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ONTOLOGY REPORT - ANNOTATIONS

Term:cranial nerve morphogenesis
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Accession:GO:0021602 term browser browse the term
Definition:The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.


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cranial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:11694877) RGD PMID:11694877 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
abducens nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Mafb MAF bZIP transcription factor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:27181683)		 UniProt
RGD		 PMID:27181683 GO_REF:0000024 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
facial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4840554 (PMID:20826656)		 Ensembl
RGD		 PMID:20826656 GO_REF:0000107 NCBI chr20:11,222,171...11,350,416
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:2655195 (PMID:12874121) RGD PMID:12874121 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:10068633), (PMID:7935840)
MGI:96170 (PMID:9806922)		 UniProt
RGD		 PMID:7935840 PMID:9806922 PMID:10068633 GO_REF:0000024 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:95296 (PMID:9806922) RGD PMID:9806922 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:1857824 (PMID:8898234) RGD PMID:8898234 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:2151772 (PMID:9012503) RGD PMID:9012503 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:18356247), (PMID:18804103) RGD PMID:18356247 PMID:18804103 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18356247)		 Ensembl
RGD		 PMID:18356247 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Plxna3 plexin A3 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr  X:157,266,986...157,282,896
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
glossopharyngeal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:1857992|MGI:96184|MGI:96207 (PMID:9441667) RGD PMID:9441667 NCBI chr 4:82,599,860...82,643,831
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO MGI:96175|MGI:96207 (PMID:9441667) RGD PMID:9441667 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxd3 homeo box D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96175|MGI:96184 (PMID:9441667)		 Ensembl
RGD		 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
hypoglossal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4840554 (PMID:20826656)		 Ensembl
RGD		 PMID:20826656 GO_REF:0000107 NCBI chr20:11,222,171...11,350,416
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
oculomotor nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a involved_in IEA
ISO		 GO_REF:0000107
(PMID:9374403)		 Ensembl
RGD		 PMID:9374403 GO_REF:0000107 NCBI chr 1:165,590,757...165,595,122
Ensembl chr 1:156,178,754...156,183,118 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:8622766)		 UniProt
RGD		 PMID:8622766 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
olfactory nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxna1 plexin A1 involved_in ISO UniProtKB:P70208 (PMID:31690636) RGD PMID:31690636 NCBI chr 4:121,737,934...121,782,901
Ensembl chr 4:121,737,945...122,024,196 		JBrowse link
G Plxna3 plexin A3 involved_in ISO UniProtKB:P70206 (PMID:31690636) RGD PMID:31690636 NCBI chr  X:157,266,986...157,282,896
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin acts_upstream_of_or_within ISO MGI:3531484 (PMID:18586242) RGD PMID:18586242 NCBI chr  X:51,070,098...53,437,845
Ensembl chr  X:47,272,331...49,504,207 		JBrowse link
optic nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO MGI:1926253|MGI:2158714 (PMID:11344259), (PMID:12097474) RGD PMID:11344259 PMID:12097474 NCBI chr 2:177,479,091...177,487,306
Ensembl chr 2:175,181,402...175,189,619 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within ISO MGI:2677305 (PMID:12971893) RGD PMID:12971893 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO MGI:2149765 (PMID:12971893) RGD PMID:12971893 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:16342201) RGD PMID:16342201 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 acts_upstream_of_or_within ISO MGI:3043422 (PMID:15102918) RGD PMID:15102918 NCBI chr 2:197,392,746...197,406,606
Ensembl chr 2:194,704,639...194,718,400 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
positive regulation of optic nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18083586)		 UniProt
RGD		 PMID:18083586 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
trigeminal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO MGI:1857853 (PMID:15814794) RGD PMID:15814794 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Plxna3 plexin A3 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr  X:157,266,986...157,282,896
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
trochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a involved_in IEA
ISO		 GO_REF:0000107
(PMID:9374403)		 Ensembl
RGD		 PMID:9374403 GO_REF:0000107 NCBI chr 1:165,590,757...165,595,122
Ensembl chr 1:156,178,754...156,183,118 		JBrowse link
vagus nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:60,720,246...61,162,206
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179136 (PMID:20939858)		 UniProt
RGD		 PMID:20939858 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
vestibulocochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8b1 ATPase phospholipid transporting 8B1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19478059)		 Ensembl
RGD		 PMID:19478059 GO_REF:0000107 NCBI chr18:60,286,605...60,427,862
Ensembl chr18:58,018,268...58,157,396 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:18356247) RGD PMID:18356247 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18356247)		 Ensembl
RGD		 PMID:18356247 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure morphogenesis 3013
        cranial nerve morphogenesis 31
          abducens nerve morphogenesis + 2
          accessory nerve morphogenesis + 0
          cranial ganglion morphogenesis + 0
          cranial nerve formation + 10
          cranial nerve structural organization + 13
          facial nerve morphogenesis + 12
          glossopharyngeal nerve morphogenesis + 4
          hypoglossal nerve morphogenesis + 1
          oculomotor nerve morphogenesis + 2
          olfactory nerve morphogenesis + 3
          optic nerve morphogenesis + 6
          trigeminal nerve morphogenesis + 5
          trochlear nerve morphogenesis + 1
          vagus nerve morphogenesis + 2
          vestibulocochlear nerve morphogenesis + 6
Path 2
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        multicellular organism development 5350
          system development 4630
            nervous system development 2867
              nerve development 123
                cranial nerve development 77
                  cranial nerve morphogenesis 31
                    abducens nerve morphogenesis + 2
                    accessory nerve morphogenesis + 0
                    cranial ganglion morphogenesis + 0
                    cranial nerve formation + 10
                    cranial nerve structural organization + 13
                    facial nerve morphogenesis + 12
                    glossopharyngeal nerve morphogenesis + 4
                    hypoglossal nerve morphogenesis + 1
                    oculomotor nerve morphogenesis + 2
                    olfactory nerve morphogenesis + 3
                    optic nerve morphogenesis + 6
                    trigeminal nerve morphogenesis + 5
                    trochlear nerve morphogenesis + 1
                    vagus nerve morphogenesis + 2
                    vestibulocochlear nerve morphogenesis + 6
paths to the root