| 2322462 | LOC100360289 | hypothetical LOC100360289 | 11 | 77211173 | 77370144 | Rat |
| 1590724 | LOC679233 | similar to heterogeneous nuclear ribonucleoprotein H2 | 11 | 77437075 | 77461767 | Rat |
| 1306226 | Tprg1 | tumor protein p63 regulated 1 | 11 | 77477085 | 77601486 | Rat |
| 1561572 | RGD1561572 | similar to splicing factor 3a, subunit 2 | 11 | 77932097 | 77932984 | Rat |
| 1310535 | Lpp | LIM domain containing preferred translocation partner in lipoma | 11 | 77963582 | 78416872 | Rat |
| 1593403 | LOC690668 | similar to A-kinase anchor protein 5 (A-kinase anchor protein 150 kDa) (AKAP 150) (cAMP-dependent protein kinase regulatory subunit II high affinity binding protein) (P150) | 11 | 78480803 | 78481645 | Rat |
| 1563535 | RGD1563535 | similar to Myosin light polypeptide 6 (Myosin light chain alkali 3) | 11 | 78564554 | 78564924 | Rat |
| 1309345 | Bcl6 | B-cell CLL/lymphoma 6 | 11 | 79006123 | 79030555 | Rat |
| 1565722 | Rtp2 | receptor (chemosensory) transporter protein 2 | 11 | 79092578 | 79098266 | Rat |
| 3761 | Sst | somatostatin | 11 | 79125031 | 79126216 | Rat |
| 1564585 | RGD1564585 | similar to golli-interacting protein | 11 | 79315177 | 79322955 | Rat |
| 1590995 | LOC690837 | hypothetical protein LOC690837 | 11 | 79371635 | 79377466 | Rat |
| 1306974 | Rtp4 | receptor (chemosensory) transporter protein 4 | 11 | 79433553 | 79445410 | Rat |
| 620213 | Masp1 | mannan-binding lectin serine peptidase 1 | 11 | 79532504 | 79602755 | Rat |
| 1560980 | Rtp1 | receptor (chemosensory) transporter protein 1 | 11 | 79620059 | 79622575 | Rat |
| 1589782 | LOC288005 | similar to 60S ribosomal protein L21 | 11 | 79674797 | 79675257 | Rat |
| 1584956 | LOC363813 | similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Liver copper-binding protein) (CUBP) | 11 | 79676913 | 79681120 | Rat |
| 2319156 | LOC100361924 | microtubule associated serine/threonine kinase 2-like | 11 | 79690063 | 79698874 | Rat |
| 3676 | St6gal1 | ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 | 11 | 79723269 | 79765645 | Rat |
| 628748 | Adipoq | adiponectin, C1Q and collagen domain containing | 11 | 79908291 | 79911065 | Rat |
| 2319108 | LOC100361972 | mCG131663-like | 11 | 79914524 | 79915356 | Rat |
| 1310142 | Rfc4 | replication factor C (activator 1) 4 | 11 | 79935273 | 79950589 | Rat |
| 1309225 | Eif4a2 | eukaryotic translation initiation factor 4A2 | 11 | 79950592 | 79957185 | Rat |
| 1583711 | LOC501783 | similar to cyclin B1 interacting protein 1 | 11 | 79999571 | 80000444 | Rat |
| 1359376 | Kng1l1 | kininogen 1-like 1 | 11 | 80008752 | 80031601 | Rat |
| 1589871 | LOC690907 | similar to protein kinase, AMP-activated, alpha 1 catalytic subunit | 11 | 80078504 | 80080720 | Rat |
| 1584955 | LOC363815 | hypothetical LOC363815 | 11 | 80082649 | 80093146 | Rat |
| 2980 | Kng1 | kininogen 1 | 11 | 80109499 | 80131887 | Rat |
| 1589859 | LOC690920 | similar to cyclin B1 interacting protein 1 | 11 | 80139721 | 80140593 | Rat |
| 2318575 | LOC100362210 | histidine-rich glycoprotein-like | 11 | 80230659 | 80243428 | Rat |
| 619808 | Hrg | histidine-rich glycoprotein | 11 | 80248578 | 80264179 | Rat |
| 69293 | Fetub | fetuin B | 11 | 80276852 | 80285039 | Rat |
| 1583710 | LOC501785 | similar to ribosomal protein L31 | 11 | 80307546 | 80320398 | Rat |
| 2075 | Ahsg | alpha-2-HS-glycoprotein | 11 | 80330615 | 80336658 | Rat |
| 1307373 | Dnajb11 | DnaJ (Hsp40) homolog, subfamily B, member 11 | 11 | 80360406 | 80376870 | Rat |
| 1309604 | Tbccd1 | TBCC domain containing 1 | 11 | 80387000 | 80415192 | Rat |
| 1587483 | Crygs | crystallin, gamma S | 11 | 80417632 | 80437802 | Rat |
| 2318335 | LOC100362351 | hCG2040565-like | 11 | 80554126 | 80554583 | Rat |
| 1589813 | LOC690970 | hypothetical protein LOC690970 | 11 | 80612334 | 80612886 | Rat |
| 2499 | Dgkg | diacylglycerol kinase, gamma | 11 | 80623184 | 80814779 | Rat |
| 1309590 | Etv5 | ets variant 5 | 11 | 80846286 | 80904013 | Rat |
| 1589789 | LOC690996 | hypothetical protein LOC690996 | 11 | 80846464 | 80846913 | Rat |
| 1588683 | LOC691006 | similar to proteaseome (prosome, macropain) 28 subunit, 3 | 11 | 81011299 | 81012192 | Rat |
| 1559972 | RGD1559972 | similar to ribosomal protein L27a | 11 | 81018885 | 81019364 | Rat |
| 619886 | Tra2b | transformer 2 beta homolog (Drosophila) | 11 | 81026729 | 81044936 | Rat |
| 2321746 | LOC100360611 | ribosomal protein L21-like | 11 | 81063505 | 81063987 | Rat |
| 1305614 | Igf2bp2 | insulin-like growth factor 2 mRNA binding protein 2 | 11 | 81115320 | 81216170 | Rat |
| 708378 | Senp2 | Sumo1/sentrin/SMT3 specific peptidase 2 | 11 | 81225720 | 81259934 | Rat |
| 1561227 | Map3k13 | mitogen-activated protein kinase kinase kinase 13 | 11 | 81327515 | 81467415 | Rat |
| 1559917 | RGD1559917 | similar to SMT3 suppressor of mif two 3 homolog 2 | 11 | 81379789 | 81380115 | Rat |
| 621441 | Ehhadh | enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase | 11 | 81474161 | 81507645 | Rat |
| 1562339 | RGD1562339 | RGD1562339 | 11 | 81578580 | 81625179 | Rat |
| 1309443 | Vps8 | vacuolar protein sorting 8 homolog (S. cerevisiae) | 11 | 81635546 | 81866781 | Rat |
| 2321725 | LOC100360632 | bis(5-nucleosyl)-tetraphosphatase-like | 11 | 81983638 | 81984059 | Rat |
| 1305602 | Ephb3 | Eph receptor B3 | 11 | 82027632 | 82046332 | Rat |
| 1585959 | LOC679630 | similar to eukaryotic translation initiation factor 4, gamma 1 isoform a | 11 | 82077924 | 82150903 | Rat |
| 2320891 | LOC100361069 | hypothetical protein LOC100361069 | 11 | 82159412 | 82159573 | Rat |
| 1560559 | RGD1560559 | similar to RIKEN cDNA 2310042E22 | 11 | 82188243 | 82189394 | Rat |
| 1585930 | LOC679659 | similar to TIP41, TOR signalling pathway regulator-like | 11 | 82335308 | 82341664 | Rat |
| 1563956 | RGD1563956 | similar to 60S ribosomal protein L12 | 11 | 82399041 | 82399514 | Rat |
| 620181 | Chrd | chordin | 11 | 82401701 | 82410401 | Rat |
| 621438 | Thpo | thrombopoietin | 11 | 82412552 | 82417807 | Rat |
| 1561203 | Polr2h | polymerase (RNA) II (DNA directed) polypeptide H | 11 | 82421657 | 82426105 | Rat |
| 2361 | Clcn2 | chloride channel, voltage-sensitive 2 | 11 | 82427792 | 82441293 | Rat |
| 2322069 | Fam131a | family with sequence similarity 131, member A | 11 | 82441211 | 82449496 | Rat |
| 1306144 | Eif4g1 | eukaryotic translation initiation factor 4 gamma, 1 | 11 | 82451555 | 82471735 | Rat |
| 1305752 | Psmd2 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 | 11 | 82478177 | 82488804 | Rat |
| 1303039 | Ece2 | endothelin-converting enzyme 2 | 11 | 82492975 | 82507876 | Rat |
| 1306004 | Alg3 | ALG3, alpha-1,3- mannosyltransferase | 11 | 82507540 | 82535341 | Rat |
| 708411 | Camk2n2 | calcium/calmodulin-dependent protein kinase II inhibitor 2 | 11 | 82519331 | 82519584 | Rat |
| 1564491 | Vwa5b2 | von Willebrand factor A domain containing 5B2 | 11 | 82535711 | 82552800 | Rat |
| 1310468 | Abcf3 | ATP-binding cassette, subfamily F (GCN20), member 3 | 11 | 82570495 | 82582228 | Rat |
| 620135 | Ap2m1 | adaptor-related protein complex 2, mu 1 subunit | 11 | 82585474 | 82591832 | Rat |
| 1308834 | Dvl3 | dishevelled, dsh homolog 3 (Drosophila) | 11 | 82597654 | 82622175 | Rat |
| 708380 | Eif2b5 | eukaryotic translation initiation factor 2B, subunit 5 epsilon | 11 | 82634006 | 82643992 | Rat |
| 2318744 | Rps15al2 | ribosomal protein S15A-like 2 | 11 | 82648253 | 82648645 | Rat |
| 1587359 | LOC303810 | similar to ribosomal protein L15 | 11 | 82674017 | 82674627 | Rat |
| 1598124 | LOC679946 | similar to 40S ribosomal protein S7 (S8) | 11 | 82677586 | 82678200 | Rat |
| 70913 | Abcc5 | ATP-binding cassette, subfamily C (CFTR/MRP), member 5 | 11 | 82714334 | 82809354 | Rat |
| 1306191 | Parl | presenilin associated, rhomboid-like | 11 | 82836666 | 82864977 | Rat |
| 1596882 | LOC680005 | similar to 60S ribosomal protein L7a | 11 | 82935443 | 82936233 | Rat |
| 1560102 | Map6d1 | MAP6 domain containing 1 | 11 | 82981697 | 82987926 | Rat |
| 1566176 | Yeats2 | YEATS domain containing 2 | 11 | 82990683 | 83064723 | Rat |
| 727971 | Klhl24 | kelch-like family member 24 | 11 | 83094560 | 83126617 | Rat |
| 1564731 | RGD1564731 | similar to 60S ribosomal protein L7a | 11 | 83139356 | 83181612 | Rat |
| 1307521 | Klhl6 | kelch-like family member 6 | 11 | 83221776 | 83260528 | Rat |
| 70955 | B3gnt5 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 | 11 | 83396028 | 83408584 | Rat |
| 1307928 | Lamp3 | lysosomal-associated membrane protein 3 | 11 | 83449326 | 83476622 | Rat |
| 1333751 | Olr1565 | olfactory receptor 1565 | 11 | 83502786 | 83503730 | Rat |
| 1584953 | LOC363825 | similar to heat shock protein 8 | 11 | 83512883 | 83514811 | Rat |
| 1333622 | Olr1566 | olfactory receptor 1566 | 11 | 83540231 | 83541172 | Rat |
| 1333712 | Olr1567 | olfactory receptor 1567 | 11 | 83618459 | 83619397 | Rat |
| 1334380 | Olr1568 | olfactory receptor 1568 | 11 | 83643287 | 83644225 | Rat |
| 1333362 | Olr1569 | olfactory receptor 1569 | 11 | 83668694 | 83669632 | Rat |
| 1333258 | Olr1570 | olfactory receptor 1570 | 11 | 83757848 | 83758789 | Rat |
| 1562349 | LOC363827 | similar to productively rearranged V-lambda-2 | 11 | 83827089 | 83827629 | Rat |
| 1642428 | Igl | immunoglobulin lambda chain complex | 11 | 83926849 | 83975916 | Rat |
| 6484455 | LOC680311 | Ig lambda chain V-VI region SUT-like | 11 | 83989857 | 84003428 | Rat |
| 6484481 | LOC680329 | immunoglobulin lambda-like polypeptide 5-like | 11 | 84005556 | 84194944 | Rat |
| 2319568 | LOC100361706 | lambda-chain C1-region-like | 11 | 84198234 | 84199868 | Rat |
| 2318135 | LOC100362453 | serine/threonine-protein phosphatase 2A catalytic subunit alpha-like | 11 | 84270087 | 84271016 | Rat |
| 1592942 | LOC680387 | similar to CG13990-PA | 11 | 84296854 | 84303746 | Rat |
| 621763 | Sept5 | septin 5 | 11 | 84365193 | 84370972 | Rat |
| 621050 | Gp1bb | glycoprotein Ib (platelet), beta polypeptide | 11 | 84369795 | 84370972 | Rat |
| 1592932 | LOC680397 | similar to 60S ribosomal protein L9 | 11 | 84391849 | 84392426 | Rat |
| 1307734 | Tbx1 | T-box 1 | 11 | 84400980 | 84410631 | Rat |
| 1594165 | Gnb1l | guanine nucleotide binding protein (G protein), beta polypeptide 1-like | 11 | 84427112 | 84489259 | Rat |
| 61960 | Txnrd2 | thioredoxin reductase 2 | 11 | 84513361 | 84561673 | Rat |
| 2379 | Comt | catechol-O-methyltransferase | 11 | 84561591 | 84581713 | Rat |
| 1306655 | Arvcf | armadillo repeat gene deleted in velo-cardio-facial syndrome | 11 | 84582208 | 84639874 | Rat |
| 1591720 | LOC680480 | similar to myosin heavy chain Myr 8 | 11 | 84605828 | 84606574 | Rat |
| 1310348 | Tango2 | transport and golgi organization 2 homolog (Drosophila) | 11 | 84643644 | 84686639 | Rat |
| 1306365 | Dgcr8 | DiGeorge syndrome critical region gene 8 | 11 | 84698795 | 84731041 | Rat |
| 1310418 | Trmt2a | tRNA methyltransferase 2 homolog A (S. cerevisiae) | 11 | 84731490 | 84736099 | Rat |
| 1310521 | Ranbp1 | RAN binding protein 1 | 11 | 84736402 | 84744635 | Rat |
| 1308875 | Zdhhc8 | zinc finger, DHHC-type containing 8 | 11 | 84748939 | 84762305 | Rat |
| 620810 | Rtn4r | reticulon 4 receptor | 11 | 84839082 | 84863508 | Rat |
| 2319374 | LOC100361800 | hypothetical protein LOC100361800 | 11 | 84840163 | 84863749 | Rat |
| 724554 | Iddm17 | Insulin dependent diabetes mellitus QTL 17 | | .001 | Glucose level | | 11 | 19445919 | 87759784 | Rat |
| 724563 | Uae10 | Urinary albumin excretion QTL 10 | 6 | | Renal function | urine albumin level | 11 | 28213024 | 84841212 | Rat |
| 1300110 | Stl7 | Serum triglyceride level QTL 7 | 4.64 | | Lipid level | salt-loaded triglyceride | 11 | 29744366 | 84560241 | Rat |
| 2298551 | Neuinf10 | Neuroinflammation QTL 10 | 3.7 | | Neuroinflammation | | 11 | 31988113 | 81091531 | Rat |
| 70180 | BpQTLcluster10 | Blood pressure QTL cluster 10 | 3.19 | | Blood pressure | | 11 | 35910590 | 80910590 | Rat |
| 1300135 | Rf19 | Renal function QTL 19 | 3.38 | | Renal function | salt-loaded creatinine clearance | 11 | 41711171 | 84560241 | Rat |
| 2312566 | Glom20 | Glomerulus QTL 20 | 3.6 | .001 | Renal pathology | | 11 | 45232526 | 84560241 | Rat |
| 4889859 | Pur28 | Proteinuria QTL 28 | 19.5 | .001 | Renal function | urine protein level | 11 | 46499941 | 77591279 | Rat |
| 724561 | Plsm4 | Polydactyly-luxate syndrome (PLS) morphotypes QTL 4 | | .0003 | Limb morphology | front feet phalanges number | 11 | 56625623 | 87759784 | Rat |
| 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | .0001 | Bone structure | | 10 | 61504312 | 87759784 | Rat |
| 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | .0001 | Bone structure | | 10 | 61504312 | 87759784 | Rat |
| 631506 | Bp104 | Blood pressure QTL 104 | 2.8 | | Blood pressure | systolic | 11 | 61504483 | 84560085 | Rat |
| 70208 | Niddm22 | Non-insulin dependent diabetes mellitus QTL 22 | 3.61 | | Glucose level | fasting | 11 | 61504483 | 84560092 | Rat |
| 1549848 | Bvd6 | Brain ventricular dilatation QTL 6 | 3.1 | .0001 | Head/brain development | brain ventricular dilatation | 11 | 67930910 | 87759784 | Rat |
| 1354593 | Stl12 | Serum triglyceride level QTL 12 | 3.36 | | Lipid level | triglyceride | 11 | 68234781 | 87759784 | Rat |
| 1354656 | Bvd3 | Brain ventricular dilatation QTL 3 | 3.64 | .001 | Head/brain development | brain ventricular dilatation | 11 | 77341660 | 84841212 | Rat |
| 2302043 | Pia27 | Pristane induced arthritis QTL 27 | 18.6 | .001 | Joint/bone inflammation | pristane induced | 11 | 84560085 | 85432136 | Rat |