Cobl (cordon-bleu WH2 repeat) - Rat Genome Database

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Gene: Cobl (cordon-bleu WH2 repeat) Mus musculus
Analyze
Symbol: Cobl
Name: cordon-bleu WH2 repeat
RGD ID: 1323756
MGI Page MGI
Description: Enables actin monomer binding activity. Involved in several processes, including actin filament organization; embryonic pattern specification; and positive regulation of cell projection organization. Acts upstream of or within actin cytoskeleton organization and neural tube closure. Located in several cellular components, including growth cone; ruffle; and terminal web. Colocalizes with actin filament. Is expressed in several structures, including central nervous system; chordamesoderm; embryo mesenchyme; gut; and nose. Orthologous to human COBL (cordon-bleu WH2 repeat protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732460E13; C530045F18Rik; cordon-bleu protein; mKIAA0633; protein cordon-bleu
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391112,186,676 - 12,415,022 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1112,186,608 - 12,414,960 (-)EnsemblGRCm39 Ensembl
GRCm381112,236,676 - 12,465,022 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1112,236,608 - 12,464,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv371112,136,679 - 12,364,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361112,136,681 - 12,364,803 (-)NCBIMGSCv36mm8
Celera1112,678,618 - 12,909,422 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map117.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CoblMousepleomorphic xanthoastrocytoma  ISORGD:13237558554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CoblMouse(+)-schisandrin B multiple interactionsISORGD:13120026480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of COBL mRNA]CTDPMID:31150632
CoblMouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of COBL mRNACTDPMID:36331819
CoblMouse1,2-dimethylhydrazine decreases expressionEXP 64804641,2-Dimethylhydrazine results in decreased expression of COBL mRNACTDPMID:22206623
CoblMouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of COBL mRNACTDPMID:22206623
CoblMouse17beta-estradiol increases expressionISORGD:13237556480464Estradiol results in increased expression of COBL mRNACTDPMID:23019147
CoblMouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of COBL mRNACTDPMID:39298647
CoblMouse17beta-estradiol multiple interactionsISORGD:13237556480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of COBL mRNACTDPMID:30165855
CoblMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of COBL mRNACTDPMID:19933214
CoblMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13120026480464Tetrachlorodibenzodioxin affects the expression of COBL mRNACTDPMID:34747641
CoblMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13120026480464Tetrachlorodibenzodioxin results in decreased expression of COBL mRNACTDPMID:21215274|PMID:33387578
CoblMouse2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionEXP 64804642,2',4,4',5-brominated diphenyl ether affects the expression of COBL mRNACTDPMID:38648751
CoblMouse3-chloropropane-1,2-diol increases expressionISORGD:13120026480464alpha-Chlorohydrin results in increased expression of COBL mRNACTDPMID:28522335
CoblMouse4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of COBL mRNACTDPMID:30951980|PMID:39298647
CoblMouse4,4'-sulfonyldiphenol decreases methylationISORGD:13237556480464bisphenol S results in decreased methylation of COBL geneCTDPMID:31601247
CoblMouse4-hydroxyphenyl retinamide increases expressionEXP 6480464Fenretinide results in increased expression of COBL mRNACTDPMID:28973697
CoblMouse4-hydroxyphenyl retinamide decreases expressionEXP 6480464Fenretinide results in decreased expression of COBL mRNACTDPMID:28973697
CoblMouseaflatoxin B1 affects expressionISORGD:13237556480464Aflatoxin B1 affects the expression of COBL proteinCTDPMID:20106945
CoblMouseaflatoxin B1 decreases methylationISORGD:13237556480464Aflatoxin B1 results in decreased methylation of COBL intronCTDPMID:30157460
CoblMouseaflatoxin B1 decreases expressionISORGD:13237556480464Aflatoxin B1 results in decreased expression of COBL mRNACTDPMID:21641981
CoblMouseaflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of COBL mRNACTDPMID:19770486

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Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CoblMouseactin crosslink formation involved_inNAS 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseactin cytoskeleton organization acts_upstream_of_or_withinIMP 2290270 PMID:29891944MGIPMID:29891944
CoblMouseactin filament network formation involved_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseactin filament network formation involved_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseactin filament polymerization involved_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseactin filament polymerization involved_inIMP 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousecollateral sprouting in absence of injury involved_inIMP 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousedigestive tract development involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
CoblMouseembryonic axis specification involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
CoblMousefloor plate development involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
CoblMouseliver development involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
CoblMouseneural tube closure acts_upstream_of_or_withinIGIMGI:21352722290270 PMID:14512015MGIPMID:14512015
CoblMousenotochord development involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
CoblMousepositive regulation of dendrite development involved_inIDA 2290270 PMID:21725280BHF-UCLPMID:21725280
CoblMousepositive regulation of ruffle assembly involved_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousesomite specification involved_inIEP 2290270 PMID:7586755BHF-UCLPMID:7586755
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CoblMouseactin filament located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseactin filament located_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseaxon located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseaxonal growth cone is_active_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseaxonal growth cone located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousecell cortex located_inISORGD:13120022290270 GO_CentralGO_REF:0000096
CoblMousecell cortex located_inIDA 2290270 PMID:21725280BHF-UCLPMID:21725280
CoblMousedendrite located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousedendritic growth cone located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMousedendritic growth cone is_active_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMousemembrane located_inIDA 2290270 PMID:21725280BHF-UCLPMID:21725280
CoblMouseneuronal cell body is_active_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseneuronal cell body located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseperinuclear region of cytoplasm located_inIDA 2290270 PMID:21725280BHF-UCLPMID:21725280
CoblMouseperinuclear region of cytoplasm is_active_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseplasma membrane located_inISORGD:13120022290270 GO_CentralGO_REF:0000096
CoblMouseplasma membrane located_inIEAUniProtKB-SubCell:SL-00392290270 UniProtGO_REF:0000044
CoblMouseplasma membrane is_active_inIBAPANTHER:PTN002931323|RGD:13120022290270 GO_CentralGO_REF:0000033
CoblMouseruffle located_inIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseruffle is_active_inIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
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Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CoblMouseactin monomer binding enablesIEAInterPro:IPR0398952290270 InterProGO_REF:0000002
CoblMouseactin monomer binding enablesIBAPANTHER:PTN002931323|MGI:1050562290270 GO_CentralGO_REF:0000033
CoblMouseactin monomer binding enablesIDA 2290270 PMID:17956734BHF-UCLPMID:17956734
CoblMouseprotein binding enablesIPIUniProtKB:Q9Z0W52290270 PMID:17956734, PMID:21725280, PMID:26334624IntActPMID:17956734|PMID:21725280|PMID:26334624
CoblMouseprotein binding enablesIPIUniProtKB:Q5I2Z0|UniProtKB:Q9QY17|UniProtKB:Q9Z0W52290270 PMID:21725280IntActPMID:21725280

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#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
PMID:7586755   PMID:8889548   PMID:10349636   PMID:10395797   PMID:11042159   PMID:11076861   PMID:11210191   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14512015  
PMID:14610273   PMID:15231714   PMID:15345747   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17229766   PMID:17956734   PMID:17967808   PMID:18799693   PMID:19174477   PMID:21267068  
PMID:21677750   PMID:21725280   PMID:21873635   PMID:22114352   PMID:23223303   PMID:25031432   PMID:26334624   PMID:27464680   PMID:28973166   PMID:29689199   PMID:29891944   PMID:30157434  
PMID:32560809   PMID:32636403   PMID:33230847   PMID:33500348   PMID:34264190   PMID:34898601   PMID:35874829   PMID:36108632  



Cobl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391112,186,676 - 12,415,022 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1112,186,608 - 12,414,960 (-)EnsemblGRCm39 Ensembl
GRCm381112,236,676 - 12,465,022 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1112,236,608 - 12,464,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv371112,136,679 - 12,364,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361112,136,681 - 12,364,803 (-)NCBIMGSCv36mm8
Celera1112,678,618 - 12,909,422 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map117.3NCBI
COBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38751,016,212 - 51,316,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl751,016,212 - 51,316,818 (-)EnsemblGRCh38hg38GRCh38
GRCh37751,083,909 - 51,384,506 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36751,051,404 - 51,351,990 (-)NCBINCBI36Build 36hg18NCBI36
Build 34750,858,118 - 51,158,705NCBI
Celera751,148,737 - 51,449,348 (-)NCBICelera
Cytogenetic Map7p12.1NCBI
HuRef750,933,696 - 51,137,285 (-)NCBIHuRef
CHM1_1751,086,207 - 51,386,564 (-)NCBICHM1_1
T2T-CHM13v2.0751,177,453 - 51,478,069 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2751,089,893 - 51,390,521 (-)NCBI
Cobl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81491,041,721 - 91,274,272 (-)NCBIGRCr8
mRatBN7.21486,828,137 - 87,060,682 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1486,828,139 - 87,060,800 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1491,237,296 - 91,483,692 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01492,481,631 - 92,728,031 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01488,949,260 - 89,195,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01492,341,949 - 92,497,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1492,342,957 - 92,577,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01492,142,186 - 92,321,314 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41493,154,637 - 93,309,406 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11492,994,412 - 93,340,571 (-)NCBI
Celera1485,826,388 - 85,975,943 (-)NCBICelera
Cytogenetic Map14q21NCBI
COBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2655,888,527 - 56,188,488 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17104,213,250 - 104,513,211 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0751,652,318 - 51,952,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1751,894,468 - 52,114,849 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl751,895,807 - 52,097,841 (-)Ensemblpanpan1.1panPan2
COBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1182,206,957 - 2,386,333 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl182,208,260 - 2,459,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha182,249,781 - 2,393,765 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0182,317,922 - 2,462,079 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl182,264,613 - 2,514,854 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1182,289,962 - 2,433,564 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0182,286,890 - 2,430,828 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0182,423,375 - 2,567,362 (-)NCBIUU_Cfam_GSD_1.0
Cobl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118105,650,726 - 105,902,001 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936686621,502 - 872,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19136,850,521 - 137,055,249 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29150,659,325 - 150,667,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,501,647 - 7,803,175 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,598,126 - 7,803,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606214,578,093 - 14,882,079 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cobl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247403,332,977 - 3,399,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cobl
7344 total Variants

Predicted Target Of
Summary Value
Count of predictions:5622
Count of miRNA genes:891
Interacting mature miRNAs:1187
Transcripts:ENSMUST00000046755, ENSMUST00000109650, ENSMUST00000109651, ENSMUST00000130572, ENSMUST00000136549, ENSMUST00000146067, ENSMUST00000172827, ENSMUST00000172919, ENSMUST00000172956, ENSMUST00000174874
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse

1 to 10 of 45 rows
D11Mit2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381112,318,637 - 12,318,743UniSTSGRCm38
MGSCv371112,218,640 - 12,218,746UniSTSGRCm37
Celera1112,763,346 - 12,763,444UniSTS
Cytogenetic Map11A1UniSTS
cM Map112.4UniSTS
Whitehead Genetic114.4UniSTS
Whitehead_YAC11 UniSTS






1 to 30 of 37 rows
RefSeq Transcripts NM_001282993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI844390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY308745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 37 rows

Ensembl Acc Id: ENSMUST00000046755   ⟹   ENSMUSP00000045693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,186,676 - 12,414,957 (-)Ensembl
GRCm38.p6 Ensembl1112,236,676 - 12,464,957 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109650   ⟹   ENSMUSP00000105277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,186,676 - 12,414,859 (-)Ensembl
GRCm38.p6 Ensembl1112,236,676 - 12,464,859 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109651   ⟹   ENSMUSP00000105278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,186,678 - 12,414,960 (-)Ensembl
GRCm38.p6 Ensembl1112,236,678 - 12,464,960 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,254,867 - 12,414,752 (-)Ensembl
GRCm38.p6 Ensembl1112,304,867 - 12,464,752 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136549   ⟹   ENSMUSP00000114779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,246,363 - 12,319,640 (-)Ensembl
GRCm38.p6 Ensembl1112,296,363 - 12,369,640 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146067   ⟹   ENSMUSP00000119008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,293,847 - 12,328,278 (-)Ensembl
GRCm38.p6 Ensembl1112,343,847 - 12,378,278 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172827   ⟹   ENSMUSP00000133368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,217,007 - 12,319,692 (-)Ensembl
GRCm38.p6 Ensembl1112,267,007 - 12,369,692 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172919   ⟹   ENSMUSP00000133669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,186,608 - 12,414,804 (-)Ensembl
GRCm38.p6 Ensembl1112,236,608 - 12,464,804 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172956   ⟹   ENSMUSP00000134372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,187,111 - 12,414,800 (-)Ensembl
GRCm38.p6 Ensembl1112,237,111 - 12,464,800 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174874   ⟹   ENSMUSP00000133470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,186,678 - 12,362,144 (-)Ensembl
GRCm38.p6 Ensembl1112,236,678 - 12,412,144 (-)Ensembl
RefSeq Acc Id: NM_001282993   ⟹   NP_001269922
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,414,939 (-)NCBI
GRCm381112,236,676 - 12,464,960 (-)NCBI
Celera1112,678,618 - 12,909,422 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282994   ⟹   NP_001269923
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,362,147 (-)NCBI
GRCm381112,236,676 - 12,412,140 (-)NCBI
Celera1112,678,618 - 12,909,422 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001401095   ⟹   NP_001388024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,414,939 (-)NCBI
RefSeq Acc Id: NM_001401096   ⟹   NP_001388025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,414,939 (-)NCBI
RefSeq Acc Id: NM_001401097   ⟹   NP_001388026
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,414,939 (-)NCBI
RefSeq Acc Id: NM_001401098   ⟹   NP_001388027
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,246,361 - 12,414,939 (-)NCBI
RefSeq Acc Id: NM_001401099   ⟹   NP_001388028
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,246,361 - 12,414,939 (-)NCBI
RefSeq Acc Id: NM_001401100   ⟹   NP_001388029
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,246,361 - 12,414,661 (-)NCBI
RefSeq Acc Id: NM_172496   ⟹   NP_766084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,414,939 (-)NCBI
GRCm381112,236,676 - 12,464,960 (-)NCBI
MGSCv371112,136,679 - 12,364,963 (-)RGD
Celera1112,678,618 - 12,909,422 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514481   ⟹   XP_006514544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,007 (-)NCBI
GRCm381112,236,676 - 12,464,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243651   ⟹   XP_011241953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,007 (-)NCBI
GRCm381112,236,676 - 12,464,995 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243652   ⟹   XP_011241954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,381,060 (-)NCBI
GRCm381112,236,676 - 12,431,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243653   ⟹   XP_011241955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,007 (-)NCBI
GRCm381112,236,676 - 12,464,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243654   ⟹   XP_011241956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,007 (-)NCBI
GRCm381112,236,676 - 12,464,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243656   ⟹   XP_011241958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,007 (-)NCBI
GRCm381112,236,676 - 12,464,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245514   ⟹   XP_030101374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,186,676 - 12,415,022 (-)NCBI
GRCm381112,236,676 - 12,465,022 (-)NCBI
Sequence:
1 to 30 of 38 rows
Protein RefSeqs NP_001269922 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269923 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388025 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388026 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388027 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388028 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388029 (Get FASTA)   NCBI Sequence Viewer  
  NP_766084 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514544 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241953 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241954 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241955 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241956 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241958 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101374 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA92362 (Get FASTA)   NCBI Sequence Viewer  
  AAH23264 (Get FASTA)   NCBI Sequence Viewer  
  AAH60061 (Get FASTA)   NCBI Sequence Viewer  
  AAI45119 (Get FASTA)   NCBI Sequence Viewer  
  AAI50707 (Get FASTA)   NCBI Sequence Viewer  
  AAP74341 (Get FASTA)   NCBI Sequence Viewer  
  BAC26144 (Get FASTA)   NCBI Sequence Viewer  
  BAC33896 (Get FASTA)   NCBI Sequence Viewer  
  BAC65616 (Get FASTA)   NCBI Sequence Viewer  
  EDL40651 (Get FASTA)   NCBI Sequence Viewer  
  EDL40652 (Get FASTA)   NCBI Sequence Viewer  
  EDL40653 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000045693
  ENSMUSP00000045693.8
1 to 30 of 38 rows
1 to 5 of 25 rows
1 to 5 of 25 rows
RefSeq Acc Id: NP_766084   ⟸   NM_172496
- Peptide Label: isoform 1
- UniProtKB: Q8CE81 (UniProtKB/Swiss-Prot),   Q8C7Q0 (UniProtKB/Swiss-Prot),   Q80TV4 (UniProtKB/Swiss-Prot),   Q7TQM9 (UniProtKB/Swiss-Prot),   Q6PAT4 (UniProtKB/Swiss-Prot),   Q60859 (UniProtKB/Swiss-Prot),   Q5NBX2 (UniProtKB/Swiss-Prot),   Q8CIM4 (UniProtKB/Swiss-Prot),   Q5NBX1 (UniProtKB/Swiss-Prot),   B2RWU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269922   ⟸   NM_001282993
- Peptide Label: isoform 2
- UniProtKB: G5E8P4 (UniProtKB/TrEMBL),   B2RWU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269923   ⟸   NM_001282994
- Peptide Label: isoform 3
- UniProtKB: G3UWY3 (UniProtKB/TrEMBL),   B2RWU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514544   ⟸   XM_006514481
- Peptide Label: isoform X2
- UniProtKB: B2RWU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241955   ⟸   XM_011243653
- Peptide Label: isoform X4
- UniProtKB: B2RWU4 (UniProtKB/TrEMBL)
- Sequence:
Cordon-bleu ubiquitin-like   WH2

Name Modeler Protein Id AA Range Protein Structure
AF-Q5NBX1-F1-model_v2 AlphaFold Q5NBX1 1-1337 view protein structure

RGD ID:8673986
Promoter ID:EPDNEW_M15024
Type:multiple initiation site
Name:Cobl_3
Description:Mus musculus cordon-bleu WH2 repeat , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15026  EPDNEW_M15027  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381112,295,601 - 12,295,661EPDNEW
RGD ID:6820638
Promoter ID:MM_KWN:6476
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000046755,   ENSMUST00000093315,   ENSMUST00000093316,   ENSMUST00000093317,   ENSMUST00000109649,   ENSMUST00000109650,   NM_172496,   UC007IBE.1,   UC007IBF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361112,365,301 - 12,365,801 (-)MPROMDB
RGD ID:8673992
Promoter ID:EPDNEW_M15026
Type:single initiation site
Name:Cobl_2
Description:Mus musculus cordon-bleu WH2 repeat , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15024  EPDNEW_M15027  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381112,412,146 - 12,412,206EPDNEW
RGD ID:8673994
Promoter ID:EPDNEW_M15027
Type:initiation region
Name:Cobl_1
Description:Mus musculus cordon-bleu WH2 repeat , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15024  EPDNEW_M15026  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381112,464,939 - 12,464,999EPDNEW


1 to 40 of 49 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000020173 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000046755 ENTREZGENE
  ENSMUST00000046755.14 UniProtKB/Swiss-Prot
  ENSMUST00000109650 ENTREZGENE
  ENSMUST00000109650.8 UniProtKB/Swiss-Prot
  ENSMUST00000109651 ENTREZGENE
  ENSMUST00000172919 ENTREZGENE
  ENSMUST00000172919.8 UniProtKB/Swiss-Prot
  ENSMUST00000172956 ENTREZGENE
  ENSMUST00000174874 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro COBL-like UniProtKB/Swiss-Prot
  Cordon-bleu_ubiquitin_domain UniProtKB/Swiss-Prot
  WH2_dom UniProtKB/Swiss-Prot
KEGG Report mmu:12808 UniProtKB/Swiss-Prot
MGD MGI:105056 ENTREZGENE
NCBI Gene 12808 ENTREZGENE
PANTHER PROTEIN CORDON-BLEU UniProtKB/Swiss-Prot
  PTHR47008 UniProtKB/Swiss-Prot
Pfam Cobl UniProtKB/Swiss-Prot
  WH2 UniProtKB/Swiss-Prot
PhenoGen Cobl PhenoGen
PROSITE WH2 UniProtKB/Swiss-Prot
SMART WH2 UniProtKB/Swiss-Prot
UniProt B2RWU4 ENTREZGENE, UniProtKB/TrEMBL
  COBL_MOUSE UniProtKB/Swiss-Prot
  F6RR81_MOUSE UniProtKB/TrEMBL
  F6ZEZ1_MOUSE UniProtKB/TrEMBL
  G3UWP1_MOUSE UniProtKB/TrEMBL
  G3UWY3 ENTREZGENE, UniProtKB/TrEMBL
  G3UZ73 ENTREZGENE, UniProtKB/TrEMBL
  G5E8P4 ENTREZGENE, UniProtKB/TrEMBL
  Q5NBX1 ENTREZGENE
  Q5NBX2 ENTREZGENE
  Q60859 ENTREZGENE
  Q6PAT4 ENTREZGENE
  Q7TQM9 ENTREZGENE
  Q80TV4 ENTREZGENE
  Q8C7Q0 ENTREZGENE
  Q8CE81 ENTREZGENE
1 to 40 of 49 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-14 Cobl  cordon-bleu WH2 repeat    cordon-bleu  Symbol and/or name change 5135510 APPROVED