D3Rat156 Marker Search Result - Rat Genome Database

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Marker: D3Rat156

Symbol: D3Rat156
Previously known as: oxsts10698; R0088-C10; 
RGD ID: 39382
Expected Size: 102 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83143,965,998 - 143,966,100 (+)Marker Load Pipeline
mRatBN7.23123,513,284 - 123,513,386 (+)MAPPERmRatBN7.2
Rnor_6.03129,166,111 - 129,166,212NCBIRnor6.0
Rnor_5.03135,651,587 - 135,651,688UniSTSRnor5.0
RGSC_v3.43124,268,926 - 124,269,028RGDRGSC3.4
RGSC_v3.43124,268,927 - 124,269,028UniSTSRGSC3.4
RGSC_v3.13124,174,278 - 124,174,628RGD
Celera3122,243,230 - 122,243,331UniSTS
SHRSP x BN Map360.7499UniSTS
SHRSP x BN Map360.7499RGD
Cytogenetic Map3q36UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SS-Chr3BN.SS-(D3Rat36-D3Rat156)/Mcwi  
Genes:   Pak5  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CTGTCCAACTTTCCAGGTGG
Reverse Primer TCCTTCACAACACAAACCCTC
 
Template 
GACNCTAGAGGATCCCCACTTCCCTCCATGTTTACATACAACACAGTCCTTCACAACACAAACC
CTCACAACATATATACATACACACACACACACACACACACACACACACACACACACACACTACT
TTGTTCAGCCACCTGGAAAGTTGGACAGTTATCCGTTCTACTTTGTGTCCCATAGTTTCTGTTG
CAACAACTTCTCAAATATCTATACTCAGTCTAGGTTTAGAGAATGTTTTCCATTTTCTGAGCTA
TGTTTCTCCTCCTCTCTTTCTTTTGTAAGAAGGATGGAGCATCTTAATGTAAATCTTGAATTGG
TGAGTTACAGAACTCCTAGCACAATGTTGCCTATATTTAGGGGCTTCTGTCAGTGGTGGGTACC
GAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCA
Strain, Expected Size(s)

ACI/N 112 AVN/Orl 112 BBDP/Rhw 112
BBDR/Rhw 112 BC/CpbU 118 BDIX/Han 112
BDVII/Cub 112 BN-Lx/Cub 104 BN/SsNHsd 104
BP/Cub 104 BUF/Pit 112 COP/OlaHsd 112
DA/PitN 112 DON/Melb 116 F344/Pit 116
FHH/Eur 112 GH/Omr 112 GK/KyoSwe 112
IS/Kyo 112 LE/Mol 104 LEW/Pit 112
LH/Mav 112 LN/Mav 112 LOU/CHan 112
M520/N 112 MHS/Gib 114 MNR/N 112
MNRA/N 112 MNS/Gib 104 MR/Pit 112
NEDH/K 112 NP9 112 ODU/N 118
OKA/Wsl 112 OM/Ztm 116 P5C 112
PVG/Pit 112 SD/Rij 116 SHR/OlaHsd 116
SHRSP/Riv 112 SR/Jr 112 SS/Jr 112
WAG/RijKyo 112 WF/Pit 118 WIST/Nhg 118
WKY/OlaHsd 118 WN/N 112 WTC/Kyo 118


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1312009Pak5p21 (RAC1) activated kinase 53123395678123703967Rat
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat

1 to 10 of 29 rows


Database
Acc Id
Source(s)
NCBI Gene 311450 UniSTS