Igll2 (immunoglobulin lambda likepolypeptide 2) - Rat Genome Database

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Gene: Igll2 (immunoglobulin lambda likepolypeptide 2) Rattus norvegicus
Analyze
Symbol: Igll2
Name: immunoglobulin lambda likepolypeptide 2
RGD ID: 6484481
Description:
Type: protein-coding
Previously known as: Ig lambda chain V-I region BL2; Ig lambda chain V-VI region EB4; Ig lambda-2 chain V region MOPC 315; IgL; Igl@; Igl@_retired; immunoglobulin lambda chain complex; immunoglobulin lambda light chain; immunoglobulin lambda-1 light chain; immunoglobulin lambda-chain; immunoglobulin lambda-like polypeptide 5-like; immunoglobulin light chain, lambda gene cluster; LOC680329; productively rearranged V-lambda-1; productively rearranged V-lambda-2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21181,554,680 - 81,911,935 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01185,430,330 - 86,092,919 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01189,047,474 - 89,194,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,005,556 - 84,194,944 (+)ENTREZGENERGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1180,345,959 - 80,728,202 (+)NCBICelera
Cytogenetic Map11q23ENTREZGENE
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1428010   PMID:2447492   PMID:18779593  


Genomics

Variants

.
Variants in Igll2
10888 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

Markers in Region
AA850138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21181,911,576 - 81,911,761 (+)MAPPERmRatBN7.2
mRatBN7.21181,945,984 - 81,946,169 (+)MAPPERmRatBN7.2
Rnor_6.01186,092,559 - 86,092,743NCBIRnor6.0
Rnor_5.01189,194,525 - 89,194,709UniSTSRnor5.0
RGSC_v3.41184,194,584 - 84,194,768UniSTSRGSC3.4
RGSC_v3.41184,196,030 - 84,196,214UniSTSRGSC3.4
Celera1180,727,842 - 80,728,026UniSTS
RH 3.4 Map11697.8UniSTS
Cytogenetic Map11q23UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017598191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ394084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ394092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ394093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M17092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M22524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M77360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_017598191   ⟹   XP_017453680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,554,680 - 81,911,935 (+)NCBI
Rnor_6.01185,468,359 - 86,092,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598192   ⟹   XP_017453681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,620,483 - 81,911,935 (+)NCBI
Rnor_6.01185,532,479 - 86,092,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598196   ⟹   XP_017453685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,881,397 - 81,911,935 (+)NCBI
Rnor_6.01186,036,970 - 86,092,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598198   ⟹   XP_017453687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,680,968 - 81,911,935 (+)NCBI
Rnor_6.01185,590,212 - 86,092,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088959   ⟹   XP_038944887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,554,680 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088960   ⟹   XP_038944888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,554,680 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088961   ⟹   XP_038944889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,709,302 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088962   ⟹   XP_038944890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,554,680 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088963   ⟹   XP_038944891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,594,564 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088964   ⟹   XP_038944892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,620,483 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088965   ⟹   XP_038944893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,620,483 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088966   ⟹   XP_038944894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,620,483 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088967   ⟹   XP_038944895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,709,302 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088968   ⟹   XP_038944896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,709,302 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088969   ⟹   XP_038944897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,709,302 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088970   ⟹   XP_038944898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,594,564 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088971   ⟹   XP_038944899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,650,844 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088972   ⟹   XP_038944900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,594,564 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088973   ⟹   XP_038944901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,650,844 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088974   ⟹   XP_038944902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,620,483 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088975   ⟹   XP_038944903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,709,302 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088976   ⟹   XP_038944904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,793,069 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088977   ⟹   XP_038944905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,838,852 - 81,911,935 (+)NCBI
RefSeq Acc Id: XM_039088978   ⟹   XP_038944906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,650,918 - 81,911,935 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_017453680   ⟸   XM_017598191
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453681   ⟸   XM_017598192
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453687   ⟸   XM_017598198
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017453685   ⟸   XM_017598196
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_038944887   ⟸   XM_039088959
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944888   ⟸   XM_039088960
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944890   ⟸   XM_039088962
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944891   ⟸   XM_039088963
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038944898   ⟸   XM_039088970
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038944900   ⟸   XM_039088972
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038944892   ⟸   XM_039088964
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038944893   ⟸   XM_039088965
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038944902   ⟸   XM_039088974
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038944894   ⟸   XM_039088966
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038944899   ⟸   XM_039088971
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038944901   ⟸   XM_039088973
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038944906   ⟸   XM_039088978
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038944889   ⟸   XM_039088961
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944896   ⟸   XM_039088968
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038944895   ⟸   XM_039088967
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038944903   ⟸   XM_039088975
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038944897   ⟸   XM_039088969
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038944904   ⟸   XM_039088976
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038944905   ⟸   XM_039088977
- Peptide Label: isoform X23

Promoters
RGD ID:13698295
Promoter ID:EPDNEW_R8816
Type:single initiation site
Name:AC109901_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01185,633,203 - 85,633,263EPDNEW

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20684 BioCyc
NCBI Gene LOC680329 ENTREZGENE
PhenoGen Igll2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Igll2  immunoglobulin lambda likepolypeptide 2  LOC680329  immunoglobulin lambda-like polypeptide 5-like  Symbol and Name Changed 1299863 APPROVED
2012-06-19 LOC680329  immunoglobulin lambda-like polypeptide 5-like      Symbol and Name status set to provisional 70820 PROVISIONAL