D2Rat189 Marker Search Result - Rat Genome Database

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Marker: D2Rat189

Symbol: D2Rat189
Previously known as: oxsts10452; R0220-A07; 
RGD ID: 40024
Expected Size: 175 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2217,319,606 - 17,319,743 (+)MAPPERmRatBN7.2
Rnor_6.0214,621,328 - 14,621,464NCBIRnor6.0
Rnor_6.0214,564,017 - 14,564,153NCBIRnor6.0
Rnor_5.0214,416,543 - 14,416,679UniSTSRnor5.0
Rnor_5.0214,474,287 - 14,474,423UniSTSRnor5.0
RGSC_v3.4215,761,666 - 15,761,803RGDRGSC3.4
RGSC_v3.4215,761,667 - 15,761,803UniSTSRGSC3.4
RGSC_v3.1215,682,035 - 15,682,172RGD
Celera213,546,330 - 13,546,466UniSTS
SHRSP x BN Map21.1199RGD
SHRSP x BN Map21.1199UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGGGGAAGGAAGGATTTTG
Reverse Primer TGTGCAACTTTTTGTTTGTTTG
 
Template 
CATGCCTGCAGGTGCGACTCTAGAGGATCCCCCTATGCATCTGTTATATATGTGTAGGGAGTCT
AGGTTCATCCTGATTGGTTCAGTCCCAGAGAGTTCTTATGGAACCAGGTTAGTTAATTCTGTGC
AACTTTTTGTTTGTTTGTTTTGCTTTGTTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGGGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTT
TCCTTGACCTCTCTTGTTCCTTCAAAATCCTTCCTTCCCCTCTTCTGAAAAATCCTCTGAGGGG
TACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCAC
AATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAGTGAGTGAGC
TAACTCACATTAATGCGTTGCGCTCACTGCCGCTTTCCATCGGGAAACTGTCGTGCACTGCATA
ATG

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat


Additional Information