Vangl2 (VANGL planar cell polarity 2) - Rat Genome Database

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Gene: Vangl2 (VANGL planar cell polarity 2) Mus musculus
Analyze
Symbol: Vangl2
Name: VANGL planar cell polarity 2
RGD ID: 1319788
MGI Page MGI
Description: Involved in several processes, including Wnt signaling pathway, planar cell polarity pathway; axon guidance; and morphogenesis of an epithelium. Acts upstream of or within several processes, including inner ear development; morphogenesis of an epithelium; and ventricular septum morphogenesis. Located in several cellular components, including basolateral plasma membrane; lateral plasma membrane; and stress fiber. Is active in glutamatergic synapse and postsynaptic density membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system epithelium; and sensory organ. Used to study neural tube defect. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C530001F03Rik; L; lo; loop tail associated protein; loop-tail; loop-tail protein 1; loop-tail-associated protein; Lootl; Lp; Lpp1; Ltap; ska; ska17; ska; stbm; stra; strabismus; van Gogh-like protein 2; vang (van gogh)-like 2; vang-like 2 (van gogh, Drosophila); vang-like protein 2; Vang1l2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,828,527 - 171,856,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,828,527 - 171,856,011 (-)EnsemblGRCm39 Ensembl
GRCm381172,000,960 - 172,027,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,000,960 - 172,028,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv371173,934,502 - 173,957,399 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,841,046 - 173,863,943 (-)NCBIMGSCv36mm8
Celera1174,856,349 - 174,879,265 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (IMP)
apical protein localization  (IMP)
branching involved in blood vessel morphogenesis  (TAS)
cardiac vascular smooth muscle cell differentiation  (TAS)
cell migration involved in kidney development  (IMP)
cochlea development  (IGI)
cochlea morphogenesis  (IGI,IMP)
convergent extension involved in axis elongation  (IMP)
convergent extension involved in neural plate elongation  (IGI,IMP)
convergent extension involved in organogenesis  (IGI)
digestive tract morphogenesis  (IGI)
dopaminergic neuron axon guidance  (IMP)
epicardial cell to mesenchymal cell transition  (TAS)
establishment of body hair planar orientation  (IMP)
establishment of epithelial cell polarity  (TAS)
establishment of planar polarity  (IBA,IGI,IMP)
establishment of planar polarity involved in neural tube closure  (IMP)
establishment or maintenance of epithelial cell apical/basal polarity  (IMP)
glomerulus development  (IMP)
hair follicle development  (IMP)
heart looping  (IMP)
heparan sulfate proteoglycan biosynthetic process  (IMP)
inner ear receptor cell development  (IGI)
inner ear receptor cell stereocilium organization  (IGI,IMP)
kidney morphogenesis  (IMP)
lateral sprouting involved in lung morphogenesis  (IMP)
membranous septum morphogenesis  (IGI)
muscular septum morphogenesis  (IGI)
neural tube closure  (IGI,IMP)
non-canonical Wnt signaling pathway  (IMP)
non-motile cilium assembly  (IGI)
orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis  (IMP)
outflow tract septum morphogenesis  (TAS)
planar dichotomous subdivision of terminal units involved in lung branching morphogenesis  (IMP)
positive regulation of JUN kinase activity  (IGI)
post-anal tail morphogenesis  (IMP)
regulation of actin cytoskeleton organization  (IMP)
regulation of establishment of planar polarity  (IGI)
regulation of synapse pruning  (IDA,IMP)
regulation of Wnt signaling pathway  (IMP)
Rho protein signal transduction  (IMP)
serotonergic neuron axon guidance  (IMP)
somatic stem cell division  (IMP)
somatic stem cell population maintenance  (IMP)
Wnt signaling pathway, planar cell polarity pathway  (IBA,IGI,IMP)
wound healing  (IGI)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
aberrant origin of the right subclavian artery  (IAGP)
abnormal abdominal wall morphology  (IAGP)
abnormal anus morphology  (IAGP)
abnormal aortic arch morphology  (IAGP)
abnormal astrocyte morphology  (IAGP)
abnormal auditory brainstem response  (IAGP)
abnormal body wall morphology  (IAGP)
abnormal brain development  (IAGP)
abnormal brain morphology  (IEA)
abnormal brain ventricle morphology  (IAGP)
abnormal brain ventricular system morphology  (IAGP)
abnormal branching involved in lung morphogenesis  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cerebral hemisphere morphology  (IAGP)
abnormal cervical flexure morphology  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal cochlear hair cell number  (IAGP)
abnormal cochlear hair cell stereociliary bundle morphology  (IAGP)
abnormal cochlear inner hair cell morphology  (IAGP)
abnormal cochlear outer hair cell morphology  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal costovertebral joint morphology  (IAGP)
abnormal craniofacial morphology  (IEA)
abnormal Deiters cell morphology  (IAGP)
abnormal developmental patterning  (IAGP)
abnormal digestive system development  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal direction of heart looping  (IAGP)
abnormal distortion product otoacoustic emission  (IAGP)
abnormal dorsal striatum morphology  (IAGP)
abnormal ear development  (IEA)
abnormal embryo development  (IAGP)
abnormal embryo turning  (IAGP)
abnormal embryonic cilium location or orientation  (IAGP)
abnormal embryonic epiblast morphology  (IAGP)
abnormal embryonic neuroepithelium morphology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal external female genitalia morphology  (IAGP)
abnormal external male genitalia morphology  (IAGP)
abnormal eyelid morphology  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IEA)
abnormal head movements  (IAGP)
abnormal head shape  (IEA)
abnormal heart development  (IAGP)
abnormal heart looping  (IAGP)
abnormal heart morphology  (IAGP)
abnormal hindbrain morphology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal left subclavian artery morphology  (IAGP)
abnormal left-right axis patterning  (IAGP)
abnormal limb development  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal lung epithelium morphology  (IAGP)
abnormal lung lobe morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung saccule morphology  (IAGP)
abnormal metencephalon morphology  (IAGP)
abnormal midbrain development  (IAGP)
abnormal midbrain morphology  (IAGP)
abnormal motile primary cilium physiology  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal neural plate morphology  (IAGP)
abnormal neural tube closure  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal organ of Corti morphology  (IAGP)
abnormal orientation of cochlear hair cell stereociliary bundles  (IAGP)
abnormal orientation of inner hair cell stereociliary bundles  (IAGP)
abnormal orientation of outer hair cell stereociliary bundles  (IAGP)
abnormal otic pit morphology  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal outer hair cell stereociliary bundle morphology  (IAGP)
abnormal pillar cell morphology  (IAGP)
abnormal placenta morphology  (IEA)
abnormal prenatal body size  (IAGP)
abnormal primitive node morphology  (IAGP)
abnormal primitive streak morphology  (IAGP)
abnormal reproductive system development  (IAGP)
abnormal respiratory conducting tube morphology  (IAGP)
abnormal retina morphology  (IEA)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal rostral-caudal body axis extension  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal somite shape  (IAGP)
abnormal somite size  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal tail morphology  (IAGP)
abnormal tail movements  (IAGP)
abnormal urinary bladder morphology  (IAGP)
abnormal urinary system development  (IAGP)
abnormal ventral body wall morphology  (IEA)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral arch development  (IAGP)
abnormal vertebral arch morphology  (IAGP)
abnormal vertebral body morphology  (IAGP)
abnormal vertebral epiphyseal plate morphology  (IAGP)
abnormal vestibular hair cell morphology  (IAGP)
abnormal xiphoid process morphology  (IAGP)
caudal body truncation  (IAGP)
cleft palate  (IAGP)
common truncal valve  (IAGP)
craniorachischisis  (IAGP)
curly tail  (IAGP)
decreased circulating phosphate level  (IEA)
decreased cochlea coiling  (IAGP)
decreased cochlear outer hair cell number  (IAGP)
decreased embryo size  (IAGP)
decreased fetal size  (IAGP)
decreased fetal weight  (IAGP)
decreased palatal shelf size  (IAGP)
decreased rib number  (IAGP)
decreased vertical activity  (IAGP)
delayed neural tube closure  (IAGP)
dilated endolymphatic sac  (IAGP)
dilated terminal bronchiole tube  (IAGP)
double aortic arch  (IAGP)
double outlet right ventricle  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IEA)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
enlarged floor plate  (IAGP)
enlarged lateral ventricles  (IAGP)
enlarged third ventricle  (IAGP)
exencephaly  (IAGP)
eyelids open at birth  (IAGP)
failure of eyelid fusion  (IAGP)
failure of heart looping  (IAGP)
female infertility  (IAGP)
fetal growth retardation  (IAGP)
fused somites  (IAGP)
fusion of vertebral arches  (IAGP)
head shaking  (IAGP)
hemorrhage  (IAGP)
heterotaxia  (IAGP)
impaired balance  (IAGP)
impaired branching involved in terminal bronchiole morphogenesis  (IAGP)
imperforate hymen  (IAGP)
incomplete embryo turning  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased cochlear hair cell number  (IAGP)
increased cochlear outer hair cell number  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
inner ear hypoplasia  (IAGP)
kidney cyst  (IAGP)
kinked tail  (IAGP)
left pulmonary isomerism  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lethality, complete penetrance  (IAGP)
long tail  (IAGP)
male infertility  (IAGP)
meningomyelocele  (IAGP)
microphthalmia  (IEA)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IEA)
no abnormal phenotype detected  (IAGP)
omphalocele  (IAGP)
open neural tube  (IAGP)
perinatal lethality, complete penetrance  (IEA)
perinatal lethality, incomplete penetrance  (IAGP)
persistence of hyaloid vascular system  (IEA)
postnatal lethality, incomplete penetrance  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
preweaning lethality, incomplete penetrance  (IEA)
pulmonary hypoplasia  (IAGP)
retroesophageal right subclavian artery  (IAGP)
rib bifurcation  (IAGP)
rib fusion  (IAGP)
right aortic arch  (IAGP)
short rostral-caudal axis  (IAGP)
short scala media  (IAGP)
short snout  (IAGP)
short tail  (IAGP)
short umbilical cord  (IAGP)
small lung  (IAGP)
small lung lobe  (IAGP)
spina bifida  (IAGP)
thick lung-associated mesenchyme  (IAGP)
vagina atresia  (IAGP)
vascular ring  (IAGP)
ventricular septal defect  (IAGP)
vertebral fusion  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Eddleston J, etal., Genomics 1999 Mar 1;56(2):149-59.
2. Planar cell polarity signaling in vertebrates. Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
3. Structure and expression of Strabismus 1 gene on human chromosome 1q21-q23. Katoh M Int J Oncol. 2002 Jun;20(6):1197-203.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:454356   PMID:540002   PMID:923728   PMID:1138408   PMID:1598821   PMID:2858942   PMID:3977771   PMID:4230658   PMID:4477997   PMID:5651230   PMID:5912439   PMID:5955164  
PMID:6249881   PMID:6650116   PMID:6693832   PMID:6991554   PMID:7607670   PMID:7607671   PMID:8088438   PMID:8200433   PMID:8563167   PMID:8719347   PMID:8722511   PMID:8889548  
PMID:9352104   PMID:9463361   PMID:9545534   PMID:9933565   PMID:10079519   PMID:10349636   PMID:10525207   PMID:10547923   PMID:11042159   PMID:11076861   PMID:11401431   PMID:11401449  
PMID:11431695   PMID:11440971   PMID:11707073   PMID:11709546   PMID:12477932   PMID:12499390   PMID:12724779   PMID:13435227   PMID:14039372   PMID:14512015   PMID:14610273   PMID:15195140  
PMID:15229603   PMID:15456783   PMID:15489334   PMID:15637299   PMID:15830372   PMID:16116426   PMID:16141072   PMID:16141073   PMID:16170314   PMID:16190875   PMID:16487141   PMID:16495441  
PMID:16571627   PMID:16687519   PMID:16962386   PMID:17119020   PMID:17174942   PMID:17229766   PMID:17376975   PMID:17433286   PMID:17556662   PMID:17566405   PMID:17767158   PMID:17967808  
PMID:18066062   PMID:18174466   PMID:18257070   PMID:18287559   PMID:18296642   PMID:18339676   PMID:18604206   PMID:18606138   PMID:18654668   PMID:18701545   PMID:18799693   PMID:18849982  
PMID:19008950   PMID:19012162   PMID:19100252   PMID:19100728   PMID:19210786   PMID:19285468   PMID:19300477   PMID:19332887   PMID:19363157   PMID:19497282   PMID:19701191   PMID:19706528  
PMID:19762422   PMID:19966784   PMID:20016102   PMID:20067994   PMID:20126399   PMID:20215345   PMID:20223754   PMID:20299672   PMID:20329788   PMID:20473291   PMID:20534871   PMID:20562861  
PMID:20630950   PMID:20643356   PMID:20653034   PMID:20704721   PMID:20843830   PMID:20940229   PMID:20962035   PMID:21035938   PMID:21062866   PMID:21106844   PMID:21246654   PMID:21262816  
PMID:21267068   PMID:21316585   PMID:21316586   PMID:21325504   PMID:21404367   PMID:21515572   PMID:21677750   PMID:21718540   PMID:21743464   PMID:21761479   PMID:21764747   PMID:21873635  
PMID:22084027   PMID:22318628   PMID:22333836   PMID:22363567   PMID:22363783   PMID:22510986   PMID:22771245   PMID:22773843   PMID:22841628   PMID:22991442   PMID:23029439   PMID:23095888  
PMID:23122850   PMID:23144463   PMID:23177622   PMID:23195221   PMID:23359061   PMID:23406901   PMID:23567299   PMID:23696638   PMID:23760952   PMID:23824190   PMID:23913870   PMID:23934215  
PMID:23974041   PMID:23986237   PMID:23996638   PMID:24135232   PMID:24203697   PMID:24284205   PMID:24302887   PMID:24412369   PMID:24689077   PMID:24703875   PMID:24706806   PMID:24852369  
PMID:24998526   PMID:25002511   PMID:25024228   PMID:25038043   PMID:25108913   PMID:25128525   PMID:25139745   PMID:25145929   PMID:25190059   PMID:25218921   PMID:25333478   PMID:25373475  
PMID:25406397   PMID:25445275   PMID:25521757   PMID:25540130   PMID:25596276   PMID:25605782   PMID:25761772   PMID:25813538   PMID:25917818   PMID:25990804   PMID:26035863   PMID:26116661  
PMID:26116666   PMID:26209645   PMID:26245976   PMID:26517967   PMID:26662512   PMID:26685160   PMID:26883626   PMID:26989192   PMID:27155041   PMID:27582005   PMID:27590885   PMID:27597235  
PMID:27612405   PMID:27789626   PMID:28057866   PMID:28115485   PMID:28159525   PMID:28237967   PMID:28266911   PMID:28292423   PMID:28334810   PMID:28346477   PMID:28348167   PMID:28369449  
PMID:28481871   PMID:28599846   PMID:28729440   PMID:28833131   PMID:28859094   PMID:28978771   PMID:29056748   PMID:29063958   PMID:29111415   PMID:29180573   PMID:29229865   PMID:29426931  
PMID:29463853   PMID:29510119   PMID:29590636   PMID:29615464   PMID:29636380   PMID:29784671   PMID:29956664   PMID:30125361   PMID:30189017   PMID:30283008   PMID:30814219   PMID:30814664  
PMID:30940800   PMID:30952667   PMID:31068622   PMID:31226309   PMID:31257105   PMID:31268833   PMID:31321879   PMID:31462532   PMID:31909712   PMID:31974352   PMID:32125730   PMID:32155439  
PMID:32203543   PMID:32353019   PMID:32394892   PMID:32452625   PMID:32460029   PMID:32511952   PMID:32521268   PMID:32805026   PMID:32866472   PMID:32907846   PMID:33051257   PMID:33141892  
PMID:33195213   PMID:33500317   PMID:33529151   PMID:33588909   PMID:33608529   PMID:33824332   PMID:33941697   PMID:34001891   PMID:34029538   PMID:34032267   PMID:34214490   PMID:34274973  
PMID:34321999   PMID:34407949   PMID:34463728   PMID:34521753   PMID:34842271   PMID:34988124   PMID:35399538   PMID:35440748   PMID:35514236   PMID:35580169   PMID:35649377   PMID:35714603  
PMID:36026468   PMID:36123354   PMID:36252648   PMID:36305473   PMID:36417873   PMID:36604605   PMID:36712970   PMID:36890135   PMID:37155852   PMID:37225424   PMID:37228654   PMID:37352355  
PMID:37390294   PMID:37589075   PMID:38187761   PMID:38355793   PMID:38460794   PMID:38569553   PMID:38814743   PMID:38822427   PMID:39028807   PMID:39225402   PMID:39269442   PMID:39366759  


Genomics

Comparative Map Data
Vangl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,828,527 - 171,856,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,828,527 - 171,856,011 (-)EnsemblGRCm39 Ensembl
GRCm381172,000,960 - 172,027,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,000,960 - 172,028,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv371173,934,502 - 173,957,399 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,841,046 - 173,863,943 (-)NCBIMGSCv36mm8
Celera1174,856,349 - 174,879,265 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
VANGL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,400,564 - 160,428,670 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,400,564 - 160,428,678 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,370,354 - 160,398,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,636,988 - 158,665,088 (+)NCBINCBI36Build 36hg18NCBI36
Build 341157,198,538 - 157,211,533NCBI
Celera1133,439,094 - 133,467,201 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,726,520 - 131,754,628 (+)NCBIHuRef
CHM1_11161,765,749 - 161,793,853 (+)NCBICHM1_1
T2T-CHM13v2.01159,537,640 - 159,565,747 (+)NCBIT2T-CHM13v2.0
Vangl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,995,124 - 87,021,770 (-)NCBIGRCr8
mRatBN7.21384,462,731 - 84,489,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,465,527 - 84,489,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,968,878 - 86,992,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,369,149 - 88,393,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,553,752 - 85,577,558 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,379,203 - 90,405,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,380,632 - 90,405,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,902,313 - 94,928,719 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,964,426 - 87,988,364 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,152,106 - 88,178,412 (-)NCBI
Celera1384,077,622 - 84,101,482 (-)NCBICelera
Cytogenetic Map13q24NCBI
Vangl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,161,843 - 12,189,547 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,162,084 - 12,189,322 (+)NCBIChiLan1.0ChiLan1.0
VANGL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,423,065 - 89,451,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,163,031 - 89,190,979 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,754,897 - 135,783,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,676,595 - 139,704,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,683,745 - 139,704,281 (+)Ensemblpanpan1.1panPan2
VANGL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,822,873 - 21,824,537 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,892,456 - 21,915,854 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,934,985 - 21,958,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,928,893 - 21,958,752 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,823,051 - 21,846,540 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,235,964 - 22,259,526 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,645,964 - 22,669,547 (-)NCBIUU_Cfam_GSD_1.0
Vangl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,512,192 - 6,526,199 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740228,317 - 242,601 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740228,377 - 242,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VANGL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,051,277 - 90,080,635 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,051,994 - 90,080,701 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,945,552 - 97,971,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VANGL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,521,066 - 3,549,301 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,521,060 - 3,548,718 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,578,515 - 2,606,736 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vangl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794841,247 - 867,708 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624794841,302 - 867,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3082
Count of miRNA genes:808
Interacting mature miRNAs:1034
Transcripts:ENSMUST00000027837, ENSMUST00000111263, ENSMUST00000111264, ENSMUST00000138714, ENSMUST00000148363, ENSMUST00000153662
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169038741174456436Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4142417Emrq1_memotional reactivity QTL 1 (mouse)Not determined171632048172716369Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
38456000Lick2_mlick rate 2, sucralose (mouse)1170397438173397435Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
38456001Lick1_mlick rate 1, water (mouse)1170397438173397435Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1302201Alcw1_malcohol withdrawal 1 (mouse)Not determined1170868354171966357Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
13207587Mwmlpt1_mMorris water maze latency to platform, training, 1 (mouse)1169597438173397435Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
13207591Mwmlpa1_mMorris water maze latency to platform, all, 1 (mouse)1169797438173297435Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse

Markers in Region
G42042  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,024,067 - 172,024,238UniSTSGRCm38
MGSCv371173,954,198 - 173,954,369UniSTSGRCm37
Celera1174,876,046 - 174,876,217UniSTS
Cytogenetic Map1H3UniSTS
cM Map193.4UniSTS
Vangl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map179.54UniSTS
Vangl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF365875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW046551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY035370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC075636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY320814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027837   ⟹   ENSMUSP00000027837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,828,527 - 171,854,862 (-)Ensembl
GRCm38.p6 Ensembl1172,000,960 - 172,027,295 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111263   ⟹   ENSMUSP00000106894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,828,527 - 171,856,011 (-)Ensembl
GRCm38.p6 Ensembl1172,000,960 - 172,028,444 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111264   ⟹   ENSMUSP00000106895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,831,996 - 171,854,862 (-)Ensembl
GRCm38.p6 Ensembl1172,004,429 - 172,027,295 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138714   ⟹   ENSMUSP00000117736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,837,500 - 171,854,835 (-)Ensembl
GRCm38.p6 Ensembl1172,009,933 - 172,027,268 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,832,330 - 171,836,596 (-)Ensembl
GRCm38.p6 Ensembl1172,004,763 - 172,009,029 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153662   ⟹   ENSMUSP00000116522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,837,417 - 171,854,278 (-)Ensembl
GRCm38.p6 Ensembl1172,009,850 - 172,026,711 (-)Ensembl
Ensembl Acc Id: ENSMUST00000247845   ⟹   ENSMUSP00000159531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,828,527 - 171,854,862 (-)Ensembl
RefSeq Acc Id: NM_033509   ⟹   NP_277044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,862 (-)NCBI
GRCm381172,000,960 - 172,027,295 (-)NCBI
MGSCv371173,934,502 - 173,957,399 (-)RGD
Celera1174,856,349 - 174,879,265 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497051   ⟹   XP_006497114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,881 (-)NCBI
GRCm381172,000,960 - 172,027,318 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497052   ⟹   XP_006497115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,352 (-)NCBI
GRCm381172,000,960 - 172,026,772 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497053   ⟹   XP_006497116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,377 (-)NCBI
GRCm381172,000,960 - 172,026,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497054   ⟹   XP_006497117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,843,210 (-)NCBI
GRCm381172,000,960 - 172,015,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313008   ⟹   XP_017168497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,842,378 (-)NCBI
GRCm381172,000,960 - 172,014,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154494   ⟹   XP_036010387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,850,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154495   ⟹   XP_036010388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,856,532 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947338
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,882 (-)NCBI
GRCm381172,000,960 - 172,027,318 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935287
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,828,527 - 171,854,882 (-)NCBI
Sequence:
RefSeq Acc Id: NP_277044   ⟸   NM_033509
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497114   ⟸   XM_006497051
- Peptide Label: isoform X1
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497115   ⟸   XM_006497052
- Peptide Label: isoform X1
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497116   ⟸   XM_006497053
- Peptide Label: isoform X1
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497117   ⟸   XM_006497054
- Peptide Label: isoform X1
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168497   ⟸   XM_017313008
- Peptide Label: isoform X1
- UniProtKB: Q923Z8 (UniProtKB/Swiss-Prot),   Q91ZD4 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000106895   ⟸   ENSMUST00000111264
Ensembl Acc Id: ENSMUSP00000106894   ⟸   ENSMUST00000111263
Ensembl Acc Id: ENSMUSP00000027837   ⟸   ENSMUST00000027837
Ensembl Acc Id: ENSMUSP00000117736   ⟸   ENSMUST00000138714
Ensembl Acc Id: ENSMUSP00000116522   ⟸   ENSMUST00000153662
RefSeq Acc Id: XP_036010388   ⟸   XM_036154495
- Peptide Label: isoform X1
- UniProtKB: Q91ZD4 (UniProtKB/Swiss-Prot),   Q923Z8 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036010387   ⟸   XM_036154494
- Peptide Label: isoform X1
- UniProtKB: Q91ZD4 (UniProtKB/Swiss-Prot),   Q923Z8 (UniProtKB/Swiss-Prot),   D3YY75 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000159531   ⟸   ENSMUST00000247845

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZD4-F1-model_v2 AlphaFold Q91ZD4 1-521 view protein structure

Promoters
RGD ID:6875728
Promoter ID:EPDNEW_M1315
Type:initiation region
Name:Vangl2_1
Description:Mus musculus VANGL planar cell polarity 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,027,286 - 172,027,346EPDNEW
RGD ID:6818704
Promoter ID:MM_KWN:2885
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   MEF_B4
Transcripts:ENSMUST00000111263,   ENSMUST00000111264,   OTTMUST00000051233,   OTTMUST00000078154,   UC007DPI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361173,957,306 - 173,957,806 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2135272 AgrOrtholog
Ensembl Genes ENSMUSG00000026556 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027837 ENTREZGENE
  ENSMUST00000027837.13 UniProtKB/Swiss-Prot
  ENSMUST00000111263.9 UniProtKB/Swiss-Prot
  ENSMUST00000111264.8 UniProtKB/TrEMBL
  ENSMUST00000138714.2 UniProtKB/TrEMBL
  ENSMUST00000153662.8 UniProtKB/TrEMBL
  ENSMUST00000247845.1 UniProtKB/TrEMBL
InterPro VANGL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:93840 UniProtKB/Swiss-Prot
MGD MGI:2135272 ENTREZGENE
NCBI Gene 93840 ENTREZGENE
PANTHER PTHR20886 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VANG-LIKE PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Strabismus UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vangl2 PhenoGen
PIRSF Strabismus UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A991ELD2_MOUSE UniProtKB/TrEMBL
  D3YY75 ENTREZGENE, UniProtKB/TrEMBL
  D3Z374_MOUSE UniProtKB/TrEMBL
  D3Z4X2_MOUSE UniProtKB/TrEMBL
  Q6ZPV8_MOUSE UniProtKB/TrEMBL
  Q91ZD4 ENTREZGENE
  Q923Z8 ENTREZGENE
  VANG2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q923Z8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Vangl2  VANGL planar cell polarity 2    vang-like 2 (van gogh, Drosophila)  Symbol and/or name change 5135510 APPROVED