D3Rat133 Marker Search Result - Rat Genome Database

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Marker: D3Rat133

Symbol: D3Rat133
Previously known as: oxsts6937; R0087-B12; 
RGD ID: 39334
Expected Size: 232 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83124,306,308 - 124,306,540 (+)Marker Load Pipeline
mRatBN7.23103,852,246 - 103,852,478 (+)MAPPERmRatBN7.2
Rnor_6.03108,666,116 - 108,666,347NCBIRnor6.0
Rnor_5.03115,223,199 - 115,223,430UniSTSRnor5.0
RGSC_v3.43103,048,533 - 103,048,764UniSTSRGSC3.4
RGSC_v3.43103,048,385 - 103,048,770RGDRGSC3.4
RGSC_v3.13102,944,961 - 102,945,192RGD
Celera3102,788,247 - 102,788,478UniSTS
RH 3.4 Map3790.3RGD
RH 3.4 Map3790.3UniSTS
RH 2.0 Map3557.8RGD
SHRSP x BN Map350.6298RGD
FHH x ACI Map360.54RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GATTGCAGAATGACTGGCAT
Reverse Primer ACCCTTTGCCTCCATTCTCT
 
Template 
CAGAGGATCCCCCCCTGATGACTAAGGAAGGCTGGCAACTGGTAAACCAGACCAGAGCATGTCT
CTACCTCCTCAGTATACAAACTACAAACATGTGCCAATGACGGTCACAAGTATTAAACACAGAA
AAAAGAAAAATAGCCGATTTGAATTTCTCTTACCCTTTGCCTCCATTCTCTGGGTCTCAGGTAC
ACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTATAGATATGTCACAT
ACTCACATACAACATACATATATACCTAGTCCTAGAATCACTTAAGAATATAAATTCTGAAAAA
AACATGACATAAGTATAAATATAAAAAAAANAAACTTTCCCTAGAAATATGCCAGTCATTCTGC
AATCCCATCT
Strain, Expected Size(s)

ACI/N 214 AVN/Orl 234 BBDP/Rhw 218
BBDR/Rhw 218 BC/CpbU 234 BDIX/Han 218
BDVII/Cub 234 BN-Lx/Cub 234 BN/SsNHsd 234
BP/Cub 214 BUF/Pit 234 COP/OlaHsd 234
DA/PitN 214 DON/Melb 234 F344/Pit 234
FHH/Eur 234 GH/Omr 234 GK/KyoSwe 218
IS/Kyo 218 LE/Mol 234 LEW/Pit 234
LH/Mav 234 LN/Mav 234 LOU/CHan 234
M520/N 234 MHS/Gib 234 MNR/N 234
MNRA/N 234 MNS/Gib 234 MR/Pit 234
NEDH/K 234 NP9 234 ODU/N 228
OKA/Wsl 218 OM/Ztm 234 P5C 218
PVG/Pit 218 SD/Rij 234 SHR/OlaHsd 218
SHRSP/Riv 218 SR/Jr 234 SS/Jr 234
WAG/RijKyo 234 WF/Pit 234 WIST/Nhg 234
WKY/OlaHsd 234 WN/N 234 WTC/Kyo 230


GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 42 rows