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ONTOLOGY REPORT - ANNOTATIONS

Term:forebrain regionalization
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Accession:GO:0021871 term browser browse the term
Definition:The regionalization process resulting in the creation of areas within the forebrain that will direct the behavior of cell migration in differentiation as the forebrain develops.


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forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2443342 (PMID:10529425)		 UniProt
RGD		 PMID:10529425 GO_REF:0000024 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856621|MGI:99783 (PMID:10529425)		 Ensembl
RGD		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:3775846|MGI:3840448 (PMID:24528677) RGD PMID:24528677 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24531968)		 Ensembl
RGD		 PMID:24531968 GO_REF:0000107 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:23431145) RGD PMID:23431145 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO MGI:5527461 (PMID:22923088), (PMID:23056351) RGD PMID:22923088 PMID:23056351 NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:95388 (PMID:15147765) RGD PMID:15147765 NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858|MGI:95387 (PMID:12764040), (PMID:15147765) RGD PMID:12764040 PMID:15147765 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 ISO (PMID:30186101)
MGI:2176173|MGI:3802572 (PMID:23431145)		 RGD PMID:23431145 PMID:30186101 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:3521756 (PMID:17828260) RGD PMID:17828260 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:30186101)
MGI:1856155 (PMID:12764040), (PMID:23431145)		 Ensembl
RGD		 PMID:12764040 PMID:23431145 PMID:30186101 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Tra2b transformer 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176173|MGI:4450919 (PMID:24586484)		 Ensembl
RGD		 PMID:24586484 GO_REF:0000107 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO MGI:1859823 (PMID:16971467) RGD PMID:16971467 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:1920441 (PMID:16971467) RGD PMID:16971467 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:2450901|MGI:98953 (PMID:18094027) RGD PMID:18094027 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:102764 (PMID:18094027) RGD PMID:18094027 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1857843|MGI:2150348 (PMID:16613831) RGD PMID:16613831 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:10625551) RGD PMID:10625551 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:11060228), (PMID:11124115), (PMID:18701439) RGD PMID:11060228 PMID:11124115 PMID:18701439 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494 (PMID:10393115), (PMID:11163262), (PMID:11830575)		 Ensembl
RGD		 PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856155|MGI:1856158 (PMID:11050125), (PMID:11124115), (PMID:18701439), (PMID:24528677)		 Ensembl
RGD		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (PMID:19732765) RGD PMID:19732765 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96785 (PMID:11719201)		 Ensembl
RGD		 PMID:11719201 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96785 (PMID:11719201), (PMID:16855091)		 Ensembl
RGD		 PMID:11719201 PMID:16855091 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:18701439) RGD PMID:18701439 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1890208|MGI:88177|MGI:88180 (PMID:11719201)		 Ensembl
RGD		 PMID:11719201 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753|MGI:3665330 (PMID:26166575) RGD PMID:26166575 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155 (PMID:18701439) RGD PMID:18701439 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IMP
IEA
ISO		 GO_REF:0000107
MGI:1857796 (PMID:11060228)		 Ensembl
RGD		 PMID:11060228 PMID:9811591 GO_REF:0000107, RGD:2306311 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18694563) RGD PMID:18694563 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    multicellular organismal process 8906
      pattern specification process 500
        regionalization 454
          forebrain regionalization 27
            forebrain anterior/posterior pattern specification 4
            forebrain dorsal/ventral pattern formation 7
            telencephalon regionalization + 16
Path 2
Term Annotations click to browse term
  biological_process 20076
    developmental process 7070
      anatomical structure development 6573
        multicellular organism development 5299
          system development 4584
            nervous system development 2848
              central nervous system development 1212
                brain development 905
                  forebrain development 559
                    forebrain regionalization 27
                      forebrain anterior/posterior pattern specification 4
                      forebrain dorsal/ventral pattern formation 7
                      telencephalon regionalization + 16
paths to the root