MAMMALIAN PHENOTYPE - ANNOTATIONS
The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term: abnormal orientation of cochlear hair cell stereociliary bundles
Accession: MP:0004522
browse the term
Definition: misorientation or rotation of inner and/or outer hair cell stereociliary bundles, resulting in defective planar cell polarity of the inner ear sensory epithelium
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Cdh23
cadherin related 23 (otocadherin)
IAGP
MGI
PMID:18339676
NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269
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Dchs1
dachsous cadherin related 1
IAGP
MGI
PMID:21303848
NCBI chr 7:105,402,196...105,437,562
Ensembl chr 7:105,402,197...105,436,861
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Dll1
delta like canonical Notch ligand 1
IAGP
MGI
PMID:16141228
NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134
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Dvl2
dishevelled segment polarity protein 2
IAGP
MGI
PMID:16116426 PMID:19008950
NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127
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Dvl3
dishevelled segment polarity protein 3
IAGP
MGI
PMID:19008950
NCBI chr16:20,335,694...20,352,763
Ensembl chr16:20,335,732...20,352,760
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Eya1
EYA transcriptional coactivator and phosphatase 1
IAGP
MGI
PMID:18678597
NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
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Fat4
FAT atypical cadherin 4
IAGP
MGI
PMID:18604206 PMID:21303848
NCBI chr 3:38,939,867...39,066,134
Ensembl chr 3:38,941,089...39,066,134
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Grxcr2
glutaredoxin, cysteine rich 2
IAGP
MGI
PMID:30157177
NCBI chr18:42,118,388...42,132,114
Ensembl chr18:42,118,388...42,132,114
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Jag2
jagged 2
IAGP
MGI
PMID:16141228
NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396
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Myo6
myosin VI
IAGP
MGI
PMID:28832620 PMID:31103816
NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
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Myo7a
myosin VIIA
IAGP
MGI
PMID:9435277 PMID:18339676
NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731
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Osbpl2
oxysterol binding protein-like 2
IAGP
MGI
PMID:35041619
NCBI chr 2:179,758,059...179,804,475
Ensembl chr 2:179,761,099...179,804,473
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Pcdh15
protocadherin 15
IAGP
MGI
PMID:16799054 PMID:18339676
NCBI chr10:72,932,003...74,485,663
Ensembl chr10:72,935,174...74,485,569
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Scrib
scribbled planar cell polarity
IAGP
MGI
PMID:21515572
NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
IAGP
MGI
PMID:19379695
NCBI chr 5:144,813,305...144,902,657
Ensembl chr 5:144,813,305...144,902,657
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Smurf2
SMAD specific E3 ubiquitin protein ligase 2
IAGP
MGI
PMID:19379695
NCBI chr11:106,710,887...106,811,544
Ensembl chr11:106,710,892...106,811,541
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Tomt
transmembrane O-methyltransferase
IAGP
MGI
PMID:18794526
NCBI chr 7:101,549,010...101,555,572
Ensembl chr 7:101,547,577...101,555,566
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Ush1c
USH1 protein network component harmonin
IAGP
MGI
PMID:18339676
NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927
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Ush1g
USH1 protein network component sans
IAGP
MGI
PMID:18339676
NCBI chr11:115,206,018...115,214,239
Ensembl chr11:115,206,018...115,212,867
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Vangl1
VANGL planar cell polarity 1
IAGP
MGI
PMID:18296642
NCBI chr 3:102,060,899...102,112,012
Ensembl chr 3:102,060,899...102,112,009
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Vangl2
VANGL planar cell polarity 2
IAGP
MGI
PMID:16116426 PMID:19008950 PMID:24135232
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
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Cdh23
cadherin related 23 (otocadherin)
IAGP
MGI
PMID:8790740
NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269
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Fgfr1
fibroblast growth factor receptor 1
IAGP
MGI
PMID:12194867
NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734
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Foxg1
forkhead box G1
IAGP
MGI
PMID:12194867
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
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Fzd3
frizzled class receptor 3
IAGP
MGI
PMID:16495441
NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912
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Fzd6
frizzled class receptor 6
IAGP
MGI
PMID:16495441
NCBI chr15:38,869,673...38,901,587
Ensembl chr15:38,869,429...38,901,583
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Jag2
jagged 2
IAGP
MGI
PMID:10080181
NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396
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Mob1a
MOB kinase activator 1A
IAGP
MGI
PMID:23143302
NCBI chr 6:83,303,016...83,320,758
Ensembl chr 6:83,302,998...83,320,758
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Mob1b
MOB kinase activator 1B
IAGP
MGI
PMID:23143302
NCBI chr 5:88,868,730...88,906,314
Ensembl chr 5:88,868,714...88,912,079
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Myo6
myosin VI
IAGP
MGI
PMID:23485424
NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
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Myo7a
myosin VIIA
IAGP
MGI
PMID:23251483
NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731
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Nr2f1
nuclear receptor subfamily 2, group F, member 1
IAGP
MGI
PMID:16914494
NCBI chr13:78,337,090...78,346,954
Ensembl chr13:78,337,092...78,347,876
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Pcdh15
protocadherin 15
IAGP
MGI
PMID:11124469
NCBI chr10:72,932,003...74,485,663
Ensembl chr10:72,935,174...74,485,569
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Ptk7
PTK7 protein tyrosine kinase 7
IAGP
MGI
PMID:15229603
NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430
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Ptprq
protein tyrosine phosphatase receptor type Q
IAGP
MGI
PMID:14534255
NCBI chr10:107,350,224...107,555,939
Ensembl chr10:107,352,910...107,555,912
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Sec24b
SEC24 homolog B, COPII coat complex component
IAGP
MGI
PMID:19966784
NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202
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Ush1c
USH1 protein network component harmonin
IAGP
MGI
PMID:20211154
NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927
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Vangl1
VANGL planar cell polarity 1
IAGP
MGI
PMID:18296642
NCBI chr 3:102,060,899...102,112,012
Ensembl chr 3:102,060,899...102,112,009
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Vangl2
VANGL planar cell polarity 2
IAGP
MGI
PMID:18296642 PMID:23986237
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
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Adgrv1
adhesion G protein-coupled receptor V1
IAGP
MGI
PMID:16775142 PMID:17329413
NCBI chr13:81,243,187...81,781,504
Ensembl chr13:81,243,187...81,781,273
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Bbs1
Bardet-Biedl syndrome 1
IAGP
MGI
PMID:16170314
NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656
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Bbs4
Bardet-Biedl syndrome 4
IAGP
MGI
PMID:16170314
NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791
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Cdh23
cadherin related 23 (otocadherin)
IAGP
MGI
PMID:8790740
NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269
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Celsr1
cadherin, EGF LAG seven-pass G-type receptor 1
IAGP
MGI
PMID:12842012
NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404
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Clrn1
clarin 1
IAGP
MGI
PMID:19414487
NCBI chr 3:58,751,449...58,792,633
Ensembl chr 3:58,751,449...58,792,761
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Cobl
cordon-bleu WH2 repeat
IAGP
MGI
PMID:30157434
NCBI chr11:12,186,676...12,415,022
Ensembl chr11:12,186,608...12,414,960
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Dchs1
dachsous cadherin related 1
IAGP
MGI
PMID:21303848
NCBI chr 7:105,402,196...105,437,562
Ensembl chr 7:105,402,197...105,436,861
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Dvl1
dishevelled segment polarity protein 1
IAGP
MGI
PMID:16116426 PMID:16571627
NCBI chr 4:155,931,829...155,943,760
Ensembl chr 4:155,931,859...155,943,760
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Dvl2
dishevelled segment polarity protein 2
IAGP
MGI
PMID:16116426 PMID:16571627
NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127
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Fat4
FAT atypical cadherin 4
IAGP
MGI
PMID:21303848
NCBI chr 3:38,939,867...39,066,134
Ensembl chr 3:38,941,089...39,066,134
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Fzd1
frizzled class receptor 1
IAGP
MGI
PMID:20940229
NCBI chr 5:4,803,839...4,808,216
Ensembl chr 5:4,803,839...4,808,035
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Fzd2
frizzled class receptor 2
IAGP
MGI
PMID:20940229
NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884
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Gpsm2
G-protein signalling modulator 2 (AGS3-like, C. elegans)
IAGP
MGI
PMID:26662512
NCBI chr 3:108,585,954...108,629,637
Ensembl chr 3:108,585,954...108,629,625
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Grxcr2
glutaredoxin, cysteine rich 2
IAGP
MGI
PMID:30157177
NCBI chr18:42,118,388...42,132,114
Ensembl chr18:42,118,388...42,132,114
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Lrp6
low density lipoprotein receptor-related protein 6
IAGP
MGI
PMID:24203697
NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
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Mkks
McKusick-Kaufman syndrome
IAGP
MGI
PMID:16170314
NCBI chr 2:136,715,700...136,733,422
Ensembl chr 2:136,715,700...136,733,309
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Mks1
MKS transition zone complex subunit 1
IAGP
MGI
PMID:21045211
NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629
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Myo6
myosin VI
IAGP
MGI
PMID:23485424
NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
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Myo7a
myosin VIIA
IAGP
MGI
PMID:23251483
NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731
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Nr2f1
nuclear receptor subfamily 2, group F, member 1
IAGP
MGI
PMID:16914494
NCBI chr13:78,337,090...78,346,954
Ensembl chr13:78,337,092...78,347,876
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Pcdh15
protocadherin 15
IAGP
MGI
PMID:11124469 PMID:16887306 PMID:21427143
NCBI chr10:72,932,003...74,485,663
Ensembl chr10:72,935,174...74,485,569
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Pou1f1
POU domain, class 1, transcription factor 1
IAGP
MGI
PMID:19176829
NCBI chr16:65,317,398...65,331,904
Ensembl chr16:65,317,397...65,331,183
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Ptk7
PTK7 protein tyrosine kinase 7
IAGP
MGI
PMID:15229603 PMID:20704721
NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430
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Ripor2
RHO family interacting cell polarization regulator 2
IAGP
MGI
PMID:27269051
NCBI chr13:24,685,513...24,917,789
Ensembl chr13:24,685,508...24,917,799
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Scrib
scribbled planar cell polarity
IAGP
MGI
PMID:20215345
NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633
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Sec24b
SEC24 homolog B, COPII coat complex component
IAGP
MGI
PMID:19966784 PMID:20215345
NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
IAGP
MGI
PMID:19379695
NCBI chr 5:144,813,305...144,902,657
Ensembl chr 5:144,813,305...144,902,657
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Smurf2
SMAD specific E3 ubiquitin protein ligase 2
IAGP
MGI
PMID:19379695
NCBI chr11:106,710,887...106,811,544
Ensembl chr11:106,710,892...106,811,541
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Ush1c
USH1 protein network component harmonin
IAGP
MGI
PMID:20211154
NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927
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Usp53
ubiquitin specific peptidase 53
IAGP
MGI
PMID:26609154
NCBI chr 3:122,725,142...122,778,184
Ensembl chr 3:122,725,142...122,778,159
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Vangl1
VANGL planar cell polarity 1
IAGP
MGI
PMID:18296642
NCBI chr 3:102,060,899...102,112,012
Ensembl chr 3:102,060,899...102,112,009
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Vangl2
VANGL planar cell polarity 2
IAGP
MGI
PMID:16116426 PMID:16170314 PMID:18296642 PMID:20940229 PMID:21404367 PMID:22363783 PMID:23986237 PMID:24203697 More...
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
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