Cdh23 (cadherin 23 (otocadherin)) - Rat Genome Database
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Gene: Cdh23 (cadherin 23 (otocadherin)) Mus musculus
Analyze
Symbol: Cdh23
Name: cadherin 23 (otocadherin)
RGD ID: 733852
MGI Page MGI
Description: Is expressed in several structures, including brain; genitourinary system; lung; sensory organ; and thymus. Used to study Usher syndrome type 1D and autosomal recessive nonsyndromic deafness 12. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH 1,2-dichloroethane; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4930542A03Rik; a; age related hearing loss 1; ahl; ahl1; bo; bob; bobby; bus; bustling; cadherin-23; mdfw; modifier of deaf waddler; nmf11; nmf112; nmf18; nmf181; nmf25; nmf252; otocadherin; sals; USH1; USH1D; v; waltzer
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,138,527 - 60,532,291 (-)NCBIGRCm39mm39
GRCm39 Ensembl1060,138,527 - 60,532,269 (-)Ensembl
GRCm381060,302,748 - 60,696,513 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,302,748 - 60,696,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv371059,766,022 - 60,159,238 (-)NCBIGRCm37mm9NCBIm37
MGSCv361059,698,731 - 60,052,690 (-)NCBImm8
Celera1061,400,142 - 61,796,629 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1030.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear ganglion morphology  (IAGP)
abnormal cochlear hair bundle tip links morphology  (IAGP)
abnormal cochlear hair cell inter-stereocilial links morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal cochlear hair cell physiology  (IAGP)
abnormal cochlear hair cell stereociliary bundle morphology  (IAGP)
abnormal cochlear nerve compound action potential  (IAGP)
abnormal cochlear outer hair cell morphology  (IAGP)
abnormal cochlear outer hair cell physiology  (IAGP)
abnormal cochlear sensory epithelium morphology  (IAGP)
abnormal defecation  (IAGP)
abnormal distortion product otoacoustic emission  (IAGP)
abnormal ear morphology  (IAGP)
abnormal ear physiology  (IAGP)
abnormal ear position  (IEA)
abnormal eye electrophysiology  (IAGP)
abnormal gait  (IAGP)
abnormal hair cell mechanoelectric transduction  (IAGP)
abnormal hearing electrophysiology  (IAGP)
abnormal hearing physiology  (IAGP)
abnormal inner ear morphology  (IEA)
abnormal inner hair cell kinocilium morphology  (IAGP)
abnormal inner hair cell stereociliary bundle morphology  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal maternal nurturing  (IEA)
abnormal motor capabilities/coordination/movement  (IEA)
abnormal organ of Corti morphology  (IAGP)
abnormal orientation of cochlear hair cell stereociliary bundles  (IAGP)
abnormal orientation of inner hair cell stereociliary bundles  (IAGP)
abnormal orientation of outer hair cell stereociliary bundles  (IAGP)
abnormal otolith morphology  (IEA)
abnormal outer hair cell kinocilium location or orientation  (IAGP)
abnormal outer hair cell kinocilium morphology  (IAGP)
abnormal outer hair cell stereociliary bundle morphology  (IAGP)
abnormal reflex  (IAGP)
abnormal response to novelty  (IAGP)
abnormal startle reflex  (IAGP)
abnormal stationary movement  (IAGP)
abnormal stria vascularis morphology  (IEA)
abnormal vestibular hair cell stereociliary bundle morphology  (IAGP)
abnormal vestibular system physiology  (IAGP)
absent cochlear microphonics  (IAGP)
absent distortion product otoacoustic emissions  (IAGP)
absent linear vestibular evoked potential  (IAGP)
absent outer hair cell stereocilia  (IAGP)
absent pinna reflex  (IAGP)
absent startle reflex  (IAGP)
ataxia  (IAGP)
bidirectional circling  (IAGP)
circling  (IAGP)
cochlear ganglion degeneration  (IAGP)
cochlear ganglion hypoplasia  (IAGP)
cochlear hair cell degeneration  (IAGP)
cochlear inner hair cell degeneration  (IAGP)
cochlear outer hair cell degeneration  (IAGP)
deafness  (IAGP)
decreased a-wave implicit time  (IAGP)
decreased b-wave implicit time  (IAGP)
decreased body weight  (IEA)
decreased circulating calcium level  (IEA)
decreased circulating cholesterol level  (IEA)
decreased circulating glucose level  (IEA)
decreased circulating insulin level  (IEA)
decreased circulating LDL cholesterol level  (IEA)
decreased circulating triglyceride level  (IEA)
decreased cochlear hair cell number  (IAGP)
decreased cochlear hair cell stereocilia number  (IAGP)
decreased cochlear inner hair cell number  (IAGP)
decreased cochlear outer hair cell number  (IAGP)
decreased erythrocyte cell number  (IEA)
decreased fasting circulating glucose level  (IEA)
decreased grooming behavior  (IAGP)
decreased inner hair cell stereocilia number  (IAGP)
decreased leukocyte cell number  (IEA)
decreased litter size  (IAGP)
decreased outer hair cell stereocilia number  (IAGP)
decreased startle reflex  (IAGP)
decreased total body fat amount  (IEA)
decreased vertical activity  (IAGP)
head bobbing  (IEA)
head shaking  (IAGP)
head tilt  (IAGP)
head tossing  (IAGP)
hyperactivity  (IAGP)
impaired hearing  (IAGP)
impaired righting response  (IEA)
impaired swimming  (IAGP)
increased bone mineral content  (IEA)
increased circulating chloride level  (IEA)
increased circulating sodium level  (IEA)
increased lean body mass  (IEA)
increased mean corpuscular hemoglobin  (IEA)
increased or absent threshold for auditory brainstem response  (IAGP)
increased susceptibility to age-related hearing loss  (IAGP)
increased susceptibility to noise-induced hearing loss  (IAGP)
novel environmental response-related retropulsion  (IEA)
organ of Corti degeneration  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
short inner hair cell stereocilia  (IAGP)
short outer hair cell stereocilia  (IAGP)
stereotypic behavior  (IEA)
stria vascularis degeneration  (IEA)
tremors  (IAGP)
trunk curl  (IEA)
vestibular saccular degeneration  (IEA)
vestibular saccular macula degeneration  (IAGP)
References

Additional References at PubMed
PMID:544312   PMID:678292   PMID:1912584   PMID:5098070   PMID:5955164   PMID:7333462   PMID:7610888   PMID:8034315   PMID:8735078   PMID:8790740   PMID:9021139   PMID:9039475  
PMID:9325047   PMID:9447922   PMID:9641316   PMID:10349636   PMID:10452381   PMID:10535453   PMID:10984423   PMID:11042159   PMID:11076861   PMID:11090341   PMID:11112345   PMID:11138009  
PMID:11175788   PMID:11322776   PMID:11335078   PMID:11350126   PMID:11386759   PMID:11423214   PMID:11678164   PMID:12121736   PMID:12204345   PMID:12209292   PMID:12407180   PMID:12787792  
PMID:13336002   PMID:13853422   PMID:14648237   PMID:14759567   PMID:15057245   PMID:15276680   PMID:15537665   PMID:15572405   PMID:15590703   PMID:15692809   PMID:15820310   PMID:15882573  
PMID:15882574   PMID:15925194   PMID:15928608   PMID:16005171   PMID:16141072   PMID:16141073   PMID:16219682   PMID:16235133   PMID:16281288   PMID:16426780   PMID:16481439   PMID:16545802  
PMID:16579977   PMID:16897347   PMID:16962269   PMID:17050716   PMID:17175124   PMID:17329413   PMID:17360538   PMID:17567809   PMID:17805295   PMID:17967520   PMID:18001149   PMID:18280008  
PMID:18339676   PMID:18662770   PMID:18799693   PMID:18971469   PMID:18996172   PMID:19057657   PMID:19270079   PMID:19321743   PMID:19339464   PMID:19487694   PMID:19756182   PMID:20058854  
PMID:20095043   PMID:20332152   PMID:20399731   PMID:20470874   PMID:20498078   PMID:20505086   PMID:20628639   PMID:20639393   PMID:20644563   PMID:20739546   PMID:20799038   PMID:20976199  
PMID:21165971   PMID:21211561   PMID:21267068   PMID:21272629   PMID:21423608   PMID:21436032   PMID:21532990   PMID:21677750   PMID:21689626   PMID:21865467   PMID:21873635   PMID:21875659  
PMID:22138310   PMID:22238076   PMID:22326520   PMID:22363448   PMID:22381527   PMID:22787034   PMID:22952717   PMID:23135401   PMID:23217710   PMID:23359017   PMID:23384607   PMID:23592719  
PMID:23658152   PMID:23792079   PMID:24172198   PMID:24221507   PMID:24239741   PMID:24920589   PMID:24952961   PMID:25624266   PMID:25762674   PMID:25852546   PMID:25904789   PMID:25921334  
PMID:26620972   PMID:26748055   PMID:26876963   PMID:26936824   PMID:27255811   PMID:27349180   PMID:27882946   PMID:28287619   PMID:28345280   PMID:28705869   PMID:28818524   PMID:28891466  
PMID:29111324   PMID:29261728   PMID:29486248   PMID:29874579   PMID:30033219   PMID:30597229   PMID:31247458   PMID:31776257   PMID:31818953   PMID:31949136   PMID:32003747   PMID:32327469  
PMID:32514013   PMID:32987832   PMID:33009420  


Genomics

Comparative Map Data
Cdh23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,138,527 - 60,532,291 (-)NCBIGRCm39mm39
GRCm39 Ensembl1060,138,527 - 60,532,269 (-)Ensembl
GRCm381060,302,748 - 60,696,513 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,302,748 - 60,696,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv371059,766,022 - 60,159,238 (-)NCBIGRCm37mm9NCBIm37
MGSCv361059,698,731 - 60,052,690 (-)NCBImm8
Celera1061,400,142 - 61,796,629 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1030.11NCBI
CDH23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1071,396,920 - 71,815,947 (+)EnsemblGRCh38hg38GRCh38
GRCh381071,396,920 - 71,815,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371073,156,677 - 73,575,704 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361072,826,697 - 73,245,710 (+)NCBINCBI36hg18NCBI36
Build 341072,826,696 - 73,076,543NCBI
Celera1066,439,492 - 66,858,274 (+)NCBI
Cytogenetic Map10q22.1NCBI
HuRef1067,150,783 - 67,156,961 (+)NCBIHuRef
CHM1_11073,439,263 - 73,857,682 (+)NCBICHM1_1
Cdh23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22028,240,643 - 28,622,490 (-)NCBI
Rnor_6.0 Ensembl2029,857,637 - 29,990,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02029,857,018 - 30,263,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02031,668,747 - 32,073,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,622,049 - 28,016,145 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12027,635,850 - 28,029,945 (-)NCBI
Celera2029,678,961 - 30,059,893 (-)NCBICelera
Cytogenetic Map20q11NCBI
Cdh23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,684,473 - 20,003,819 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,683,792 - 20,044,718 (-)NCBIChiLan1.0ChiLan1.0
CDH23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11070,391,661 - 70,810,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,434,801 - 70,810,240 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01067,866,979 - 68,286,008 (+)NCBIMhudiblu_PPA_v0panPan3
CDH23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl422,207,001 - 22,571,131 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1422,206,972 - 22,570,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdh23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365217,078,874 - 7,285,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,223,089 - 74,733,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,267,547 - 74,734,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,226,063 - 80,626,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103216037
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,475,126 - 59,893,824 (-)NCBI
Cdh23
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247545,356,006 - 5,725,774 (+)NCBI

Position Markers
U27340  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,170,748 - 83,170,896UniSTSGRCm38
GRCm381060,302,386 - 60,302,534UniSTSGRCm38
MGSCv371059,765,134 - 59,765,282UniSTSGRCm37
MGSCv37885,694,647 - 85,694,795UniSTSGRCm37
Celera1061,399,243 - 61,399,391UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map8C3UniSTS
cM Map108.0UniSTS
cM Map1035.0UniSTS
Whitehead/MRC_RH10689.52UniSTS
RH136606  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381060,302,319 - 60,302,531UniSTSGRCm38
MGSCv371059,765,067 - 59,765,279UniSTSGRCm37
Celera1061,399,176 - 61,399,388UniSTS
Cytogenetic Map10B4UniSTS
cM Map1035.0UniSTS
AI037048  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381060,302,267 - 60,302,406UniSTSGRCm38
MGSCv371059,765,015 - 59,765,154UniSTSGRCm37
Celera1061,399,124 - 61,399,263UniSTS
Cytogenetic Map10B4UniSTS
cM Map1035.0UniSTS
Whitehead/MRC_RH10692.09UniSTS
RH126059  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381060,445,908 - 60,446,118UniSTSGRCm38
MGSCv371059,908,656 - 59,908,866UniSTSGRCm37
Celera1061,544,186 - 61,544,396UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
Whitehead/MRC_RH10692.45UniSTS
UniSTS:224753  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381060,328,111 - 60,328,274UniSTSGRCm38
MGSCv371059,790,859 - 59,791,022UniSTSGRCm37
Celera1061,424,978 - 61,425,141UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.3UniSTS
Cdh23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
cM Map1030.3UniSTS
Psap  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381060,302,388 - 60,302,533UniSTSGRCm38
GRCm38883,170,749 - 83,170,894UniSTSGRCm38
MGSCv371059,765,136 - 59,765,281UniSTSGRCm37
MGSCv37885,694,648 - 85,694,793UniSTSGRCm37
Celera1061,399,245 - 61,399,390UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map10B4UniSTS
cM Map1035.0UniSTS
Cdh23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
Cdh23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
Cdh23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
Cdh23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
cM Map1030.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102171529368255809Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102984430763844387Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103109840365098534Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103170104065701188Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103390000071000000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4140150475401504Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104570000069300000Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104640000069400000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104809840370276821Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105660406061105062Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3288
Count of miRNA genes:663
Interacting mature miRNAs:848
Transcripts:ENSMUST00000073242, ENSMUST00000105461, ENSMUST00000105462, ENSMUST00000105463, ENSMUST00000105464, ENSMUST00000123309, ENSMUST00000124712, ENSMUST00000127312, ENSMUST00000128249, ENSMUST00000135638, ENSMUST00000144462, ENSMUST00000151194, ENSMUST00000153149, ENSMUST00000153525, ENSMUST00000153677, ENSMUST00000156501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02027189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02027206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF308939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ888000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ888001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ888002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY563159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY563160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY563163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY563164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU681829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU681830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC094979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073242   ⟹   ENSMUSP00000072973
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,302,748 - 60,657,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105461   ⟹   ENSMUSP00000101101
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,302,750 - 60,696,490 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105462   ⟹   ENSMUSP00000101102
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,302,748 - 60,657,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105463   ⟹   ENSMUSP00000101103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,302,750 - 60,696,490 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105464   ⟹   ENSMUSP00000101104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,302,750 - 60,696,490 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123309
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,657,266 - 60,687,257 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,376,866 - 60,380,192 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,375,450 - 60,387,035 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,303,299 - 60,657,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,303,299 - 60,657,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144462
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,376,772 - 60,406,453 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151194
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,303,274 - 60,321,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,583,079 - 60,696,490 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153525
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,303,274 - 60,321,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,628,480 - 60,653,033 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1060,303,352 - 60,305,649 (-)Ensembl
RefSeq Acc Id: NM_001252635   ⟹   NP_001239564
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,529 - 60,532,269 (-)NCBI
GRCm381060,302,750 - 60,696,490 (-)NCBI
Celera1061,399,607 - 61,796,629 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023370   ⟹   NP_075859
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,529 - 60,532,269 (-)NCBI
GRCm381060,302,750 - 60,696,490 (-)NCBI
MGSCv371059,766,022 - 60,159,238 (-)RGD
Celera1061,399,607 - 61,796,629 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045556
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,529 - 60,532,269 (-)NCBI
GRCm381060,302,750 - 60,696,490 (-)NCBI
Celera1061,399,607 - 61,796,629 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513602   ⟹   XP_006513665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,157,262 (-)NCBI
GRCm381060,302,748 - 60,321,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313927   ⟹   XP_017169416
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,493,375 (-)NCBI
GRCm381060,302,748 - 60,657,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313928   ⟹   XP_017169417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,140,215 - 60,532,291 (-)NCBI
GRCm381060,304,436 - 60,696,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313929   ⟹   XP_017169418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,159,152 (-)NCBI
GRCm381060,302,748 - 60,323,373 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313930   ⟹   XP_017169419
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,532,290 (-)NCBI
GRCm381060,302,748 - 60,696,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313931   ⟹   XP_017169420
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,141,348 (-)NCBI
GRCm381060,302,748 - 60,305,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245069   ⟹   XP_030100929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,138,527 - 60,522,749 (-)NCBI
GRCm381060,302,748 - 60,686,970 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_075859   ⟸   NM_023370
- Peptide Label: isoform 1 precursor
- UniProtKB: Q99PF4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239564   ⟸   NM_001252635
- Peptide Label: isoform 2 precursor
- UniProtKB: K4DI74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513665   ⟸   XM_006513602
- Peptide Label: isoform X3
- UniProtKB: Q99PF4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169419   ⟸   XM_017313930
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017169416   ⟸   XM_017313927
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169418   ⟸   XM_017313929
- Peptide Label: isoform X3
- UniProtKB: Q99PF4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169420   ⟸   XM_017313931
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017169417   ⟸   XM_017313928
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030100929   ⟸   XM_030245069
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000101101   ⟸   ENSMUST00000105461
RefSeq Acc Id: ENSMUSP00000101102   ⟸   ENSMUST00000105462
RefSeq Acc Id: ENSMUSP00000101103   ⟸   ENSMUST00000105463
RefSeq Acc Id: ENSMUSP00000101104   ⟸   ENSMUST00000105464
RefSeq Acc Id: ENSMUSP00000072973   ⟸   ENSMUST00000073242
Protein Domains
Cadherin

Promoters
RGD ID:6846706
Promoter ID:MM_ACW:4790
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Kidney,   Liver
Transcripts:CDH23.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,766,129 - 59,766,629 (-)MPROMDB
RGD ID:6819097
Promoter ID:MM_KWN:4231
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   MEF_B6,   Spleen
Transcripts:UC007FER.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,767,981 - 59,769,192 (-)MPROMDB
RGD ID:6819100
Promoter ID:MM_KWN:4235
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   MEF_B6
Transcripts:UC007FEU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,841,761 - 59,842,757 (-)MPROMDB
RGD ID:6819098
Promoter ID:MM_KWN:4236
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000042538
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,842,611 - 59,843,111 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890219 AgrOrtholog
Ensembl Genes ENSMUSG00000012819 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000072973 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000101101 UniProtKB/Swiss-Prot
  ENSMUSP00000101102 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000101103 UniProtKB/Swiss-Prot
  ENSMUSP00000101104 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073242 UniProtKB/TrEMBL
  ENSMUST00000105461 UniProtKB/Swiss-Prot
  ENSMUST00000105462 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000105463 UniProtKB/Swiss-Prot
  ENSMUST00000105464 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000153525 ENTREZGENE
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDH23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22295 UniProtKB/Swiss-Prot
MGD MGI:1890219 ENTREZGENE
NCBI Gene 22295 ENTREZGENE
PANTHER PTHR24025:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdh23 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B8QRJ1_MOUSE UniProtKB/TrEMBL
  B8QRJ2_MOUSE UniProtKB/TrEMBL
  CAD23_MOUSE UniProtKB/Swiss-Prot
  E9Q7M6_MOUSE UniProtKB/TrEMBL
  F8WIF5_MOUSE UniProtKB/TrEMBL
  K4DI74 ENTREZGENE, UniProtKB/TrEMBL
  Q5DUA3_MOUSE UniProtKB/TrEMBL
  Q5DUA4_MOUSE UniProtKB/TrEMBL
  Q5DUA5_MOUSE UniProtKB/TrEMBL
  Q99PF4 ENTREZGENE
UniProt Secondary E9QP63 UniProtKB/Swiss-Prot
  Q5QGS3 UniProtKB/Swiss-Prot
  Q5QGS4 UniProtKB/Swiss-Prot
  Q5QGS7 UniProtKB/Swiss-Prot
  Q5QGS8 UniProtKB/Swiss-Prot
  Q99NH1 UniProtKB/Swiss-Prot
  Q9D4N9 UniProtKB/Swiss-Prot