D10Rat26 Marker Search Result - Rat Genome Database

General

Marker: D10Rat26

Symbol:

D10Rat26

Previously known as:

R0034-D12; oxsts5954; R034-D12;

RGD ID:

36319

Expected Size:

164 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source
Celera	10	72,105,962 - 72,106,120	UniSTS
RH 2.0 Map	10	755.6	RGD
SHRSP x BN Map	10	51.03	RGD
FHH x ACI Map	10	59.1999	RGD
Cytogenetic Map	10	q26	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Pia15 Cm33 Hrtrt21 Kidm21 Aia19 Aia6 Aia20 Aia7
Genes: Msi2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	CGCGCATACCTTATACACCA
Reverse Primer	CCTTGCATTGTTCTCCCTGT

Strain Variation

Strain, Expected Size(s)

ACI/N	161
AVN/Orl	161
BBDP/Rhw	169
BBDR/Rhw	169
BC/CpbU	161
BDIX/Han	163
BDVII/Cub	163
BN-Lx/Cub	161
BN/SsNHsd	161
BP/Cub	169
BUF/Pit	161
COP/OlaHsd	169

DA/PitN	161
DON/Melb	161
F344/Pit	161
FHH/Eur	169
GH/Omr	173
GK/KyoSwe	171
IS/Kyo	161
LE/Mol	161
LEW/Pit	169
LH/Mav	161
LN/Mav	173
LOU/CHan	169

M520/N	161
MHS/Gib	169
MNR/N	161
MNRA/N	161
MNS/Gib	169
MR/Pit	161
NEDH/K	163
NP9	169
ODU/N	171
OKA/Wsl	171
OM/Ztm	169
P5C	169

PVG/Pit	161
SD/Rij	161
SR/Jr	163
SS/Jr	161
WAG/RijKyo	161
WF/Pit	161
WIST/Nhg	161
WKY/OlaHsd	171
WN/N	169
WTC/Kyo	171

Region

Nucleotide Sequences


GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100303088	UniSTS
	100381218	UniSTS
	100381225	UniSTS
	100381228	UniSTS
	100381229	UniSTS
	360596	UniSTS
	387404	UniSTS
	544480	UniSTS
	544501	UniSTS
UniSTS	118170	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D10Rat26