D18Rat107 Marker Search Result - Rat Genome Database

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General

Marker: D18Rat107

Symbol:

D18Rat107

Previously known as:

oxsts9917; R0223-C05;

RGD ID:

40076

Expected Size:

158 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	11,693,310 - 11,693,468 (+)	Marker Load Pipeline
mRatBN7.2	18	11,418,236 - 11,418,394 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	11,794,083 - 11,794,240	NCBI	Rnor6.0
Rnor_5.0	18	11,593,225 - 11,593,382	UniSTS	Rnor5.0
RH 2.0 Map	18	762.1	RGD
SHRSP x BN Map	18	5.85	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GATCTTCATCATGCACAGCAG
Reverse Primer	AGCCCATTGTGTCAATGATG

Template	ATGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCTAGCGACTTCCCACTAGTC TGGTAGGAAGGATAATTTCCACTAAGAAAACAAAAGCCCATTGTGTCAATGATGATGTCTTACA GCCTTGAGCAAAAGCTTGTACAAAGAGGAACTGATAGTGGTGTGTGTGTGTGTGCGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTAGTGTATGTACTGCTGTGCATGATGAAGATCAGAAGAAG ATAGATGTTGGATATTCTACTTTATCAAATTCTTCCTTATTCCCTACAGACAGAATTTTCACTG AACCTGGAGTTAGGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGA AATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGG GTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGG AAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTNCGTATTG GGCGCAGGTGGTTTTTCTTTCACAGTGAGACGGGCAACACT

Strain Variation

Strain, Expected Size(s)

ACI/N	152
AVN/Orl	154
BBDP/Rhw	154
BBDR/Rhw	154
BC/CpbU	152
BDIX/Han	152
BDVII/Cub	152
BN-Lx/Cub	160
BN/SsNHsd	160
BP/Cub	152
BUF/Pit	160
COP/OlaHsd	152
DA/PitN	152

DON/Melb	154
F344/Pit	154
FHH/Eur	152
GH/Omr	154
GK/KyoSwe	152
IS/Kyo	152
LE/Mol	152
LEW/Pit	154
LH/Mav	152
LN/Mav	152
LOU/CHan	154
M520/N	154
MHS/Gib	154

MNR/N	154
MNRA/N	154
MNS/Gib	160
MR/Pit	154
NEDH/K	154
NP9	154
ODU/N	152
OKA/Wsl	152
OM/Ztm	160
P5C	160
PVG/Pit	154
SD/Rij	154
SHR/OlaHsd	152

SHRSP/Riv	152
SR/Jr	154
SS/Jr	154
WAG/RijKyo	154
WF/Pit	154
WIST/Nhg	152
WKY/OlaHsd	152
WN/N	152
WTC/Kyo	154

Region

Nucleotide Sequences

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	6791251	12205285	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	6791251	12205285	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	6791251	12205285	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	6791251	12205285	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	6791251	12205285	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat

Additional Information

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Marker: D18Rat107