D9Rat100 Marker Search Result - Rat Genome Database

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Marker: D9Rat100

Symbol: D9Rat100
Previously known as: oxsts7488; R0054-D05; 
RGD ID: 37312
Expected Size: 101 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,658,024 - 94,658,115 (+)MAPPERmRatBN7.2
Rnor_6.09101,574,062 - 101,574,152NCBIRnor6.0
Rnor_5.09101,201,290 - 101,201,380UniSTSRnor5.0
RGSC_v3.4993,434,940 - 93,435,031RGDRGSC3.4
RGSC_v3.4993,434,941 - 93,435,031UniSTSRGSC3.4
RGSC_v3.1993,644,421 - 93,644,511RGD
Celera992,178,138 - 92,178,228UniSTS
RH 3.4 Map9810.8RGD
RH 3.4 Map9810.8UniSTS
RH 2.0 Map91008.7RGD
SHRSP x BN Map963.6399RGD
FHH x ACI Map972.26RGD
Is Marker For: Strains:   AVN/Orl   BBDR/Rhw   COP/OlaHsd   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
3. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
5. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
6. UniSTS Pipeline RGD automated pipelines
7. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
8. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TTTTAGTGTGCATGCAGAGG
Reverse Primer CCAAAACATTCCAGAGCACA
 
Template 
ACCNCCCNCCCCCCCCGCCCCCCCCNCCCCTACCCCCGAGGCAGTGCAACTTGCATGCTGCAGG
TCGATCTAGAGGATCCCCACATTAAATATGAGTAGTAAATAGACTGGATCCATCATGTCTCACG
CATTTTAAAATACTCATATATGTATTTTATGGACTGGTGAGATTGCTCAGTGGGTAAATGTTCT
TGTTGCTGAAGACTGATGACCTGAATTTGATCCCTAGAACCCACAATGAAGGAGAGAACAAATC
TCCAAAACATTCCAGAGCACACAACCACCAATGCACACACCACACACACACACACACACACACA
CACACACACACACACACACCTCTGCATGCACACTAAAATTTACATTTTAAAAGCATATATATTA
TAATGAATAAATGACAAATTAGTTTTGAAGTGCTACTGAATTCATTATGGTGGGTACCGAGCTC
GAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACAC
AACATANGAGCCGGAAGCATACAGTGTAAAGCCTGGGGTGCTAATGAGTGAGNNCTCACATTA

Region

Nucleotide Sequences
GenBank Nucleotide CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat


Additional Information

Database Acc Id Source(s)
UniSTS 119149 UniSTS