Bvd6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bvd6 (Brain ventricular dilatation QTL 6) Rattus norvegicus

Symbol: Bvd6
Name: Brain ventricular dilatation QTL 6
RGD ID: 1549848
Trait: brain ventricle morphology trait   (VT:0000822)    
Measurement Type: hydrocephalus severity score   (CMO:0001881)    
LOD Score: 3.1
P Value: 1.0E-4
Variance: 4.5
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21166,113,321 - 82,169,223RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01169,342,319 - 86,312,439RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01172,432,813 - 89,414,405RGDRnor5.0
RGSC_v3.41167,930,910 - 87,759,784RGDRGSC3.4
RGSC_v3.11167,988,499 - 87,800,381RGD
Cross Type: Not Available
Strains Crossed: F344 HTX/Hcj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Sst is a candidate Gene for Bvd6

Disease Annotations     Click to see Annotation Detail View
hydrocephalus  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
hydrocephaly  (IAGP)
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344  (IEA)
HTX/Hcj  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
2. Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
Related QTLs

Related QTL Description Reference
Bvd3 sub_region RGD:68196


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2499Dgkgdiacylglycerol kinase, gamma117838421278579158Rat
68422Cldn1claudin 1117442156974436728Rat
2724Gp5glycoprotein V (platelet)117044361370446705Rat
70551Lrrc15leucine rich repeat containing 15117046981770484268Rat
619886Tra2btransformer 2 beta117878888078807252Rat
69293Fetubfetuin B117808215878093022Rat
2137Apodapolipoprotein D116943126169452306Rat
3761Sstsomatostatin117695689676958173Rat
2361Clcn2chloride voltage-gated channel 2118019774180211657Rat
70515Pcyt1aphosphate cytidylyltransferase 1A, choline116831386068357828Rat
2980Kng2kininogen 2117791387677936247Rat
708547Muc13mucin 13, cell surface associated116695720866980264Rat
727841Ccdc50coiled-coil domain containing 50117333279873395333Rat
620322Cldn16claudin 16117429029874309588Rat
2893Il1rapinterleukin 1 receptor accessory protein117406299974199530Rat
621331Muc4mucin 4, cell surface associated116800824568053242Rat
620213Masp1MBL associated serine protease 1117733479477405271Rat
727971Klhl24kelch-like family member 24118084362180877649Rat
727977Uts2burotensin 2B117342438573439429Rat
619822Ufd1ubiquitin recognition factor in ER associated degradation 1118216161882185107Rat
620135Ap2m1adaptor related protein complex 2 subunit mu 1118035530780364218Rat
62081Hes1hes family bHLH transcription factor 1117070576370708176Rat
628730Slc12a8solute carrier family 12, member 8116711687667266548Rat
628869Itgb5integrin subunit beta 5116682842866944231Rat
621099Ppp1r2protein phosphatase 1, regulatory (inhibitor) subunit 2116947267669494468Rat
619808Hrghistidine-rich glycoprotein117805448878069402Rat
621441Ehhadhenoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase117924192779275173Rat
708411Camk2n2calcium/calmodulin-dependent protein kinase II inhibitor 2118028970280290829Rat
1305170Cpn2carboxypeptidase N subunit 2117048605470495937Rat
1304865Muc20mucin 20, cell surface associated116798781668001496Rat
628748Adipoqadiponectin, C1Q and collagen domain containing117772191277735644Rat
708380Eif2b5eukaryotic translation initiation factor 2B subunit epsilon118039443380404468Rat
70488Tfrctransferrin receptor116816341368185257Rat
62063Zfp148zinc finger protein 148116727645567385803Rat
620863Tp63tumor protein p63117483885875049764Rat
1304604Senp5SUMO specific peptidase 5116878469968819569Rat
2505Dlg1discs large MAGUK scaffold protein 1116891188369103230Rat
620131Bdh13-hydroxybutyrate dehydrogenase 1116930253469343173Rat
621865Kalrnkalirin, RhoGEF kinase116619815566803166Rat
1304568P3h2prolyl 3-hydroxylase 2117463426774775422Rat
620181Chrdchordin118017199480181166Rat
1307521Klhl6kelch-like family member 6118097091781010593Rat
70913Abcc5ATP binding cassette subfamily C member 5118047380980567257Rat
708378Senp2SUMO specific peptidase 2117898142979018274Rat
1306899Fyttd1forty-two-three domain containing 1116787796767907500Rat
1305752Psmd2proteasome 26S subunit ubiquitin receptor, non-ATPase 2118024836480258991Rat
1306346Ubxn7UBX domain protein 7116842789668460100Rat
61953Pak2p21 (RAC1) activated kinase 2116870794068768816Rat
1307373Dnajb11DnaJ heat shock protein family (Hsp40) member B11117815175078168259Rat
620163Fgf12fibroblast growth factor 12117199715172564757Rat
1305422Rubcnrubicon autophagy regulator116790753467964347Rat
1306004Alg3ALG3, alpha-1,3- mannosyltransferase118030048780306014Rat
1304790Fam43afamily with sequence similarity 43, member A117012825370131401Rat
1305602Ephb3Eph receptor B3117984066879859345Rat
1311100Slc51asolute carrier family 51 member A116829908668313485Rat
1309089Lsg1large 60S subunit nuclear export GTPase 1117013291970168526Rat
1307289Pigxphosphatidylinositol glycan anchor biosynthesis, class X116868712668703067Rat
1560559Teddm3transmembrane epididymal family member 3117998898479990143Rat
1307294Osbpl11oxysterol binding protein-like 11116753366967616795Rat
1309443Vps8VPS8 subunit of CORVET complex117940223679634234Rat
1359376Kng1kininogen 1117781275777835555Rat
1310468Abcf3ATP binding cassette subfamily F member 3118034047680352211Rat
1333751Or2aj4bolfactory receptor family 2 subfamily AJ member 4B118124605081246994Rat
1559643Mb21d2Mab-21 domain containing 2117182574871924770Rat
1311861Fbxo45F-box protein 45116855143068567053Rat
1333712Or2l13colfactory receptor family 2 subfamily L member 13C118135126881352206Rat
1333622Or2aj4olfactory receptor family 1 subfamily O member 4118127860581279546Rat
1311465Lmlnleishmanolysin like peptidase116765624167725889Rat
1310771Nrrosnegative regulator of reactive oxygen species116862864168646152Rat
1333362Or2l13olfactory receptor family 2 subfamily L member 13118140019781401135Rat
1309014Zdhhc19zinc finger DHHC-type palmitoyltransferase 19116827784768289110Rat
1311606IqcgIQ motif containing G116773011767771170Rat
1309225Eif4a2eukaryotic translation initiation factor 4A2117776412677770810Rat
1306200Lrch3leucine rich repeats and calponin homology domain containing 3116777249967872269Rat
1306226Tprg1tumor protein p63 regulated 1117532247075449907Rat
1309485Plaat1phospholipase A and acyltransferase 1117151749271537142Rat
1305957Tnk2tyrosine kinase, non-receptor, 2116811472568154254Rat
1308154Xxylt1xyloside xylosyltransferase 1116965848169790938Rat
1308155Meltfmelanotransferrin116888444668906300Rat
1306927Atp13a4ATPase 13A4117122219671359933Rat
1306974Rtp4receptor (chemosensory) transporter protein 4117723734177249194Rat
1306792Atp13a5ATPase 13A5117137638871515789Rat
1307107Pigzphosphatidylinositol glycan anchor biosynthesis, class Z116883184768851798Rat
1309345Bcl6BCL6, transcription repressor117685409076877389Rat
1308834Dvl3dishevelled segment polarity protein 3118036544680382641Rat
1306191Parlpresenilin associated, rhomboid-like118059405980620506Rat
1309604Tbccd1TBCC domain containing 1117816838678205314Rat
2075Ahsgalpha-2-HS-glycoprotein117812138878127998Rat
1310535LppLIM domain containing preferred translocation partner in lipoma117578732676426646Rat
1310675Ropn1rhophilin associated tail protein 1116609785466127148Rat
1307928Lamp3lysosomal-associated membrane protein 3118115349181224643Rat
1309590Etv5ETS variant transcription factor 5117860861878666221Rat
1305614Igf2bp2insulin-like growth factor 2 mRNA binding protein 2117887440278974392Rat
1306144Eif4g1eukaryotic translation initiation factor 4 gamma 1118022191980241958Rat
1310142Rfc4replication factor C subunit 4117774964277764123Rat
1333258Or2m12olfactory receptor family 2 subfamily M member 12118148697881487919Rat
1309763Snx4sorting nexin 4116746087267518143Rat
1562939Acap2ArfGAP with coiled-coil, ankyrin repeat and PH domains 2116953848769654156Rat
1303039Ece2endothelin-converting enzyme 2118025913080278446Rat
1303110Ostnosteocrin117344216773478498Rat
1562415Rps26-ps13ribosomal protein S26, pseudogene 13117035922770359796Rat
1563535Myl6-ps5myosin light chain 6, pseudogene 5117644843876448787Rat
1564585Ctdsp1-ps1CTD small phosphatase 1, pseudogene 1117713290877133863Rat
1563597Dynlt2bdynein light chain Tctex-type 2B116835913868367573Rat
1563956Rpl12l2ribosomal protein L12 like 2118016920580169831Rat
1561203Polr2hRNA polymerase II, I and III subunit H118019201780197468Rat
1559546Wdr53WD repeat domain 53116854264768551148Rat
1563170Gmncgeminin coiled-coil domain containing117383625573847698Rat
1560486Tm4sf19transmembrane 4 L six family member 19116837294568386192Rat
1562339C11h3orf70similar to human chromosome 3 open reading frame 70117934585779396140Rat
621352Cep19centrosomal protein 19116867786968687117Rat
1560980Rtp1receptor (chemosensory) transporter protein 1117742298277425498Rat
708423Opa1OPA1, mitochondrial dynamin like GTPase117110810071185170Rat
70955B3gnt5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5118114110281153206Rat
1561227Map3k13mitogen-activated protein kinase kinase kinase 13117909408779235181Rat
1559972Rpl27al7ribosomal protein L27A like 7117878105878781581Rat
1334380Or2l5olfactory receptor family 2 subfamily L member 5118137588681376824Rat
1311908Umpsuridine monophosphate synthetase116680610766816520Rat
1565444Mrpl40mitochondrial ribosomal protein L40118213339882139234Rat
1586963Cyp2ab1cytochrome P450, family 2, subfamily ab, polypeptide 1118058263380591217Rat
3676St6gal1ST6 beta-galactoside alpha-2,6-sialyltransferase 1117752683777653474Rat
1564491Vwa5b2von Willebrand factor A domain containing 5B2118030606780323220Rat
1584950Hirahistone cell cycle regulator118202446982133212Rat
1562500Smco1single-pass membrane protein with coiled-coil domains 1116851211368514999Rat
1560102Map6d1MAP6 domain containing 1118073414880740377Rat
1564641Heg1heart development protein with EGF-like domains 1116700695467095020Rat
1565541Elob-ps6elongin B, pseduogene 6117061778170618341Rat
1584953Hspa8-ps7heat shock protein family A (Hsp70) member 8, pseudogene 7118125631581258243Rat
1584955Prkaa1-ps2protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 2117788197177883466Rat
1563737Tmem44transmembrane protein 44117018112070216958Rat
1565722Rtp2receptor (chemosensory) transporter protein 2117691790476930760Rat
1566176Yeats2YEATS domain containing 2118074313480829253Rat
1585930Tiprl-ps1TOR signaling pathway regulator, pseudogene 1118013607080137293Rat
1589781Eef1a1-ps11eukaryotic translation elongation factor 1 alpha 1, pseudogene 11117363323773634788Rat
1590881Atp13a3ATPase 13A3117036499870442005Rat
1590533Snw1-ps3SNW domain containing 1, pseudogene 3117974307079744816Rat
1583711Ccnb1ip1-ps2cyclin B1 interacting protein 1, pseudogene 2117794408177945086Rat
1561572Sf3a2-ps1splicing factor 3A subunit 2, pseudogene 1117576854875769907Rat
1587483Crygscrystallin, gamma S117820717078212273Rat
1585168Rnf168ring finger protein 168116848631368508296Rat
1596124Chchd2l2-ps3coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 3116948069869481154Rat
1592849Liphlipase H117903222979081625Rat
1595717C11h22orf39similar to human chromosome 22 open reading frame 39118215599282160235Rat
1594590Kng2l1kininogen 2-like 1117797879578002976Rat
1596034Cyld-ps2CYLD lysine 63 deubiquitinase, pseudogene 2117170499271713933Rat
1591692Tmem41atransmembrane protein 41a117908400579090613Rat
1594108Ldha-ps15lactate dehydrogenase A, pseudogene 15117802245478023501Rat
1588683Psme3-ps4proteasome activator subunit 3, pseudogene 4117877350878774583Rat
1594092Hrg l1histidine-rich glycoprotein like 1117803937178049353Rat
1596188Ncbp2nuclear cap binding protein subunit 2116882102668829863Rat
1597039Rplp0-ps12ribosomal protein lateral stalk subunit P0, pseudogene 12116818532968194901Rat
1598124Rps7-ps3ribosomal protein S7, pseudogene 3118043776080438362Rat
1594670Pabpc4-ps2poly(A) binding protein, cytoplasmic 4, pseudogene 2117439745074399183Rat
2319156Mast2-ps1microtubule associated serine/threonine kinase 2, pseudogene 1117749966677502443Rat
2318744Rps15al2ribosomal protein S15A-like 2118040865680409118Rat
2318248LOC10036583940S ribosomal protein S3a-like117614280076143706Rat
2318335Hmgn2-ps1high mobility group nucleosomal binding domain 2, pseudogene 1117832119978321970Rat
2319568Iglc1immunoglobulin lambda constant 1118194796681949822Rat
2322069Fam131afamily with sequence similarity 131, member A118021157780221527Rat
2322856Tmem207transmembrane protein 207117425104274270180Rat
2322462Rtraf-ps1RNA transcription, translation and transport factor, pseudogene 1117506032475216590Rat
2321725Nudt2-ps1nudix hydrolase 2, pseudogene 1117979752679798400Rat
2322514Abt1-ps1activator of basal transcription 1, pseudogene 1117456872274569685Rat
2322532Il13ra1-ps1interleukin 13 receptor subunit alpha 1, pseudogene 1117125503571258723Rat
2323795Rpl35aribosomal protein L35A116772603167729953Rat
2325461Mir28microRNA 28117597552375975608Rat
2325484Mir1224microRNA 1224118030690280306986Rat
6489863LOC100911962uncharacterized LOC100911962117824763278249722Rat
6484481Igll2immunoglobulin lambda likepolypeptide 2118155468081911935Rat
6499341LOC100910319uncharacterized LOC100910319117581962075823992Rat
7489032Mir6323microRNA 6323118105206581052169Rat
7542563LOC102548576uncharacterized LOC102548576117339851173403897Rat
7542669LOC102554403uncharacterized LOC102554403117064419670656791Rat
7508589LOC102552083uncharacterized LOC102552083117126345071269923Rat
7503836Ewsr1-ps3EWS RNA-binding protein 3118099500380997069Rat
7654032LOC102547398uncharacterized LOC102547398118046153480468553Rat
7640211LOC102550974uncharacterized LOC102550974116926148069271169Rat
7656435LOC102553356uncharacterized LOC102553356117671128176721105Rat
7595638LOC102553680uncharacterized LOC102553680116980454269837672Rat
7642671LOC102554451uncharacterized LOC102554451117569607875714051Rat
7644981St6gal1lST6 beta-galactoside alpha-2,6-sialyltransferase 1 like117765253077658971Rat
7555728LOC102548792uncharacterized LOC102548792117018599870189950Rat
7568858LOC102553750uncharacterized LOC102553750117659112176596688Rat
7569107LOC102547306uncharacterized LOC102547306117065946470675176Rat
7573197LOC102551589uncharacterized LOC102551589118025909080266788Rat
7546617LOC102550088uncharacterized LOC102550088118005471980078477Rat
7585592LOC102547530uncharacterized LOC102547530117082178270842973Rat
7735872LOC102557186uncharacterized LOC102557186117340667873420224Rat
7750754LOC102549085uncharacterized LOC102549085117006936870115798Rat
7677093LOC102547162uncharacterized LOC102547162116824913268272391Rat
7682905LOC102549772uncharacterized LOC102549772116886436168867008Rat
7732114Eef1akmt4EEF1A lysine methyltransferase 4118029211380299670Rat
7737779LOC102551795uncharacterized LOC102551795118035226380355743Rat
7738503LOC102552590uncharacterized LOC102552590117837728378402994Rat
7741708LOC102551647uncharacterized LOC102551647118032248680342460Rat
9097663LOC103690765extensin-like117060818570608934Rat
9082951Ahcy-ps11adenosylhomocysteinase, pseudogene 11117748342577484973Rat
9251123LOC103690608uncharacterized LOC103690608117664822476657835Rat
9338791LOC10369065860S ribosomal protein L15 pseudogene118043419480434834Rat
9432497LOC103690757macrophage-capping protein pseudogene117464701374710453Rat
9415494LOC103693588uncharacterized LOC103693588116797443067979898Rat
10395319LpposLIM domain containing preferred translocation partner in lipoma, opposite strand117642541576426512Rat
11373170LOC108352383uncharacterized LOC108352383117618324776193533Rat
11449348LOC108352384uncharacterized LOC108352384117934144479345742Rat
11433872LOC10835239960S ribosomal protein L26-like 1 pseudogene117196655971967694Rat
11471078LOC108352357uncharacterized LOC108352357117800522178012389Rat
11447782Dynll1-ps3dynein light chain LC8-type 1, pseudogene 3116694882766949432Rat
11453386LOC108352352uncharacterized LOC108352352117088685470910339Rat
11425590LOC108352349uncharacterized LOC108352349116884425868860802Rat
11407001Trnam-cau3transfer RNA methionine (anticodon CAU) 3117867870078678771Rat
11402614LOC108352385uncharacterized LOC108352385117942761479433062Rat
11486221LOC108352401uncharacterized LOC108352401118072351080725908Rat
41167741LOC120095776small nucleolar RNA SNORA79116855477768554919Rat
41203638LOC120095698uncharacterized LOC120095698118008421180089447Rat
41248894LOC120095725U7 small nuclear RNA117641296876413034Rat
41281933LOC120095727small nucleolar RNA SNORA63117776800277768126Rat
41139493LOC120095749small nucleolar RNA SNORA17116872013668720265Rat
41169533LOC120095684uncharacterized LOC120095684117074016670743401Rat
41287362LOC120095689uncharacterized LOC120095689117683813476853989Rat
41386553LOC120095813U6 spliceosomal RNA118146047781460584Rat
41091877LOC120095680uncharacterized LOC120095680116998141070023987Rat
41116675LOC120095734small nucleolar RNA SNORA13118062492380625057Rat
41118012LOC120095687uncharacterized LOC120095687117661705876630585Rat
41145464Snord2small nucleolar RNA, C/D box 2117776947577769543Rat
41209682LOC120095700uncharacterized LOC120095700118102557781058687Rat
41259569Snora81small nucleolar RNA, H/ACA box 81117776757977767756Rat
41260492Trnat-agu24transfer RNA threonine (anticodon AGU) 24118091804980918121Rat
41329650LOC120095670uncharacterized LOC120095670116858149168588456Rat
41096241LOC120095795U2 spliceosomal RNA116813511468135233Rat
41178581LOC120095678uncharacterized LOC120095678116975363169759747Rat
41213514LOC120095699uncharacterized LOC120095699118041571780454559Rat
41264294LOC120095674uncharacterized LOC120095674116927084769290769Rat
41123245Rpl10-ps11ribosomal protein L10, pseudogene 11117446751274475789Rat
41192302LOC120095726small nucleolar RNA SNORA63117776665477766782Rat
41180783LOC120095807U6 spliceosomal RNA116820041468200520Rat
41216067Snora4small nucleolar RNA, H/ACA box 4117776632577766464Rat
41183084LOC120095792U2 spliceosomal RNA117248655372486710Rat
41269461Ncbp2as2NCBP2 antisense 2 (head to head)116882995068830715Rat
41291360H3f3a-ps2H3.3 histone A, pseudogene 2117780108777801454Rat
41372264LOC120095666uncharacterized LOC120095666116751817267522772Rat
41349001LOC120095669uncharacterized LOC120095669116832028568327078Rat
41162418LOC120095818U6 spliceosomal RNA117997194179972044Rat
41107307LOC120095683uncharacterized LOC120095683117035450370358842Rat
41197952LOC120095747small nucleolar RNA SNORA17117749744877497579Rat
41275152LOC120095761small nucleolar RNA SNORA17118148185781481980Rat
41352856LOC120095751U1 spliceosomal RNA118016192980162092Rat
40947157Rpl13a-ps5ribosomal protein L13A, pseudogene 5117708077777081566Rat
40973363Snord66small nucleolar RNA, C/D box 66118023015280230226Rat
41339693LOC120095553uncharacterized LOC120095553116635073066366306Rat
41341100Or2l13l-ps2olfactory receptor family 2 subfamily L member 13 like, pseudogene 2118130916281310272Rat
40926308LOC120095732small nucleolar RNA SNORA36 family116736888067369010Rat
40955254Ccnb1ip1-ps4cyclin B1 interacting protein 1, pseudogene 4117780357577804448Rat
40999098LOC120095692uncharacterized LOC120095692117869188878709582Rat
40960446LOC120095677uncharacterized LOC120095677116977949969782866Rat
40991205LOC120095682uncharacterized LOC120095682117032832870335873Rat
40940605LOC120095667uncharacterized LOC120095667116810548168114450Rat
40965619LOC120095552uncharacterized LOC120095552116642486366426504Rat
40943335LOC120095770small nucleolar RNA SNORA17118203589182035985Rat
40995627LOC120095681uncharacterized LOC120095681117023491270238937Rat
41024616LOC120095686uncharacterized LOC120095686117406563674081511Rat
41048265LOC120095668uncharacterized LOC120095668116825634668261022Rat
41048357LOC120095690uncharacterized LOC120095690117765910477672704Rat
41315717LOC120095697uncharacterized LOC120095697118003073880054940Rat
41257003LOC120095695uncharacterized LOC120095695117967834779683252Rat
41297945Prkaa1-ps1protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 1117788807377897420Rat
41336808LOC120095679uncharacterized LOC120095679116993900569958053Rat
41035465LOC120095763small nucleolar RNA SNORA17117591194175912071Rat
41061597LOC120095691uncharacterized LOC120095691117849171778496661Rat
41301821LOC120095571uncharacterized LOC120095571117034029270344905Rat
41235646LOC120095672uncharacterized LOC120095672116889257068895856Rat
41042846Ewsr1-ps5EWS RNA-binding protein 5118099316280996036Rat
41241227LOC120095693small ubiquitin-related modifier 2-like117916345779164088Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34725D11Mgh3168116642214866422316Ratregion
11291D11Mgh7161117757016877570330Ratregion
11292D11Got72144117757022577570369Ratregion
11343D11Wox2156117695623676956380Ratregion
11344D11Arb1223117695623576956458Ratregion
37096D11Rat92149117410677274106899Ratregion
37942D11Rat46178117885132978851519Ratregion
34912D11Rat30167117449920974499378Ratregion
35094D11Rat2145116752590367526048Ratregion
35953D11Rat37164117211751372117673Ratregion
38284D11Rat47211117063319470633407Ratregion
38382D11Rat45224118118429181184507Ratregion
40380D11Rat62173116771505867715230Ratregion
40550D11Rat60171117161796871618130Ratregion
40678D11Rat59213117130873871308949Ratregion
38672D11Rat51239117026245170262681Ratregion
40048D11Rat58164117687881276878990Ratregion
40082D11Rat82173117847461278474785Ratregion
38964D11Rat42102117688121076881304Ratregion
39084D11Rat93240116611332166113562Ratregion
41952D11Arb2199117747324577473444Ratregion
41954D11Arb4236116642214166422377Ratregion
41256D11Rat61165116944607069446234Ratregion
41482D11Rat57170117420421074204382Ratregion
42954D11Rat115173116861141968611592Ratregion
42955D11Rat106132116834015468340286Ratregion
42956D11Rat105205117113489671135104Ratregion
42957D11Rat104237117429126074291612Ratregion
42958D11Rat103225117937185779372066Ratregion
42959D11Rat90207117973014479730349Ratregion
42376D11Rat117115117648357876483653Ratregion
40870D11Rat55231117946973379469960Ratregion
40938D11Rat56195117571807775718276Ratregion
41692D11Rat89219118216900182169223Ratregion
41756D11Rat91234118097033780970606Ratregion
60568D7Got152172116786709467867266Ratregion
44847D11Got73300117885134078851641Ratregion
44849D11Got78198117873113978731336Ratregion
44851D11Wox7266117406199274062268Ratregion
44852D11Got70247117684170876841952Ratregion
44855D11Got66169117444867174448840Ratregion
44857D11Got62162117211205372112215Ratregion
44858D11Got63206117171787371718079Ratregion
44862D11Got53112116641439566414504Ratregion
44864D11Got54166116710827267108435Ratregion
44876D11Got58203116786711267867315Ratregion
629586D11Mit11221116750729367507514Ratregion
59998D11Got61149117208094572081090Ratregion
59999D11Got65117117471376974713884Ratregion
60000D11Got67118117449688874497006Ratregion
60001D11Got6988117591732075917412Ratregion
60002D11Got71170117684175576841925Ratregion
60003D11Got74359117838573978386094Ratregion
60004D11Got75210117826250378262713Ratregion
60005D11Got7994118003914180039232Ratregion
60006D11Got80202118097522980975431Ratregion
60007D11Got81218118212658482126804Ratregion
66624D11Mco1240117237393272374168Ratregion
67350D11Arb13183117245397172454154Ratregion
1630206D11Wox15117483978074839933Ratregion
1630263D11Got116118116783920567839323Ratregion
1627941D11Got112206117246224372462449Ratregion
1628497D11Uwm1174118062455880624732Ratregion
1636528D2Got332131117651632676516356Ratregion
1637815D11Got11892116771755867717650Ratregion
1634138D11Cebr1265117842454578424810Ratregion
1634385D11Wox16236118020845080208686Ratregion
2325914D6Hmgc2188117623806776238098Ratregion
7206710UniSTS:4804741173118028968480290857Ratregion
7205898UniSTS:4856331148118028970880290856Ratregion
7193135Ephb3179117984124279841421Ratregion
7192369Ephb31434117984976679851200Ratregion
5035733STS-L28957186116831723268317418Ratregion
7206438Cldn11090117443540074436490Ratregion
5035859PMC24644P1786117695715076957936Ratregion
5036547Zfp148205116728346867283673Ratregion
5039000RH127455193117752706577527258Ratregion
5036591AU048531123117471376474713885Ratregion
5035604T03659221118024858880248950Ratregion
5033895RH140526111116877002268770133Ratregion
5033949RH140729212117737396077374172Ratregion
5025946RH130304214116832975168329965Ratregion
5026100RH130910201117805462178054822Ratregion
5028579AA959454242117578732775787569Ratregion
5028581AI480666219116727764767277866Ratregion
7206152UniSTS:532277491118036780880368299Ratregion
5031486AU048165253117781902377819275Ratregion
5034071RH141250180118013447080134650Ratregion
5034077RH141276150116700779967007949Ratregion
5031544AU047979278117685607876856356Ratregion
5026396RH132045193116933815769338350Ratregion
5031818AU047052153116990252769902675Ratregion
5034390RH118405153118030575380305906Ratregion
5026572RH132726204118074337580743579Ratregion
5034752AI599309166117110858671108752Ratregion
5034766AI104888250118087377180874021Ratregion
5026808RH133611150117972528779725437Ratregion
5026856RH133792204116881915368819357Ratregion
5029439Muc40116800863368009770Ratregion
5027077RH70256194117984074079840934Ratregion
5032477RH126681213117879516678795379Ratregion
5035334AW529860192117208500272085194Ratregion
5035370BQ190983192116888541168885603Ratregion
5035380BE115254164118209172882091892Ratregion
5029925BE097868151116862958768629738Ratregion
5035190AW528025186118039529280395595Ratregion
5035202AW535442151117897410778974258Ratregion
5035228BM390883154118066368080663834Ratregion
5027501X5146895117695803876958134Ratregion
5027503AF037260116116811493968115055Ratregion
5030099BE110286151116727967967279830Ratregion
5032869RH136786127116856676468566891Ratregion
5032977RH137176204118034057680340780Ratregion
5027647BB16507674117820047878200552Ratregion
5033039RH137364168116676251066762678Ratregion
5025142RH126722203117578743175787634Ratregion
5025280RH127712188116796397467964162Ratregion
5025292RH127760186117845908878459274Ratregion
5030687BF398840165116811399568114160Ratregion
5025602RH128953187116945210969452296Ratregion
5028077U4146586117687636376876449Ratregion
5028111Z49086200117984074079840940Ratregion
5028179D16Mit101157117710697677107133Ratregion
5028187D16Mit229105116948368369483788Ratregion
5033627RH139519199116765572467655924Ratregion
5025616RH129005211117738553777385748Ratregion
5025738RH129469217116727578367276000Ratregion
5030955BF399765192116913981769140009Ratregion
5033745RH139965210116848736968487579Ratregion
5025800RH129723220117752691377527133Ratregion
5051917RH94733144117857675978576903Ratregion
5055047RH143575257116680233666802593Ratregion
5056437RH144378161118026329180263452Ratregion
5054059RH143007164117339870173398865Ratregion
5056639RH144494100116784275567842851Ratregion
5057470AA858773207116949426669494473Ratregion
5052163RH94876259117695750776957766Ratregion
5055459RH143813175118073462380734798Ratregion
5054599RH143317101116753373767533838Ratregion
5054627RH143333183116933732869337511Ratregion
5059456AW530915165116894621368946378Ratregion
5059456AW530915165116894621368946378Ratregion
5054785RH143424108118021801280218120Ratregion
5057894BI277248166118024850080248666Ratregion
5058540AI555746203118056696880567171Ratregion
5058572BI290823177117578948475789661Ratregion
5058624AA899041180116965385369654033Ratregion
5055857RH144042183116864586268646045Ratregion
5055453RH143810265118050603180506296Ratregion
5059784BE097864178116624161366241791Ratregion
5055659RH143928155116811525768115412Ratregion
5049818RH133699185117021660570216908Ratregion
5058510AW523989170117921945979219629Ratregion
5059086BF387449156117943083079430986Ratregion
5050156RH133894187117408102774082650Ratregion
5059248BF387879153118018877280188925Ratregion
5059324BG377348150117747731677477466Ratregion
5057786BI277102184117333291873333102Ratregion
5050664RH134187202117122643971227134Ratregion
5053861RH142893109117230265372302765Ratregion
5052543AI159736311116695722966957540Ratregion
5050990RH134374203117808220378082406Ratregion
5051094RH134436181117776420977764390Ratregion
5050270RH133960184116727921067279394Ratregion
5051190RH134491189116811481168115000Ratregion
5051302RH134555185118216191782162102Ratregion
5054211RH143094142118021220380212345Ratregion
5051655AW554757134117898316878983302Ratregion
5051657AA53680286116882270168822787Ratregion
5044120RH130421208117642695876427166Ratregion
5044170RH130450206118191511681915322Ratregion
5044170RH130450206118194952381949729Ratregion
5040850RH128519185116792833367928518Ratregion
5043282RH129936220117774659577746815Ratregion
5041146RH128689187118035531480355501Ratregion
5045408RH131161192116831312968313321Ratregion
5041328RH128794197116711693567117132Ratregion
5045800RH131386193117642629676426489Ratregion
5044674RH130739188118030608680306274Ratregion
5044682RH130743198118084370480843902Ratregion
5044688RH130747197117578754475787741Ratregion
5046370RH131714217117032848670328703Ratregion
5044360RH130558219117824787978248098Ratregion
5045434RH131176203116704776267047965Ratregion
5047452RH132336216116964864669648862Ratregion
5046114RH131566187116728108267281269Ratregion
5045822RH131398184118122160381221787Ratregion
5049088RH133279213117723821277238425Ratregion
5049286RH133393198116876843468768632Ratregion
5046598RH131845188118105834781058536Ratregion
5048034RH132670206117939570979395915Ratregion
5048092RH132703195118074337580743570Ratregion
5049372RH133443184118162352881623712Ratregion
5047042RH132100218116854271468542932Ratregion
5047066RH132114181117813234278132523Ratregion
5048210RH132771213117135966671359879Ratregion
5048260RH132800186116839131168391499Ratregion
5049660RH133608209117611264376112852Ratregion
5041962RH129159215118019370880193923Ratregion
5041978RH129168192117898282378983015Ratregion
5042162RH129276206116881926268819468Ratregion
5047310RH132254186117940225179402437Ratregion
5047412RH132313210118046156780461777Ratregion
5039898RH127971220117695784676958066Ratregion
5042436RH129433193117151754071517733Ratregion
5042542RH129497217117909035679090573Ratregion
5042628RH129549185116883047168830656Ratregion
5042708RH129598165118101006181010226Ratregion
5040462RH128297183116831398968314172Ratregion
5039896RH127970186118036554780365733Ratregion
5040938RH128570188118213745282137640Ratregion
5041058RH128639194118074204880742242Ratregion
5071946RH135376200117888801078888210Ratregion
5072126RH136666203117866444678664649Ratregion
5074072RH137804129117202536972025498Ratregion
5075310RH138521153117635083576350988Ratregion
5075786RH138796242117073033170730573Ratregion
5076114RH138987154116786985667870010Ratregion
5072640RH136967185116848689968487084Ratregion
5076700RH139328125116788011367880238Ratregion
5076782RH139375102116787808267878184Ratregion
5075468RH138611182116785103067851212Ratregion
5074888RH138276134116896135268961486Ratregion
5074914RH138291154116669806466698218Ratregion
5080616RH141682184116979059569790779Ratregion
5080708RH141735198117897367478973872Ratregion
5077282RH139667196116882073468820930Ratregion
5075060RH138375210116827786868278535Ratregion
5077298RH139676217117857879978579016Ratregion
5078158RH140177204117927461779274821Ratregion
5079824RH141224196116787844567878641Ratregion
5080006RH141328180116785340567853585Ratregion
5078122RH140156201117256254772562748Ratregion
5080100RH141383187117579022275790409Ratregion
5080124RH141397151118029211280292263Ratregion
5078458RH140354138116765582267655961Ratregion
5070870RH134753190117939452379394713Ratregion
5080276RH141486185117898148478981669Ratregion
5080312RH141507205117998891979989119Ratregion
5080362RH141535191116800127168001462Ratregion
5070902RH134772208118114138581141593Ratregion
5080534RH141635205116784116167841366Ratregion
5078750RH140530159117256250572562664Ratregion
5078876RH140603189116928110069281289Ratregion
5073568RH137511187117815187378152060Ratregion
5073766RH137626156116679761866797774Ratregion
5070742RH134678201117939391579394116Ratregion
5074634RH138129128117406303874063166Ratregion
5061776AI715998132118213903182139163Ratregion
5064972BF405372101116944146669441567Ratregion
5065036BE108960197116835541468355611Ratregion
5066784AU048153192117637727476377466Ratregion
5067202AU047899177117816282478163001Ratregion
5067466AU047727168116954049069540658Ratregion
5067592AU047653186117570973075709916Ratregion
5068534AU047088174118062441280624584Ratregion
5070177RH94517147118018799480188141Ratregion
5060040BF388375121117599367575993796Ratregion
5065136AI044813203116681104666811249Ratregion
5060432BE110052211116655077566550986Ratregion
5065572BE109304167116825794968258116Ratregion
5060958AA874911196118035558380355779Ratregion
5062640BF40363895117091009670910191Ratregion
5064442AI501553145117939243579392580Ratregion
5060254BG378170179117907616879076347Ratregion
5063828AW535588167116965185369652022Ratregion
5065202BE121163157117921844179218598Ratregion
5062196BE106303201118215382182154022Ratregion
5062356BI288724201116876926568769466Ratregion
5062404BF397888151117241392372414074Ratregion
5065548BE109290155116895357068953725Ratregion
5062720AI71656491118039467280394763Ratregion
5061046AI112486214116867788468678098Ratregion
5061062BG379202160117219148572191645Ratregion
5061096AW532277150118017065880170808Ratregion
5064498BI296803173116953814669538319Ratregion
5064576BF399377165117943114279431307Ratregion
5066232PMC123023P2187117695780176957988Ratregion
5063136BI295978183117758173577581918Ratregion
5064672BF399547104117841043478410538Ratregion
5066294PMC139890P1132117776665177766783Ratregion
5064858BE108645150116788372467883874Ratregion
5061654BF396995212116658421666584428Ratregion
5086289AI535225202117443514174435343Ratregion
5086355AA850138185118191157681911761Ratregion
5086355AA850138185118194598481946169Ratregion
5087422Ephb3695117984072579841420Ratregion
5086417AA965213202117044095770441159Ratregion
5086447BM385725192116718517267185364Ratregion
5087838Eif4a2188117776652777766952Ratregion
5087922Hira157118213247082132627Ratregion
5089163AU048993275117585389775854172Ratregion
5089961AU049467185117785623477856419Ratregion
5088151UniSTS:144823780116728305967283839Ratregion
5089255AU049047209116895973468959945Ratregion
5089365AU049112256117178172871781984Ratregion
5090861AU050010167116710826767108434Ratregion
5083747AI599402207117812150878121715Ratregion
5083883AI010659172117333249873332670Ratregion
5088811AU048786249116849045368490702Ratregion
5090435AU049748216117723367177233887Ratregion
5090635AU049871121117873121678731337Ratregion
5081517BE117128163117888628178886444Ratregion
5081703BF40829795117892842978928524Ratregion
5084416AI17673696117772202877722124Ratregion
5084482AA850488149117384689073847039Ratregion
5081869BI273900216118036460580364821Ratregion
5081967BE118936168116880839568808563Ratregion
5081989BE118996191118021429180214482Ratregion
5085513AI045433118116787869467878812Ratregion
5090253AU049641295117493039674930693Ratregion
5088973AU048879277116819096068191237Ratregion
5089203AU049016241116673977466740015Ratregion
5089203AU049016241116673992466740015Ratregion
5082667BE119962154116876766868767822Ratregion
5084522AI169712180116930280969302989Ratregion
5082989BF390582151116623882966238980Ratregion
5083175BF390931198118034009780340295Ratregion
5085629BM383343199117097463470974833Ratregion
5086789BE114628168117021771270217880Ratregion
5081925BE118763178116944329869443476Ratregion
5084044AI40823894117820537078205464Ratregion
5502589RH12546195117815197378152068Ratregion
5507557D18S1297114118216748082168493Ratregion
5507652AA4759090116683054666831914Ratregion
5507707SST-112F84117695713176957836Ratregion
5503933UniSTS:256695853117695697476957827Ratregion
5506469G35720169117856980678569975Ratregion
5507125UniSTS:224674192116695801566958207Ratregion
5500272D22S1095E102118202458182024683Ratregion
5500298D20S100580117776452777764607Ratregion
5502553RH125315189116867868368678872Ratregion
5503246UniSTS:237474226117776898477769210Ratregion
5503248UniSTS:237479202117048400870484210Ratregion
5504183UniSTS:259614377117070651770707894Ratregion
5504508PMC25851P285117486563574865720Ratregion
5501681Hes1401117070583470706235Ratregion
5505390Ewsr10118099472480995517Ratregion
5502981Ccnb1ip1500117780377777804277Ratregion
Position Markers

Flank 1: (D11Rat93)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21166,113,321 - 66,113,562 (+)MAPPER
Rnor_6.01169,342,319 - 69,342,559NCBI
Rnor_5.01172,432,813 - 72,433,053UniSTS
RGSC_v3.41167,930,910 - 67,931,151RGD
RGSC_v3.41167,930,911 - 67,931,151UniSTS
RGSC_v3.11167,988,499 - 67,988,740RGD
Celera1165,567,691 - 65,567,931UniSTS
SHRSP x BN Map1129.8399UniSTS
SHRSP x BN Map1129.8399RGD
FHH x ACI Map1148.5199RGD
Cytogenetic Map11q22UniSTS
Peak: (D11Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21178,851,329 - 78,851,519 (+)MAPPER
Rnor_6.01182,442,929 - 82,443,118NCBI
Rnor_5.01185,534,123 - 85,534,312UniSTS
RGSC_v3.41181,091,341 - 81,091,531RGD
RGSC_v3.41181,091,342 - 81,091,531UniSTS
RGSC_v3.11181,148,931 - 81,149,120RGD
Celera1177,714,115 - 77,714,304UniSTS
RH 3.4 Map11650.2UniSTS
RH 3.4 Map11650.2RGD
RH 2.0 Map1160.2RGD
SHRSP x BN Map1135.7599RGD
FHH x ACI Map1156.1999RGD
Flank 2: (D11Rat89)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,169,001 - 82,169,223 (+)MAPPER
Rnor_6.01186,312,220 - 86,312,439NCBI
Rnor_5.01189,414,186 - 89,414,405UniSTS
Celera1180,949,492 - 80,949,711UniSTS
SHRSP x BN Map1138.2699UniSTS
SHRSP x BN Map1138.2699RGD
FHH x ACI Map1157.2499RGD
Cytogenetic Map11p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MAPMAKER/QTL (version1.1b) was used for LOD score calculations and composite interval mapping; MAPMAKER/EXP(version 3.0b) was used for interval mapping 68196