ONTOLOGY REPORT - ANNOTATIONS
Term: rough endoplasmic reticulum
Accession: GO:0005791
browse the term
Definition: The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.
Synonyms: exact_synonym: RER; rough ER
xref: NIF_Subcellular:sao1881364067; Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum
G
CA4
carbonic anhydrase 4
located_in
IDA
(PMID:17409381)
DFLAT
PMID:17409381
NCBI chr17:60,149,973...60,179,021
Ensembl chr17:60,149,942...60,170,899
G
CCDC47
coiled-coil domain containing 47
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:63,745,255...63,773,597
Ensembl chr17:63,745,255...63,776,351
G
CDKAL1
CDK5 regulatory subunit associated protein 1 like 1
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:20,534,457...21,232,404
Ensembl chr 6:20,534,457...21,232,404
G
CKAP4
cytoskeleton associated protein 4
located_in is_active_in
IDA IBA IEA
(PMID:24454821)
UniProt GO_Central TreeGrafter
PMID:24454821
GO_REF:0000033 GO_REF:0000118
NCBI chr12:106,237,881...106,248,020
Ensembl chr12:106,237,881...106,304,279
G
EPHA5
EPH receptor A5
located_in
IDA
(PMID:10375373)
UniProt
PMID:10375373
NCBI chr 4:65,319,567...65,670,489
Ensembl chr 4:65,319,563...65,670,495
G
F12
coagulation factor XII
located_in is_active_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 5:177,402,141...177,409,564
Ensembl chr 5:177,402,133...177,416,583
G
FKRP
fukutin related protein
located_in
IDA IEA
(PMID:15213246)
UniProt
PMID:15213246
GO_REF:0000044
NCBI chr19:46,744,760...46,758,575
Ensembl chr19:46,746,046...46,776,988
G
HCRT
hypocretin neuropeptide precursor
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr17:42,184,060...42,185,452
Ensembl chr17:42,184,060...42,185,452
G
HGFAC
HGF activator
located_in is_active_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:3,441,005...3,449,486
Ensembl chr 4:3,441,968...3,449,486
G
HM13
histocompatibility minor 13
located_in
IDA
(PMID:15998642), (PMID:16829952)
UniProt
PMID:15998642 PMID:16829952
NCBI chr20:31,514,442...31,569,543
Ensembl chr20:31,514,428...31,577,923
G
LIN28A
lin-28 homolog A
located_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000044 GO_REF:0000107
NCBI chr 1:26,410,817...26,429,728
Ensembl chr 1:26,410,817...26,429,728
G
LRAT
lecithin retinol acyltransferase
located_in is_active_in
IEA IBA ISS
Ensembl GO_Central UniProt
GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107
NCBI chr 4:154,740,838...154,753,120
Ensembl chr 4:154,626,945...154,753,120
G
MYC
MYC proto-oncogene, bHLH transcription factor
located_in
IDA
(PMID:18816594)
UniProt
PMID:18816594
NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
G
MYOC
myocilin
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:171,635,417...171,652,688
Ensembl chr 1:171,635,417...171,652,688
G
PKM
pyruvate kinase M1/2
located_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr15:72,199,029...72,231,591
Ensembl chr15:72,199,029...72,231,819
G
PLOD3
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 7:101,205,984...101,217,581
Ensembl chr 7:101,205,977...101,218,420
G
PSEN1
presenilin 1
located_in
IDA
(PMID:9632714)
UniProt
PMID:9632714
NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691
G
PTGDS
prostaglandin D2 synthase
located_in
IDA IEA
(PMID:9065498)
UniProt
PMID:9065498
GO_REF:0000044
NCBI chr 9:136,977,504...136,981,742
Ensembl chr 9:136,975,092...136,981,742
G
RAB14
RAB14, member RAS oncogene family
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr 9:121,178,133...121,201,869
Ensembl chr 9:121,178,133...121,223,014
G
RANGRF
RAN guanine nucleotide release factor
located_in
IDA
(PMID:23420830)
BHF-UCL
PMID:23420830
NCBI chr17:8,288,670...8,290,087
Ensembl chr17:8,288,654...8,290,092
G
RPL18
ribosomal protein L18
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr19:48,615,331...48,619,178
Ensembl chr19:48,615,328...48,619,184
G
RPL27
ribosomal protein L27
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr17:42,998,273...43,002,959
Ensembl chr17:42,998,273...43,002,959
G
RPL4
ribosomal protein L4
located_in
IDA
(PMID:24454821)
UniProt
PMID:24454821
NCBI chr15:66,498,015...66,504,855
Ensembl chr15:66,498,015...66,524,532
G
RPL6
ribosomal protein L6
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr12:112,405,181...112,418,835
Ensembl chr12:112,405,189...112,418,838
G
RPN1
ribophorin I
located_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:128,619,969...128,650,818
Ensembl chr 3:128,619,969...128,681,075
G
RPS21
ribosomal protein S21
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr20:62,387,103...62,388,520
Ensembl chr20:62,387,103...62,388,520
G
RPS23
ribosomal protein S23
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 5:82,273,320...82,278,354
Ensembl chr 5:82,273,320...82,278,396
G
RPS26
ribosomal protein S26
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr12:56,041,918...56,044,697
Ensembl chr12:56,041,351...56,044,697
G
RPS28
ribosomal protein S28
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr19:8,321,496...8,323,340
Ensembl chr19:8,321,158...8,323,340
G
RPS29
ribosomal protein S29
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr14:49,570,988...49,598,710
Ensembl chr14:49,570,984...49,599,164
G
SEC62
SEC62 homolog, preprotein translocation factor
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr 3:169,966,807...169,998,373
Ensembl chr 3:169,966,635...169,998,373
G
SPPL3
signal peptide peptidase like 3
located_in
IDA
(PMID:15998642)
UniProt
PMID:15998642
NCBI chr12:120,762,510...120,904,358
Ensembl chr12:120,762,510...120,904,358
G
STAU1
staufen double-stranded RNA binding protein 1
located_in
IEA TAS
(PMID:10022909)
UniProt PINC
PMID:10022909
GO_REF:0000044
NCBI chr20:49,113,339...49,219,295
Ensembl chr20:49,113,339...49,188,367
G
STX17
syntaxin 17
NOT|located_in
IDA
(PMID:10930465)
UniProt
PMID:10930465
NCBI chr 9:99,906,654...99,974,534
Ensembl chr 9:99,906,654...99,974,534
G
SUCO
SUN domain containing ossification factor
located_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:172,532,349...172,611,833
Ensembl chr 1:172,532,349...172,611,833
G
SYNE3
spectrin repeat containing nuclear envelope family member 3
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr14:95,407,266...95,516,650
Ensembl chr14:95,407,266...95,516,650
G
TMCC1
transmembrane and coiled-coil domain family 1
located_in
IMP
(PMID:24454821)
UniProt
PMID:24454821
NCBI chr 3:129,647,792...129,893,711
Ensembl chr 3:129,647,792...129,893,711
G
TMEM97
transmembrane protein 97
located_in
IDA
(PMID:19583955)
UniProt
PMID:19583955
NCBI chr17:28,319,200...28,328,685
Ensembl chr17:28,319,200...28,328,685
G
ZC3H12A
zinc finger CCCH-type containing 12A
located_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:37,474,580...37,484,377
Ensembl chr 1:37,474,580...37,484,377
G
ALG5
ALG5 dolichyl-phosphate beta-glucosyltransferase
is_active_in
IGI
(PMID:10359825)
UniProt
PMID:10359825
NCBI chr13:36,949,738...36,999,367
Ensembl chr13:36,949,738...37,000,763
G
EPM2A
EPM2A glucan phosphatase, laforin
located_in
IDA
(PMID:11001928)
UniProt
PMID:11001928
NCBI chr 6:145,383,353...145,736,023
Ensembl chr 6:145,382,535...145,736,023
G
GNRH1
gonadotropin releasing hormone 1
ISO
gonadotropin-releasing hormone-associated peptide
RGD
PMID:2183089
RGD:9685146
NCBI chr 8:25,419,258...25,425,040
Ensembl chr 8:25,419,258...25,424,654
G
ICMT
isoprenylcysteine carboxyl methyltransferase
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 1:6,221,193...6,235,964
Ensembl chr 1:6,221,193...6,235,972
G
RPL10
ribosomal protein L10
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr X:154,398,065...154,402,339
Ensembl chr X:154,389,955...154,409,168
G
RPL11
ribosomal protein L11
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 1:23,691,779...23,696,835
Ensembl chr 1:23,691,742...23,696,835
G
RPL23
ribosomal protein L23
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr17:38,847,860...38,853,721
Ensembl chr17:38,847,860...38,853,764
G
RPL27
ribosomal protein L27
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr17:42,998,273...43,002,959
Ensembl chr17:42,998,273...43,002,959
G
RPL29
ribosomal protein L29
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 3:51,993,522...51,995,895
Ensembl chr 3:51,993,522...51,995,895
G
RPL31
ribosomal protein L31
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 2:101,002,289...101,019,724
Ensembl chr 2:101,002,229...101,024,032
G
RPL32
ribosomal protein L32
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 3:12,834,485...12,841,582
Ensembl chr 3:12,834,485...12,841,582
G
RPL35
ribosomal protein L35
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 9:124,857,883...124,861,957
Ensembl chr 9:124,857,880...124,861,981
G
RPL36AL
ribosomal protein L36a like
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr14:49,618,530...49,620,626
Ensembl chr14:49,618,530...49,620,626
G
RPL6
ribosomal protein L6
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr12:112,405,181...112,418,835
Ensembl chr12:112,405,189...112,418,838
G
RPS15
ribosomal protein S15
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr19:1,438,396...1,440,495
Ensembl chr19:1,438,358...1,440,495
G
RPS16
ribosomal protein S16
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr19:39,433,137...39,435,949
Ensembl chr19:39,433,137...39,435,949
G
RPS17
ribosomal protein S17
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr15:82,536,750...82,540,457
Ensembl chr15:82,536,750...82,540,459
G
RPS18
ribosomal protein S18
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 6:33,272,075...33,276,511
Ensembl chr 6:33,272,075...33,276,511
G
RPS20
ribosomal protein S20
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 8:56,067,254...56,074,506
Ensembl chr 8:56,067,254...56,074,510
G
RPS21
ribosomal protein S21
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr20:62,387,103...62,388,520
Ensembl chr20:62,387,103...62,388,520
G
RPS23
ribosomal protein S23
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 5:82,273,320...82,278,354
Ensembl chr 5:82,273,320...82,278,396
G
RPS26
ribosomal protein S26
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr12:56,041,918...56,044,697
Ensembl chr12:56,041,351...56,044,697
G
RPS28
ribosomal protein S28
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr19:8,321,496...8,323,340
Ensembl chr19:8,321,158...8,323,340
G
RPS29
ribosomal protein S29
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr14:49,570,988...49,598,710
Ensembl chr14:49,570,984...49,599,164
G
RPS3
ribosomal protein S3
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr11:75,399,518...75,422,302
Ensembl chr11:75,399,515...75,422,280
G
RPSA
ribosomal protein SA
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr 3:39,406,720...39,412,542
Ensembl chr 3:39,406,716...39,426,255
G
UBA52
ubiquitin A-52 residue ribosomal protein fusion product 1
located_in
ISO
(PMID:24930395)
UniProt
PMID:24930395
NCBI chr19:18,563,766...18,577,550
Ensembl chr19:18,571,730...18,577,550
G
SEC61B
SEC61 translocon subunit beta
part_of
ISS
UniProt
GO_REF:0000024
NCBI chr 9:99,222,282...99,230,615
Ensembl chr 9:99,222,064...99,230,615
G
ACHE
acetylcholinesterase (Yt blood group)
ISO
RGD
PMID:4413686
RGD:11560526 (All species) (All species)
NCBI chr 7:100,889,994...100,896,994
Ensembl chr 7:100,889,994...100,896,974
G
EDN1
endothelin 1
located_in
ISO IEA
RGD Ensembl
PMID:10903535
GO_REF:0000107 RGD:8662311
NCBI chr 6:12,230,516...12,297,194
Ensembl chr 6:12,290,361...12,297,194
G
LRPAP1
LDL receptor related protein associated protein 1
located_in is_active_in
ISO IEA IBA IDA
(PMID:7774585)
RGD TreeGrafter GO_Central UniProt Ensembl
PMID:7774585 PMID:8223699
GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 RGD:1641935
NCBI chr 4:3,503,612...3,532,422
Ensembl chr 4:3,503,612...3,532,446
G
LYZ
lysozyme
ISO
RGD
PMID:9208328
RGD:1599861
NCBI chr12:69,348,381...69,354,234
Ensembl chr12:69,348,381...69,354,234
G
RESP18
regulated endocrine specific protein 18
ISO
RGD
PMID:8132649
RGD:69957
NCBI chr 2:219,327,407...219,336,656
Ensembl chr 2:219,327,407...219,333,177
G
VTN
vitronectin
located_in
ISO IEA
RGD Ensembl
PMID:10192552
GO_REF:0000107 RGD:10003091
NCBI chr17:28,367,284...28,370,307
Ensembl chr17:28,367,284...28,373,091
G
AC046185.1
novel transcript
located_in
IEA
UniProt
GO_REF:0000044
Ensembl chr17:63,702,845...63,752,097
G
ALDOB
aldolase, fructose-bisphosphate B
ISO
RGD
PMID:234468
RGD:2313431
NCBI chr 9:101,420,560...101,435,774
Ensembl chr 9:101,420,560...101,449,664
G
CCDC47
coiled-coil domain containing 47
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr17:63,745,255...63,773,597
Ensembl chr17:63,745,255...63,776,351
G
MACO1
macoilin 1
located_in is_active_in
IEA IBA IDA
(PMID:21589894)
InterPro GO_Central UniProt
PMID:21589894
GO_REF:0000002 GO_REF:0000033 GO_REF:0000044
NCBI chr 1:25,430,897...25,500,209
Ensembl chr 1:25,430,858...25,500,209
G
PI4KB
phosphatidylinositol 4-kinase beta
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:151,291,797...151,327,715
Ensembl chr 1:151,291,797...151,327,715
G
PLOD1
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:11,934,717...11,975,537
Ensembl chr 1:11,934,205...11,975,538
G
PLOD2
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 3:146,069,440...146,161,184
Ensembl chr 3:146,035,139...146,163,725
G
RHO
rhodopsin
ISO
RGD
PMID:2525480
RGD:6893558
NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
G
SUCO
SUN domain containing ossification factor
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:172,532,349...172,611,833
Ensembl chr 1:172,532,349...172,611,833
G
TMEM97
transmembrane protein 97
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr17:28,319,200...28,328,685
Ensembl chr17:28,319,200...28,328,685
G
UBA1
ubiquitin like modifier activating enzyme 1
located_in
IDA
(PMID:1376922)
UniProt
PMID:1376922
NCBI chr X:47,190,847...47,215,128
Ensembl chr X:47,190,861...47,215,128
G
ZC3H12A
zinc finger CCCH-type containing 12A
located_in
IEA ISS
UniProt Ensembl
GO_REF:0000024 GO_REF:0000044 GO_REF:0000107
NCBI chr 1:37,474,580...37,484,377
Ensembl chr 1:37,474,580...37,484,377
G
ARL6IP1
ADP ribosylation factor like GTPase 6 interacting protein 1
part_of
IEA IBA
Ensembl TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr16:18,791,667...18,801,549
Ensembl chr16:18,791,669...18,801,572
G
SEC61A1
SEC61 translocon subunit alpha 1
part_of
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 3:128,051,641...128,071,683
Ensembl chr 3:128,051,641...128,071,705
G
SEC61A2
SEC61 translocon subunit alpha 2
part_of
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr10:12,129,641...12,169,958
Ensembl chr10:12,129,637...12,169,961
G
SEC61B
SEC61 translocon subunit beta
part_of
IEA IBA
InterPro GO_Central TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr 9:99,222,282...99,230,615
Ensembl chr 9:99,222,064...99,230,615
G
SSR4
signal sequence receptor subunit 4
part_of
ISO NAS
(PMID:7492314), (PMID:9286695)
RGD UniProt
PMID:7492314 PMID:7916687 PMID:9286695
RGD:61758
NCBI chr X:153,794,159...153,798,512
Ensembl chr X:153,793,516...153,798,499
G
SEC63
SEC63 homolog, protein translocation regulator
part_of
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 6:107,867,756...107,958,208
Ensembl chr 6:107,867,756...107,958,208
G
RP9
RP9 pre-mRNA splicing factor
part_of
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:33,094,797...33,109,404
Ensembl chr 7:33,094,797...33,109,405
G
SRP9
signal recognition particle 9
part_of
TAS
(PMID:7730321)
PINC
PMID:7730321
NCBI chr 1:225,777,826...225,790,464
Ensembl chr 1:225,777,813...225,790,468
G
SRPRA
SRP receptor subunit alpha
part_of located_in
IEA EXP
(PMID:16439358)
InterPro ComplexPortal
PMID:16439358
GO_REF:0000002
NCBI chr11:126,235,930...126,268,895
Ensembl chr11:126,262,938...126,269,144
G
SRPRB
SRP receptor subunit beta
located_in part_of
EXP IBA
(PMID:16439358)
ComplexPortal GO_Central
PMID:16439358
GO_REF:0000033
NCBI chr 3:133,784,023...133,828,574
Ensembl chr 3:133,784,023...133,825,772
G
SEC61G
SEC61 translocon subunit gamma
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr 7:54,752,253...54,759,211
Ensembl chr 7:54,752,250...54,759,974
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all