Liph (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 11 | 92,536,724 - 92,586,117 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 11 | 79,032,229 - 79,081,625 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 11 | 79,033,312 - 79,081,625 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 11 | 87,767,801 - 87,815,562 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 11 | 80,421,447 - 80,469,206 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 11 | 79,482,142 - 79,529,905 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 11 | 82,680,167 - 82,732,145 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 11 | 85,808,222 - 85,815,457 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Rnor_5.0 | 11 | 85,770,270 - 85,788,987 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 11 | 77,895,628 - 77,940,437 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | q23 | NCBI | | | | |
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LIPH (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 3 | 185,506,262 - 185,552,588 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 185,506,262 - 185,552,588 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 185,224,050 - 185,270,376 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 186,708,264 - 186,753,063 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 3 | 186,708,294 - 186,753,043 | NCBI | | | | | Celera | 3 | 183,671,086 - 183,716,608 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q27.2 | NCBI | | | | | HuRef | 3 | 182,635,165 - 182,680,037 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 185,188,581 - 185,233,458 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 188,322,024 - 188,368,409 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Liph (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 16 | 21,772,567 - 21,814,408 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 16 | 21,772,567 - 21,814,413 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 16 | 21,953,817 - 21,995,658 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 16 | 21,953,817 - 21,995,663 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 16 | 21,953,890 - 21,995,615 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 16 | 21,868,054 - 21,910,794 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 16 | 22,520,630 - 22,562,761 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | B1 | NCBI | | | | | cM Map | 16 | 12.95 | NCBI | | | | |
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Liph (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955420 | 22,014,961 - 22,052,203 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955420 | 22,015,254 - 22,049,508 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LIPH (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 2 | 183,383,292 - 183,426,940 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 183,388,009 - 183,431,657 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 182,541,666 - 182,586,175 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 191,018,172 - 191,062,502 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 191,018,178 - 191,062,502 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LIPH (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 34 | 18,269,510 - 18,316,664 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 34 | 18,270,070 - 18,316,066 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 34 | 22,345,759 - 22,402,330 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 34 | 18,169,626 - 18,226,433 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 34 | 18,178,666 - 18,225,876 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 34 | 18,205,295 - 18,261,851 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 34 | 18,201,211 - 18,258,007 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 34 | 18,431,011 - 18,487,467 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Liph (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405602 | 118,212,626 - 118,255,245 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936578 | 4,320,937 - 4,345,972 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936578 | 4,304,503 - 4,346,838 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LIPH (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 13 | 123,371,860 - 123,419,434 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 123,372,909 - 123,419,505 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 132,915,031 - 132,957,520 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LIPH (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 15 | 3,872,492 - 3,922,231 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 15 | 3,873,166 - 3,921,209 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666063 | 12,629,696 - 12,685,571 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Liph (Heterocephalus glaber - naked mole-rat) |
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