RPL29 (ribosomal protein L29) - Rat Genome Database

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Gene: RPL29 (ribosomal protein L29) Homo sapiens
Analyze
Symbol: RPL29
Name: ribosomal protein L29
RGD ID: 737093
HGNC Page HGNC:10331
Description: A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within cell-substrate adhesion; fibroblast proliferation; and translation. Located in membrane. Part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 60S ribosomal protein L29; cell surface heparin-binding protein HIP; eL29; heparin/heparan sulfate-binding protein; heparin/heparan sulfate-interacting protein; HIP; HP/HS-interacting protein; HUMRPL29; L29; large ribosomal subunit protein eL29; MGC88589; ribosomal protein L29 pseudogene 10; ribosomal protein YL43 homologue; RPL29_3_370; RPL29P10
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: RPL29P1   RPL29P11   RPL29P12   RPL29P13   RPL29P14   RPL29P15   RPL29P16   RPL29P17   RPL29P18   RPL29P19   RPL29P2   RPL29P20   RPL29P21   RPL29P22   RPL29P23   RPL29P24   RPL29P25   RPL29P26   RPL29P27   RPL29P28   RPL29P29   RPL29P3   RPL29P30   RPL29P31   RPL29P32   RPL29P33   RPL29P35   RPL29P4   RPL29P5   RPL29P6   RPL29P7   RPL29P8   RPL29P9  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,993,522 - 51,995,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,993,522 - 51,995,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,027,538 - 52,029,911 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,002,684 - 52,004,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,002,684 - 52,004,998NCBI
Celera352,006,920 - 52,009,228 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,090,984 - 52,093,304 (-)NCBIHuRef
CHM1_1351,980,247 - 51,982,561 (-)NCBICHM1_1
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
cadherin binding  (HDA)
heparin binding  (IEA,TAS)
RNA binding  (HDA,TAS)
structural constituent of ribosome  (IBA,IDA,IEA,NAS,TAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:6468376   PMID:7821789   PMID:8597591   PMID:8662616   PMID:8662617   PMID:8722009   PMID:9371517   PMID:9403071   PMID:10353821   PMID:10833435   PMID:11401437   PMID:11803571  
PMID:12477932   PMID:12659638   PMID:12962325   PMID:14567916   PMID:15189156   PMID:15489334   PMID:15635413   PMID:15721314   PMID:16169070   PMID:16475173   PMID:17353931   PMID:17620340  
PMID:18980226   PMID:19123937   PMID:19738201   PMID:19946888   PMID:20554519   PMID:21081503   PMID:21151833   PMID:21182205   PMID:21873635   PMID:22658674   PMID:22681889   PMID:22863883  
PMID:22868929   PMID:22939629   PMID:22990118   PMID:23125841   PMID:23151878   PMID:23246001   PMID:23398456   PMID:23874603   PMID:24457600   PMID:24711643   PMID:24981860   PMID:24999758  
PMID:25437307   PMID:25468996   PMID:25720964   PMID:25901680   PMID:25921289   PMID:25940091   PMID:26170170   PMID:26344197   PMID:26362536   PMID:26496610   PMID:26527279   PMID:26725010  
PMID:26831064   PMID:26949251   PMID:27025967   PMID:27545878   PMID:27591049   PMID:27684187   PMID:27976729   PMID:28077445   PMID:28225217   PMID:28302793   PMID:28514442   PMID:28927264  
PMID:29180619   PMID:29229926   PMID:29298432   PMID:29331416   PMID:29467282   PMID:29490077   PMID:29540532   PMID:29568061   PMID:29721183   PMID:29777862   PMID:29802200   PMID:29845934  
PMID:30021884   PMID:30196744   PMID:30209976   PMID:30258100   PMID:30344098   PMID:30349055   PMID:30404004   PMID:30463901   PMID:30575818   PMID:30804502   PMID:30824926   PMID:30948266  
PMID:30997501   PMID:31048545   PMID:31059266   PMID:31073040   PMID:31180492   PMID:31239290   PMID:31248990   PMID:31300519   PMID:31324722   PMID:31365120   PMID:31409639   PMID:31470122  
PMID:31586073   PMID:31871319   PMID:31882427   PMID:31980649   PMID:31995728   PMID:32041737   PMID:32129710   PMID:32457219   PMID:32552912   PMID:32665550   PMID:32669547   PMID:32687490  
PMID:32698014   PMID:32798643   PMID:32807901   PMID:32867128   PMID:32905556   PMID:32908313   PMID:32929329   PMID:33462405   PMID:33644029   PMID:33658012   PMID:33729478   PMID:33781803  
PMID:33838681   PMID:33916271   PMID:33961781   PMID:33989516   PMID:34186245   PMID:34316702   PMID:34537242   PMID:34650049   PMID:35013218   PMID:35013556   PMID:35253629   PMID:35256949  
PMID:35271311   PMID:35338135   PMID:35384245   PMID:35446349   PMID:35509820   PMID:35543156   PMID:35652658   PMID:35676659   PMID:35819319   PMID:35831314   PMID:35831895   PMID:35844135  
PMID:35850772   PMID:35944360   PMID:36042349   PMID:36057605   PMID:36059274   PMID:36114006   PMID:36215168   PMID:36217030   PMID:36307841   PMID:36424410   PMID:36517590   PMID:36526897  
PMID:36537216   PMID:36574265   PMID:36912080   PMID:36964488   PMID:37616343   PMID:37827155   PMID:38113892   PMID:38172120  


Genomics

Comparative Map Data
RPL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,993,522 - 51,995,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,993,522 - 51,995,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,027,538 - 52,029,911 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,002,684 - 52,004,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,002,684 - 52,004,998NCBI
Celera352,006,920 - 52,009,228 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,090,984 - 52,093,304 (-)NCBIHuRef
CHM1_1351,980,247 - 51,982,561 (-)NCBICHM1_1
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBIT2T-CHM13v2.0
Rpl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,306,631 - 106,308,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,306,653 - 106,308,767 (+)EnsemblGRCm39 Ensembl
GRCm389106,428,889 - 106,431,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,429,454 - 106,431,568 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,331,870 - 106,333,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,287,640 - 106,289,668 (+)NCBIMGSCv36mm8
Celera9106,056,937 - 106,058,955 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.49NCBI
Rpl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,056,443 - 115,949,677 (+)NCBIGRCr8
mRatBN7.28107,068,929 - 107,070,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,691,899 - 112,693,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,891,075 - 110,893,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,733,855 - 108,735,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,131,228 - 115,133,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,495,464 - 114,497,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,573,459 - 111,575,493 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,592,913 - 111,594,948 (+)NCBI
Celera8106,380,871 - 106,382,905 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rpl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBIChiLan1.0ChiLan1.0
RPL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,988,050 - 51,990,436 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,992,820 - 51,995,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,935,053 - 51,937,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,727,161 - 37,729,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBIUU_Cfam_GSD_1.0
Rpl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,576,559 - 66,587,413 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,337,056 - 3,339,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,119,539 - 34,121,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,119,541 - 34,121,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,316,234 - 37,318,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q21-q22NCBI
RPL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,362,348 - 13,365,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041153,541,343 - 153,544,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,807,029 - 5,810,138 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL29
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p21.31-14.3(chr3:49461000-55314500)x1 copy number loss See cases [RCV000051511] Chr3:49461000..55314500 [GRCh38]
Chr3:49498433..55348528 [GRCh37]
Chr3:49473437..55323568 [NCBI36]
Chr3:3p21.31-14.3		 pathogenic
GRCh38/hg38 3p21.2-14.3(chr3:51394434-55064449)x1 copy number loss See cases [RCV000143631] Chr3:51394434..55064449 [GRCh38]
Chr3:51431865..55098476 [GRCh37]
Chr3:51406905..55073516 [NCBI36]
Chr3:3p21.2-14.3		 likely pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_000992.3(RPL29):c.320G>A (p.Arg107His) single nucleotide variant Inborn genetic diseases [RCV003243684] Chr3:51993909 [GRCh38]
Chr3:52027925 [GRCh37]
Chr3:3p21.2		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p21.2(chr3:51982251-52064510)x1 copy number loss not provided [RCV000742402] Chr3:51982251..52064510 [GRCh37]
Chr3:3p21.2		 benign
GRCh37/hg19 3p21.31-21.1(chr3:45153770-53878616) copy number gain not provided [RCV000767704] Chr3:45153770..53878616 [GRCh37]
Chr3:3p21.31-21.1		 pathogenic
GRCh37/hg19 3p21.2-21.1(chr3:51247306-53069942)x3 copy number gain not provided [RCV001005434] Chr3:51247306..53069942 [GRCh37]
Chr3:3p21.2-21.1		 uncertain significance
NC_000003.11:g.(?_52018081)_(53845433_?)del deletion not provided [RCV003105312] Chr3:52018081..53845433 [GRCh37]
Chr3:3p21.2-21.1		 uncertain significance
GRCh37/hg19 3p21.2-21.1(chr3:51975459-52561678)x4 copy number gain not provided [RCV001259685] Chr3:51975459..52561678 [GRCh37]
Chr3:3p21.2-21.1		 uncertain significance
NC_000003.11:g.(?_52018081)_(52188388_?)del deletion not provided [RCV003119584] Chr3:52018081..52188388 [GRCh37]
Chr3:3p21.2		 pathogenic
NM_000992.3(RPL29):c.247C>T (p.Pro83Ser) single nucleotide variant Inborn genetic diseases [RCV003280583] Chr3:51993982 [GRCh38]
Chr3:52027998 [GRCh37]
Chr3:3p21.2		 uncertain significance
NM_000992.3(RPL29):c.189G>C (p.Lys63Asn) single nucleotide variant Inborn genetic diseases [RCV002993155] Chr3:51994040 [GRCh38]
Chr3:52028056 [GRCh37]
Chr3:3p21.2		 uncertain significance
NM_000992.3(RPL29):c.325C>T (p.Arg109Cys) single nucleotide variant Inborn genetic diseases [RCV002718033] Chr3:51993904 [GRCh38]
Chr3:52027920 [GRCh37]
Chr3:3p21.2		 uncertain significance
GRCh37/hg19 3p21.2-14.2(chr3:51149374-59265315)x1 copy number loss not specified [RCV003986409] Chr3:51149374..59265315 [GRCh37]
Chr3:3p21.2-14.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2925
Count of miRNA genes:721
Interacting mature miRNAs:829
Transcripts:ENST00000294189, ENST00000466397, ENST00000475248, ENST00000479017, ENST00000480306, ENST00000481629, ENST00000486565, ENST00000492277, ENST00000495383
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RPL29_3440  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37352,027,490 - 52,028,107UniSTSGRCh37
Build 36352,002,530 - 52,003,147RGDNCBI36
Celera352,006,766 - 52,007,377RGD
HuRef352,090,830 - 52,091,453UniSTS
G42918  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17p13UniSTS
Cytogenetic Map3p21.3-p21.2UniSTS
D20S1103  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p21.3-p21.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 224 90 150 35 445 32 1687 107 83 54 579 218 7 318 761 2
Medium 2209 2895 1573 587 1504 432 2669 2086 3625 364 869 1386 165 886 2027 3
Low 6 6 3 2 2 1 1 4 26 1 12 6 3 1 1 2
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_000992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D28412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000294189   ⟹   ENSP00000294189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,522 - 51,995,895 (-)Ensembl
RefSeq Acc Id: ENST00000466397   ⟹   ENSP00000418868
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,628 - 51,995,863 (-)Ensembl
RefSeq Acc Id: ENST00000475248   ⟹   ENSP00000417048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,723 - 51,995,815 (-)Ensembl
RefSeq Acc Id: ENST00000479017   ⟹   ENSP00000418153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,629 - 51,995,830 (-)Ensembl
RefSeq Acc Id: ENST00000480306   ⟹   ENSP00000419333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,628 - 51,995,881 (-)Ensembl
RefSeq Acc Id: ENST00000481629   ⟹   ENSP00000418839
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,994,297 - 51,995,881 (-)Ensembl
RefSeq Acc Id: ENST00000486565
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,994,935 - 51,995,895 (-)Ensembl
RefSeq Acc Id: ENST00000492277   ⟹   ENSP00000418346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,750 - 51,995,814 (-)Ensembl
RefSeq Acc Id: ENST00000495383   ⟹   ENSP00000420673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,629 - 51,995,844 (-)Ensembl
RefSeq Acc Id: ENST00000648640   ⟹   ENSP00000497923
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl351,993,522 - 51,995,857 (-)Ensembl
RefSeq Acc Id: NM_000992   ⟹   NP_000983
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,993,522 - 51,995,895 (-)NCBI
GRCh37352,027,644 - 52,029,958 (-)ENTREZGENE
Build 36352,002,684 - 52,004,998 (-)NCBI Archive
HuRef352,090,984 - 52,093,304 (-)ENTREZGENE
CHM1_1351,980,247 - 51,982,561 (-)NCBI
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_000983   ⟸   NM_000992
- UniProtKB: B2R4M8 (UniProtKB/Swiss-Prot),   A8K0H3 (UniProtKB/Swiss-Prot),   Q6IPY3 (UniProtKB/Swiss-Prot),   P47914 (UniProtKB/Swiss-Prot),   Q6IPI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000497923   ⟸   ENST00000648640
RefSeq Acc Id: ENSP00000418153   ⟸   ENST00000479017
RefSeq Acc Id: ENSP00000294189   ⟸   ENST00000294189
RefSeq Acc Id: ENSP00000418868   ⟸   ENST00000466397
RefSeq Acc Id: ENSP00000418346   ⟸   ENST00000492277
RefSeq Acc Id: ENSP00000419333   ⟸   ENST00000480306
RefSeq Acc Id: ENSP00000418839   ⟸   ENST00000481629
RefSeq Acc Id: ENSP00000420673   ⟸   ENST00000495383
RefSeq Acc Id: ENSP00000417048   ⟸   ENST00000475248

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47914-F1-model_v2 AlphaFold P47914 1-159 view protein structure

Promoters
RGD ID:6864602
Promoter ID:EPDNEW_H5466
Type:initiation region
Name:RPL29_1
Description:ribosomal protein L29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5467  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,995,895 - 51,995,955EPDNEW
RGD ID:6864698
Promoter ID:EPDNEW_H5467
Type:single initiation site
Name:RPL29_2
Description:ribosomal protein L29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5466  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38351,996,411 - 51,996,471EPDNEW
RGD ID:6801596
Promoter ID:HG_KWN:45203
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000339228
Position:
Human AssemblyChrPosition (strand)Source
Build 36352,004,496 - 52,004,996 (-)MPROMDB
RGD ID:6852990
Promoter ID:EP74315
Type:multiple initiation site
Name:HS_RPL29
Description:Ribosomal protein L29.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 36352,005,467 - 52,005,527EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10331 AgrOrtholog
COSMIC RPL29 COSMIC
Ensembl Genes ENSG00000162244 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000294189 ENTREZGENE
  ENST00000294189.11 UniProtKB/Swiss-Prot
  ENST00000466397.5 UniProtKB/Swiss-Prot
  ENST00000475248.5 UniProtKB/Swiss-Prot
  ENST00000479017.5 UniProtKB/Swiss-Prot
  ENST00000480306.5 UniProtKB/TrEMBL
  ENST00000481629.1 UniProtKB/TrEMBL
  ENST00000492277.5 UniProtKB/Swiss-Prot
  ENST00000495383.5 UniProtKB/Swiss-Prot
  ENST00000648640.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000162244 GTEx
HGNC ID HGNC:10331 ENTREZGENE
Human Proteome Map RPL29 Human Proteome Map
InterPro Ribosomal_L29e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6159 UniProtKB/Swiss-Prot
NCBI Gene 6159 ENTREZGENE
OMIM 601832 OMIM
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34711 PharmGKB
UniProt A0A3B3ITT5_HUMAN UniProtKB/TrEMBL
  A8K0H3 ENTREZGENE
  B2R4M8 ENTREZGENE
  C9IYI4_HUMAN UniProtKB/TrEMBL
  F8WF43_HUMAN UniProtKB/TrEMBL
  P47914 ENTREZGENE
  Q6IPI1 ENTREZGENE, UniProtKB/TrEMBL
  Q6IPY3 ENTREZGENE
  RL29_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K0H3 UniProtKB/Swiss-Prot
  B2R4M8 UniProtKB/Swiss-Prot
  Q6IPY3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 RPL29  ribosomal protein L29  RPL29P10  ribosomal protein L29 pseudogene 10  Data merged from RGD:2305261 737654 PROVISIONAL