Ncoa1 (nuclear receptor coactivator 1) - Rat Genome Database

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Gene: Ncoa1 (nuclear receptor coactivator 1) Chinchilla lanigera
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Symbol: Ncoa1
Name: nuclear receptor coactivator 1
RGD ID: 8990563
Description: ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH breast carcinoma (ortholog); Breast Neoplasms (ortholog); endometrial carcinoma (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,794,821 - 6,892,566 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,676,780 - 6,892,587 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Ncoa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,794,821 - 6,892,566 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,676,780 - 6,892,587 (+)NCBIChiLan1.0ChiLan1.0
NCOA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38224,491,254 - 24,770,702 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl224,491,254 - 24,770,702 (+)EnsemblGRCh38hg38GRCh38
GRCh37224,714,123 - 24,993,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,660,850 - 24,847,075 (+)NCBINCBI36hg18NCBI36
Build 34224,718,996 - 24,905,219NCBI
Celera224,648,250 - 24,833,882 (+)NCBI
Cytogenetic Map2p23.3NCBI
HuRef224,545,896 - 24,731,418 (+)NCBIHuRef
CHM1_1224,736,919 - 24,923,129 (+)NCBICHM1_1
T2T-CHM13v2.0224,525,913 - 24,805,480 (+)NCBI
Ncoa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,297,362 - 4,569,452 (-)NCBIGRCm39mm39
GRCm39 Ensembl124,297,362 - 4,527,182 (-)Ensembl
GRCm38124,247,362 - 4,477,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,247,362 - 4,477,182 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,247,362 - 4,484,060 (-)NCBIGRCm37mm9NCBIm37
MGSCv36124,257,424 - 4,491,127 (-)NCBImm8
Celera124,179,857 - 4,348,692 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
Ncoa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2627,232,609 - 27,507,992 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl627,232,611 - 27,475,664 (-)Ensembl
Rnor_6.0628,677,563 - 28,931,844 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,677,540 - 28,931,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0638,483,476 - 38,734,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4627,224,396 - 27,473,926 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1627,229,075 - 27,336,790 (-)NCBI
Celera626,704,021 - 26,946,167 (-)NCBICelera
Cytogenetic Map6q14NCBI
NCOA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A24,581,645 - 24,859,488 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,733,117 - 24,859,488 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A24,485,068 - 24,764,135 (+)NCBIMhudiblu_PPA_v0panPan3
NCOA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11718,880,676 - 19,124,300 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1718,880,383 - 19,122,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1718,777,980 - 19,021,230 (+)NCBI
ROS_Cfam_1.01719,302,445 - 19,397,682 (+)NCBI
ROS_Cfam_1.0 Ensembl1719,153,592 - 19,396,341 (+)Ensembl
UMICH_Zoey_3.11718,890,805 - 19,134,195 (+)NCBI
UNSW_CanFamBas_1.01718,899,937 - 19,143,634 (+)NCBI
UU_Cfam_GSD_1.01718,940,197 - 19,183,703 (+)NCBI
Ncoa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629263,234,427 - 63,471,108 (+)NCBI
SpeTri2.0NW_0049364937,368,393 - 7,605,754 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3113,997,236 - 114,251,078 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13113,997,214 - 114,251,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,230,135 - 121,286,004 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.23121,349,942 - 121,379,022 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11482,898,368 - 83,028,137 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1482,897,348 - 83,013,589 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604528,994,261 - 29,270,072 (+)NCBIVero_WHO_p1.0
Ncoa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247386,943,726 - 7,054,454 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247386,770,745 - 7,054,616 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018311   ⟹   ENSCLAP00000018132
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554696,794,821 - 6,892,566 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018312   ⟹   ENSCLAP00000018133
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554696,794,821 - 6,890,731 (+)Ensembl
RefSeq Acc Id: XM_005400388   ⟹   XP_005400445
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554696,676,780 - 6,892,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400389   ⟹   XP_005400446
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554696,676,780 - 6,892,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400390   ⟹   XP_005400447
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554696,676,780 - 6,890,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400391   ⟹   XP_005400448
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554696,676,780 - 6,890,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522653   ⟹   XP_013378107
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554696,676,780 - 6,892,587 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005400447   ⟸   XM_005400390
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400448   ⟸   XM_005400391
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400445   ⟸   XM_005400388
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005400446   ⟸   XM_005400389
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013378107   ⟸   XM_013522653
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000018132   ⟸   ENSCLAT00000018311
RefSeq Acc Id: ENSCLAP00000018133   ⟸   ENSCLAT00000018312


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000018132 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000018133 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018311 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000018312 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Ncoa1 ENTREZGENE
UniProt A0A8C2VN45_CHILA UniProtKB/TrEMBL
  A0A8C2VTI5_CHILA UniProtKB/TrEMBL