Ppp1r2 (protein phosphatase 1, regulatory (inhibitor) subunit 2) - Rat Genome Database

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Gene: Ppp1r2 (protein phosphatase 1, regulatory (inhibitor) subunit 2) Rattus norvegicus
Analyze
Symbol: Ppp1r2
Name: protein phosphatase 1, regulatory (inhibitor) subunit 2
RGD ID: 621099
Description: Enables protein domain specific binding activity. Predicted to be involved in glycogen metabolic process and regulation of signal transduction. Located in dendritic spine and growth cone. Orthologous to several human genes including PPP1R2 (protein phosphatase 1 regulatory inhibitor subunit 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: IPP-2; MGC105260; phosphatase inhibitor 2; protein phosphatase 1, regulatory subunit 2; protein phosphatase inhibitor 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Ppp1r2-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Note: There is an assembly problem in the Rnor_6.0 reference genome assembly, and therefore, annotation of this gene is split across NW_007905933.1 and NW_007905934.1 in NCBI's Rattus norvegicus Annotation Release 105. [18 Jun 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,977,634 - 82,999,426 (+)NCBIGRCr8
mRatBN7.21169,472,676 - 69,494,468 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,472,555 - 69,494,463 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,309,669 - 78,331,462 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,962,762 - 70,986,263 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,998,758 - 70,020,550 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01172,748,789 - 73,034,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,022,063 - 73,034,682 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,823,211 - 75,823,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01176,095,398 - 76,108,035 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41171,319,294 - 71,342,716 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11171,376,882 - 71,400,305 (+)NCBI
Celera1168,892,093 - 68,913,866 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Molecular cloning of the cDNA for rat phosphatase inhibitor-2 and its wide gene expression in the central nervous system. Sakagami H and Kondo H, J Chem Neuroanat 1995 May;8(4):259-66.
7. Neurabins recruit protein phosphatase-1 and inhibitor-2 to the actin cytoskeleton. Terry-Lorenzo RT, etal., J Biol Chem 2002 Nov 29;277(48):46535-43. Epub 2002 Sep 21.
Additional References at PubMed
PMID:12477932   PMID:23825423  


Genomics

Comparative Map Data
Ppp1r2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,977,634 - 82,999,426 (+)NCBIGRCr8
mRatBN7.21169,472,676 - 69,494,468 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,472,555 - 69,494,463 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,309,669 - 78,331,462 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,962,762 - 70,986,263 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,998,758 - 70,020,550 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01172,748,789 - 73,034,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,022,063 - 73,034,682 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,823,211 - 75,823,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01176,095,398 - 76,108,035 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41171,319,294 - 71,342,716 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11171,376,882 - 71,400,305 (+)NCBI
Celera1168,892,093 - 68,913,866 (+)NCBICelera
Cytogenetic Map11q22NCBI
PPP1R2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,514,428 - 195,543,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3195,514,428 - 195,543,386 (-)EnsemblGRCh38hg38GRCh38
GRCh373195,241,224 - 195,270,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,722,513 - 196,751,362 (-)NCBINCBI36Build 36hg18NCBI36
Celera3193,649,379 - 193,678,278 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3192,611,567 - 192,640,691 (-)NCBIHuRef
CHM1_13195,204,104 - 195,233,114 (-)NCBICHM1_1
T2T-CHM13v2.03198,221,391 - 198,250,329 (-)NCBIT2T-CHM13v2.0
Ppp1r2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,070,359 - 31,094,095 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,070,355 - 31,094,095 (-)EnsemblGRCm39 Ensembl
GRCm381631,251,541 - 31,275,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,251,537 - 31,275,277 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,251,627 - 31,275,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361631,171,288 - 31,195,024 (-)NCBIMGSCv36mm8
Celera1631,759,323 - 31,783,001 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
Ppp1r2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542013,592,508 - 13,613,165 (+)NCBIChiLan1.0ChiLan1.0
PPP1R2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22193,426,366 - 193,453,449 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13193,431,086 - 193,460,360 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03192,797,787 - 192,826,706 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,097,226 - 203,126,167 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,097,226 - 203,126,167 (-)Ensemblpanpan1.1panPan2
PPP1R2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13330,525,906 - 30,555,415 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3330,525,906 - 30,555,415 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3330,551,942 - 30,581,442 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03330,778,041 - 30,807,809 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3330,778,031 - 30,807,794 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13330,572,596 - 30,602,272 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03330,609,224 - 30,638,729 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,230,994 - 31,261,224 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602143,699,565 - 143,712,480 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936833225,330 - 238,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113132,460,186 - 132,489,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,032,745 - 142,060,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,559,149 - 89,585,767 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1589,555,566 - 89,586,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604163,321,183 - 63,349,993 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473062,576,490 - 62,603,993 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp1r2
88 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:83
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000002361
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat

Markers in Region
D16Mit229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,483,683 - 69,483,788 (+)MAPPERmRatBN7.2
Rnor_6.01173,023,900 - 73,024,004NCBIRnor6.0
Rnor_5.01176,097,233 - 76,097,337UniSTSRnor5.0
RGSC_v3.41171,331,035 - 71,331,139UniSTSRGSC3.4
Celera1168,903,090 - 68,903,194UniSTS
Cytogenetic Map11q22UniSTS
AA858773  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,494,266 - 69,494,473 (+)MAPPERmRatBN7.2
mRatBN7.2353,375,852 - 53,376,043 (+)MAPPERmRatBN7.2
Rnor_6.01173,034,482 - 73,034,688NCBIRnor6.0
Rnor_5.01176,107,834 - 76,108,040UniSTSRnor5.0
RGSC_v3.41171,342,515 - 71,342,721UniSTSRGSC3.4
Celera1168,913,665 - 68,913,871UniSTS
RH 3.4 Map11554.33UniSTS
Cytogenetic Map11q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002361   ⟹   ENSRNOP00000002361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1169,472,555 - 69,494,463 (+)Ensembl
Rnor_6.0 Ensembl1173,022,063 - 73,034,682 (+)Ensembl
RefSeq Acc Id: NM_138823   ⟹   NP_620178
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81182,977,634 - 82,999,426 (+)NCBI
mRatBN7.21169,472,676 - 69,494,468 (+)NCBI
Rnor_6.01172,748,789 - 73,034,683 (+)NCBI
Rnor_5.01175,823,211 - 75,823,466 (+)NCBI
Rnor_5.01176,095,398 - 76,108,035 (+)NCBI
RGSC_v3.41171,319,294 - 71,342,716 (+)RGD
Celera1168,892,093 - 68,913,866 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_620178   ⟸   NM_138823
- UniProtKB: Q56A32 (UniProtKB/Swiss-Prot),   P50411 (UniProtKB/Swiss-Prot),   A6IRX4 (UniProtKB/TrEMBL),   A6IRX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002361   ⟸   ENSRNOT00000002361

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P50411-F1-model_v2 AlphaFold P50411 1-205 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621099 AgrOrtholog
BioCyc Gene G2FUF-21052 BioCyc
Ensembl Genes ENSRNOG00000001733 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055016689 UniProtKB/Swiss-Prot
  ENSRNOG00060017341 UniProtKB/Swiss-Prot
  ENSRNOG00065019393 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002361 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000002361.7 UniProtKB/Swiss-Prot
  ENSRNOT00055028355 UniProtKB/Swiss-Prot
  ENSRNOT00060029616 UniProtKB/Swiss-Prot
  ENSRNOT00065032652 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.1050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7313160 IMAGE-MGC_LOAD
InterPro PPI-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192361 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105260 IMAGE-MGC_LOAD
NCBI Gene 192361 ENTREZGENE
PANTHER PROTEIN PHOSPHATASE INHIBITOR 2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12398 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IPP-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppp1r2 PhenoGen
RatGTEx ENSRNOG00000001733 RatGTEx
  ENSRNOG00055016689 RatGTEx
  ENSRNOG00060017341 RatGTEx
  ENSRNOG00065019393 RatGTEx
UniProt A0A0H2UHA0_RAT UniProtKB/TrEMBL
  A6IRX4 ENTREZGENE, UniProtKB/TrEMBL
  A6IRX5 ENTREZGENE, UniProtKB/TrEMBL
  IPP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q56A32 ENTREZGENE
UniProt Secondary Q56A32 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Ppp1r2  protein phosphatase 1, regulatory (inhibitor) subunit 2      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Ppp1r2  protein phosphatase 1, regulatory (inhibitor) subunit 2      Symbol and Name status set to provisional 70820 PROVISIONAL