAAGATTTAAGATCAACTCC
AAACCTTAGCCTGGATGATGTAAAGGTGAAAGTGGAAAAGAAAGATCAGATGGATCCTTGTAAC
ACAAACCCAACCCCGATGACCAAACCCGCTCCTGAAGAGATTAAACTGGAGTCCCAGAGCCAGT
TTACAGCTGACCTTGAGCAGTTTGATCAGTTACTGCCCACTCTGGAGAAGGCAGCACAGCTGCC
AGGCCTGTGTGAGACAGACAGGATGGATGCTACAGTCACCAGTGTAACTGTCAAATCGGAGATC
CTACCAGCTTCACTTCAGTCCACCACTGCCAGACCCACTTCCAGGCTGAATAGATTGCCTGAAC
TGGAATTGGAAGCAATTGATAACCAGTTTGGACAACCAGGAACAGGTGACCAGATTCCATGGGC
AAATAATGCTGTGACAGCTATTAATCAGAATAAAGCAGAAGACCAGTGTATCAGTTCACAATTA
GATGAGCTTCTCTGTCCACCAACAACAGTAGAAGGAAGAAATGATGAGAAGGCTCTTCTGGAAC
AACTGGTGTCCTTCCTCAGTGGCAAAGATGAAACTGAGCTTGCTGAACTAGACAGAGCACTGGG
AATTGACAAACTTGTTCAGGGCGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAGCAA
GCAACACCACCTCTAATGATGGAAGAAAGACCCAACCTCTATTCACAGCCTTACTCTTCTCCTT
CTCCTACTGCCAATCTCCCTAGCCCATTCCAAGGCATGGTCAGGCAGAAACCTTCACTGGGGAC
TATGCCTGTTCAAGTAACACCTCCCAGAGGTGCTTTTTCACCTGGCATGGGTATGCAGCCCAGG
CAAACTCTAAACAGACCTCCAGCTGCACCTAACCAACTTAGACTTCAACTACAACAGCGGTTAC
AGGGACAGCAGCAGTTGCTACACCAAAACCGACACGCTATCTTGAATCAGTTTGCAGCAACTGC
TCCTGTTGGCATCAACATGAGATCAGGCATGCAGCAACAAATTACACCTCAGCCACCTCTGAAT
GCGCAAATGTTGGCACAACGTCAGCGGGAGTTGTACAGTCAGCAGCACCGACAGAGGCAGCTTA
TACAGCAGCAGAGGGCCATGCTCATGAGGCAACAAAGCTTTGGGAACAACCTCCCTCCCTCATC
TGGACTGCCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTAC
CCACCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCATTTTCTCAACTGG
CAGCAAATCCTGATGCAGCCTTGGCCACCCGCAACAGCATGGTGAACAGAGGCATGGCAGGAAA
CATGGGAGGACAGTTTGGCACTGGAATCAACCCTCAGATGCAGCAGAATGTCTTCCAGTATCCA
GGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGTCCTGGGAGCTCCA
TGGTGCCAATGCCAATCCCTCCCCCTCAGAGCTCTCTGCTCCAGCAAACTCCACCTGCTTCTGG
GTACCAGTCACCAGACATGAAGGCCTGGCAACAAGGAGCAATAGGAAACAACAATGTGTTCAAT
CAAGCTGTCCAGAACCAGCCTACACCTGCACAGCCAGGAGTGTACAACAATATGAGCATCACCG
TGTCCATGGCAGGTGGAAACACAAATGTTCAGAACATGAACCCAATGATGGGCCAGATGCAGAT
GAGCTCGTTGCAGATGCCAGGAATGAACGCTGTGTGCCCTGAGCAGATAAATGATCCAGCACTG
AGACACACAGGCCTCTACTGCAACCAGCTTTCATCCACTGACCTTCTCAAAACAGAAGCAGATG
GAACCCAGGACAAGAAGACAGAAGAGTTCTTCTCTGTGGTGACTACAGACTAGAGGAATGCTCT
AGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCT
TACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAACCCACGTCAGGACCACAGACCCCCCAGG
CCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAAAGGAATGTGAAAT
TTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATATCT
CAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCA

hide sequence

RefSeq Acc Id:

XM_021724643 ⟹ XP_021580318

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,373,933 - 63,471,108 (+)	NCBI
SpeTri2.0	NW_004936493	7,370,433 - 7,462,201 (-)	NCBI

Sequence:

show sequence

AAGAAAATAAATATTTAGAAGAACTAGCTGAGTTACTGTCTGCCAACATCAGTGACATTGACAG
TTTGAGTGTAAAACCAGACAAATGCAAGATTTTGAAGAAAACAGTCGATCAGATACAGCTAATG
AAGAGAATGGAACAAGTTTCTTTATTACAGAAAAATCAACAACTGATGATGATGTTCAGAAATC
AGATATCTCATCGAGTAGTCAAGGAGTAATAGAAAAGGAATCCTTGGGACCTCTTCTTTTGGAG
GCTTTGGATGGATTTTTCTTTGTTGTGAACTGTGAAGGGAGAATTGTATTTGTGTCAGAGAATG
TGACCAGCTACTTGGGTTACAATCAGGAGGAATTAATGAATACCAGCGTCTACAGCATACTGCA
CGTGGGAGATCATGCAGAATTTGTCAAGAATCTGCTACCAAAATCCCTAGTAAATGGAGTTCCT
TGGCCTCAAGAGGCAACACGCCGAAATAGCCATACTTTTAACTGCAGGATGCTAATTCACCCTC
CAGATGAGCCAGGTACTGAGAACCAAGAAGCCTGCCAACGGTATGAAGTAATGCAGTGTTTCAC
TGTGTCACAGCCAAAATCGATTCAAGAAGATGGAGAAGATTTCCAGTCATGTTTGATTTGTATT
GCACGGAGATTACCTCGGCCTCCAGCTATTACGGGTGTAGAATCGTTTATGACAAAGCAAGATA
CTACAGGTAAAATCATCTCTATCGATACTAGTTCTCTGAGAGCTGCTGGCAGAACTGGCTGGGA
AGATTTAGTGAGAAAATGCATTTATGCATTTTTCCAACCTCAGGGCAGAGAGCCATCTTATGCC
AGACAACTGTTTCAAGAAGTGATGACTCGTGGCACTGCCTCCAGCCCATCCTATAGATTCATAT
TGAATGATGGGACAATGCTTAGCGCCCACACCAAGTGTAAACTTTGCTACCCTCAAAGTCCAGA
CATGCAGCCTTTCATCATGGGAATTCATATCATCGACAGGGAACACAGTGGGCTTTCTCCTCAA
GATGACACTAATTCTGGAATGTCAATTCCCCGAGTAAACCCCTCAGTCAATCCTAGTATCTCTC
CAGCTCATGGTGTGGCCCGTTCATCCACATTGCCACCATCCAACAGCAGCATGGTATCCACAAG
AGTAAACCGCCATCAGAGCTCAGACCTTCATAGCAGCAGTAGTCATAGTAATTCTAGCAACAAC
CAAGGGAGTTTTGGATGCTCACCTGGAAATCAGATTGTAGCCAATGTTGCCTTAAACCAGGGAC
AGGCCAGTTCCCAGAGCAGTAACCCCTCTTTAAACCTCAATAATTCTCCTATGGAAGGTACAGG
AATTTCCCTAGCACAGTTCATGTCTCCAAGGAGACAGGTTACTTCTGGCTTGGCAACAAGGGCC
AGGATGCCAAACAATTCATTTCCTCCAAATATTCCAACATTAAATTCCCCAGTTGGCATGACAA
GTAGTGCCTGTAATAATAGTAATCGATCTTATTCAAACATCCCTGTAACATCTTTACAGGGCAT
GAATGAAGGACCCAATAACTCTGTTGGCTTCTCTGCCAGTTCTCCAGTCCTCAGGCAGATGAGC
TCACAGAATTCACCTAGTAGATTAAATATACAACCAGCAAAAGCTGAGTCCAAAGATAACAAAG
AGATTGCATCCATTTTAAATGAAATGATACAGTCTGACAACAGTGCTAGTGATAGCAAACCCCT
GGATTCAGGGCTTCTGCATAACAATGACAGACTCTCAGATGGAGACAGTAAATACTCTCAAACC
AGTCACAAACTAGTGCAGCTTTTGACAACAACTGCAGAACAGCAGTTACGGCATGCTGATATAG
ACACAAGCTGCAAAGAAGTACTGTCTTGCACGGGCACTTCCAGCTCTGCCTCTGCTAACTCTTC
AGGAGGTACTTGCCCCTCCTCTCATAGCTCGCTGACAGAGCGGCACAAAATTCTGCACCGGCTC
TTACAAGAGGGAAGTCCCTCAGATATCACCACTTTGTCCGTGGAGCCCGATAAAAAGGACAGTG
CATCTACTTCTGTGTCAGTAACTGGACAGGCCCAAGGAAACTCCAATATAAAACTAGAACTGGA
TACTTCAAAGAAAAAAGAATCAAAAGACCATCAGCTCCTGCGCTACCTTTTAGACAAAGATGAG
AAAGATTTAAGATCAACTCCAAACCTTAGCCTGGATGATGTAAAGGTGAAAGTGGAAAAGAAAG
ATCAGATGGATCCTTGTAACACAAACCCAACCCCGATGACCAAACCCGCTCCTGAAGAGATTAA
ACTGGAGTCCCAGAGCCAGTTTACAGCTGACCTTGAGCAGTTTGATCAGTTACTGCCCACTCTG
GAGAAGGCAGCACAGCTGCCAGGCCTGTGTGAGACAGACAGGATGGATGCTACAGTCACCAGTG
TAACTGTCAAATCGGAGATCCTACCAGCTTCACTTCAGTCCACCACTGCCAGACCCACTTCCAG
GCTGAATAGATTGCCTGAACTGGAATTGGAAGCAATTGATAACCAGTTTGGACAACCAGGAACA
GGTGACCAGATTCCATGGGCAAATAATGCTGTGACAGCTATTAATCAGAATAAAGCAGAAGACC
AGTGTATCAGTTCACAATTAGATGAGCTTCTCTGTCCACCAACAACAGTAGAAGGAAGAAATGA
TGAGAAGGCTCTTCTGGAACAACTGGTGTCCTTCCTCAGTGGCAAAGATGAAACTGAGCTTGCT
GAACTAGACAGAGCACTGGGAATTGACAAACTTGTTCAGGGCGGTGGATTAGATGTATTATCAG
AGAGATTTCCACCACAGCAAGCAACACCACCTCTAATGATGGAAGAAAGACCCAACCTCTATTC
ACAGCCTTACTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCATTCCAAGGCATGGTCAGG
CAGAAACCTTCACTGGGGACTATGCCTGTTCAAGTAACACCTCCCAGAGGTGCTTTTTCACCTG
GCATGGGTATGCAGCCCAGGCAAACTCTAAACAGACCTCCAGCTGCACCTAACCAACTTAGACT
TCAACTACAACAGCGGTTACAGGGACAGCAGCAGTTGCTACACCAAAACCGACACGCTATCTTG
AATCAGTTTGCAGCAACTGCTCCTGTTGGCATCAACATGAGATCAGGCATGCAGCAACAAATTA
CACCTCAGCCACCTCTGAATGCGCAAATGTTGGCACAACGTCAGCGGGAGTTGTACAGTCAGCA
GCACCGACAGAGGCAGCTTATACAGCAGCAGAGGGCCATGCTCATGAGGCAACAAAGCTTTGGG
AACAACCTCCCTCCCTCATCTGGACTGCCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTG
CTCCACAGCAATTCCCCTACCCACCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTAC
CAGCCCATTTTCTCAACTGGCAGCAAATCCTGATGCAGCCTTGGCCACCCGCAACAGCATGGTG
AACAGAGGCATGGCAGGAAACATGGGAGGACAGTTTGGCACTGGAATCAACCCTCAGATGCAGC
AGAATGTCTTCCAGTATCCAGGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATC
TCTAAGTCCTGGGAGCTCCATGGTGCCAATGCCAATCCCTCCCCCTCAGAGCTCTCTGCTCCAG
CAAACTCCACCTGCTTCTGGGTACCAGTCACCAGACATGAAGGCCTGGCAACAAGGAGCAATAG
GAAACAACAATGTGTTCAATCAAGCTGTCCAGAACCAGCCTACACCTGCACAGCCAGGAGTGTA
CAACAATATGAGCATCACCGTGTCCATGGCAGGTGGAAACACAAATGTTCAGAACATGAACCCA
ATGATGGGCCAGATGCAGATGAGCTCGTTGCAGATGCCAGGAATGAACGCTGTGTGCCCTGAGC
AGATAAATGATCCAGCACTGAGACACACAGGCCTCTACTGCAACCAGCTTTCATCCACTGACCT
TCTCAAAACAGAAGCAGATGGAACCCAGCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAG
TGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAA
AACCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGAC
TGAATAACCACTTTTAAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATA
TTATATATTTTTCTGAGATTTTTGATATCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTG
GAGCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_040271395 ⟹ XP_040127329

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,234,429 - 63,471,108 (+)	NCBI

RefSeq Acc Id:

XM_040271396 ⟹ XP_040127330

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	63,234,427 - 63,471,108 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021580315	(Get FASTA)	NCBI Sequence Viewer
	XP_021580316	(Get FASTA)	NCBI Sequence Viewer
	XP_021580317	(Get FASTA)	NCBI Sequence Viewer
	XP_021580318	(Get FASTA)	NCBI Sequence Viewer
	XP_040127329	(Get FASTA)	NCBI Sequence Viewer
	XP_040127330	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005382.3
	ENSSTOP00000031631.1
GenBank Protein	KAG3267679	(Get FASTA)	NCBI Sequence Viewer
	KAG3267680	(Get FASTA)	NCBI Sequence Viewer
	KAG3267681	(Get FASTA)	NCBI Sequence Viewer
	KAG3267682	(Get FASTA)	NCBI Sequence Viewer
	KAG3267683	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021580315 ⟸ XM_021724640

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKP
DKCKILKKTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVN
CEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATRRNS
HTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRPPAI
TGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTR
GTASSPSYRFILNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIP
RVNPSVNPSISPAHGVARSSTLPPSNSSMVSTRVNRHQSSDLHSSSSHSNSSNNQGSFGCSPGN
QIVANVALNQGQASSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRARMPNNSFPPN
IPTLNSPVGMTSSACNNSNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQNSPSRLNI
QPAKAESKDNKEIASILNEMIQSDNSASDSKPLDSGLLHNNDRLSDGDSKYSQTSHKLVQLLTT
TAEQQLRHADIDTSCKEVLSCTGTSSSASANSSGGTCPSSHSSLTERHKILHRLLQEGSPSDIT
TLSVEPDKKDSASTSVSVTGQAQGNSNIKLELDTSKKKESKDHQLLRYLLDKDEKDLRSTPNLS
LDDVKVKVEKKDQMDPCNTNPTPMTKPAPEEIKLESQSQFTADLEQFDQLLPTLEKAAQLPGLC
ETDRMDATVTSVTVKSEILPASLQSTTARPTSRLNRLPELELEAIDNQFGQPGTGDQIPWANNA
VTAINQNKAEDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDK
LVQGGGLDVLSERFPPQQATPPLMMEERPNLYSQPYSSPSPTANLPSPFQGMVRQKPSLGTMPV
QVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLLHQNRHAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLP
VQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPDAALATRNSMVNRGMAGNMGG
QFGTGINPQMQQNVFQYPGSGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQS
PDMKAWQQGAIGNNNVFNQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMGQMQMSSL
QMPGMNAVCPEQINDPALRHTGLYCNQLSSTDLLKTEADGTQVQQVQVFADVQCTVNLVGGDPY
LNQPGPLGTQKPTSGPQTPQAQQKSLLQQLLTE

hide sequence

RefSeq Acc Id:	XP_021580316 ⟸ XM_021724641
- Peptide Label:	isoform X3
- UniProtKB:	I3M749 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKP DKCKILKKTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVN CEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATRRNS HTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRPPAI TGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTR GTASSPSYRFILNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIP RVNPSVNPSISPAHGVARSSTLPPSNSSMVSTRVNRHQSSDLHSSSSHSNSSNNQGSFGCSPGN QIVANVALNQGQASSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRARMPNNSFPPN IPTLNSPVGMTSSACNNSNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQNSPSRLNI QPAKAESKDNKEIASILNEMIQSDNSASDSKPLDSGLLHNNDRLSDGDSKYSQTSHKLVQLLTT TAEQQLRHADIDTSCKEVLSCTGTSSSASANSSGGTCPSSHSSLTERHKILHRLLQEGSPSDIT TLSVEPDKKDSASTSVSVTGQAQGNSNIKLELDTSKKKESKDHQLLRYLLDKDEKDLRSTPNLS LDDVKVKVEKKDQMDPCNTNPTPMTKPAPEEIKLESQSQFTADLEQFDQLLPTLEKAAQLPGLC ETDRMDATVTSVTVKSEILPASLQSTTARPTSRLNRLPELELEAIDNQFGQPGTGDQIPWANNA VTAINQNKAEDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDK LVQGGGLDVLSERFPPQQATPPLMMEERPNLYSQPYSSPSPTANLPSPFQGMVRQKPSLGTMPV QVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLLHQNRHAILNQFAATAPVG INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLP VQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPDAALATRNSMVNRGMAGNMGG QFGTGINPQMQQNVFQYPGSGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQS PDMKAWQQGAIGNNNVFNQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMGQMQMSSL QMPGMNAVCPEQINDPALRHTGLYCNQLSSTDLLKTEADGTQDKKTEEFFSVVTTD hide sequence

RefSeq Acc Id:

XP_021580318 ⟸ XM_021724643

- Peptide Label:

isoform X4

- Sequence:

show sequence

MQDFEENSRSDTANEENGTSFFITEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFF
VVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATR
RNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRP
PAITGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEV
MTRGTASSPSYRFILNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGM
SIPRVNPSVNPSISPAHGVARSSTLPPSNSSMVSTRVNRHQSSDLHSSSSHSNSSNNQGSFGCS
PGNQIVANVALNQGQASSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRARMPNNSF
PPNIPTLNSPVGMTSSACNNSNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQNSPSR
LNIQPAKAESKDNKEIASILNEMIQSDNSASDSKPLDSGLLHNNDRLSDGDSKYSQTSHKLVQL
LTTTAEQQLRHADIDTSCKEVLSCTGTSSSASANSSGGTCPSSHSSLTERHKILHRLLQEGSPS
DITTLSVEPDKKDSASTSVSVTGQAQGNSNIKLELDTSKKKESKDHQLLRYLLDKDEKDLRSTP
NLSLDDVKVKVEKKDQMDPCNTNPTPMTKPAPEEIKLESQSQFTADLEQFDQLLPTLEKAAQLP
GLCETDRMDATVTSVTVKSEILPASLQSTTARPTSRLNRLPELELEAIDNQFGQPGTGDQIPWA
NNAVTAINQNKAEDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALG
IDKLVQGGGLDVLSERFPPQQATPPLMMEERPNLYSQPYSSPSPTANLPSPFQGMVRQKPSLGT
MPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLLHQNRHAILNQFAATA
PVGINMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSS
GLPVQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPDAALATRNSMVNRGMAGN
MGGQFGTGINPQMQQNVFQYPGSGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASG
YQSPDMKAWQQGAIGNNNVFNQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMGQMQM
SSLQMPGMNAVCPEQINDPALRHTGLYCNQLSSTDLLKTEADGTQQVQQVQVFADVQCTVNLVG
GDPYLNQPGPLGTQKPTSGPQTPQAQQKSLLQQLLTE

hide sequence

RefSeq Acc Id:	XP_021580317 ⟸ XM_021724642
- Peptide Label:	isoform X3
- UniProtKB:	I3M749 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKP DKCKILKKTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVN CEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATRRNS HTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRPPAI TGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTR GTASSPSYRFILNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIP RVNPSVNPSISPAHGVARSSTLPPSNSSMVSTRVNRHQSSDLHSSSSHSNSSNNQGSFGCSPGN QIVANVALNQGQASSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRARMPNNSFPPN IPTLNSPVGMTSSACNNSNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQNSPSRLNI QPAKAESKDNKEIASILNEMIQSDNSASDSKPLDSGLLHNNDRLSDGDSKYSQTSHKLVQLLTT TAEQQLRHADIDTSCKEVLSCTGTSSSASANSSGGTCPSSHSSLTERHKILHRLLQEGSPSDIT TLSVEPDKKDSASTSVSVTGQAQGNSNIKLELDTSKKKESKDHQLLRYLLDKDEKDLRSTPNLS LDDVKVKVEKKDQMDPCNTNPTPMTKPAPEEIKLESQSQFTADLEQFDQLLPTLEKAAQLPGLC ETDRMDATVTSVTVKSEILPASLQSTTARPTSRLNRLPELELEAIDNQFGQPGTGDQIPWANNA VTAINQNKAEDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDK LVQGGGLDVLSERFPPQQATPPLMMEERPNLYSQPYSSPSPTANLPSPFQGMVRQKPSLGTMPV QVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLLHQNRHAILNQFAATAPVG INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLP VQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPDAALATRNSMVNRGMAGNMGG QFGTGINPQMQQNVFQYPGSGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQTPPASGYQS PDMKAWQQGAIGNNNVFNQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMGQMQMSSL QMPGMNAVCPEQINDPALRHTGLYCNQLSSTDLLKTEADGTQDKKTEEFFSVVTTD hide sequence

RefSeq Acc Id:	XP_040127330 ⟸ XM_040271396
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040127329 ⟸ XM_040271395
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDP9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000031631 ⟸ ENSSTOT00000031257

Ensembl Acc Id:

ENSSTOP00000005382 ⟸ ENSSTOT00000006014

Protein Domains

bHLH PAS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005990	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006014.3	UniProtKB/TrEMBL
	ENSSTOT00000031257.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
	6.10.140.410	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	NCO_DUF1518	UniProtKB/TrEMBL
	NCOA1	UniProtKB/TrEMBL
	Nuc_rcpt_coact	UniProtKB/TrEMBL
	Nuc_rcpt_coact_Ncoa-typ	UniProtKB/TrEMBL
	Nuc_rcpt_coact_Ncoa_int_sf	UniProtKB/TrEMBL
	Nuclear_rcpt_coactivator	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS-like_dom_sf	UniProtKB/TrEMBL
	PAS_fold	UniProtKB/TrEMBL
	SRC/p160_LXXLL	UniProtKB/TrEMBL
NCBI Gene	Ncoa1	ENTREZGENE
PANTHER	PTHR10684	UniProtKB/TrEMBL
	PTHR10684:SF1	UniProtKB/TrEMBL
Pfam	DUF1518	UniProtKB/TrEMBL
	NCOA_u2	UniProtKB/TrEMBL
	Nuc_rec_co-act	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS_11	UniProtKB/TrEMBL
	SRC-1	UniProtKB/TrEMBL
PIRSF	Nuclear_receptor_coactivator	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
SMART	DUF1518	UniProtKB/TrEMBL
	HLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
	SSF55785	UniProtKB/TrEMBL
	SSF69125	UniProtKB/TrEMBL
UniProt	A0A287DDP9	ENTREZGENE, UniProtKB/TrEMBL
	I3M749	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)