D19Rat15 Marker Search Result - Rat Genome Database

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General

Marker: D19Rat15

Symbol:

D19Rat15

Previously known as:

oxsts6492; R028-B06; R0028-B06;

RGD ID:

35959

Expected Size:

160 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	14,324,688 - 14,324,854 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	15,721,763 - 15,721,928	NCBI	Rnor6.0
Rnor_5.0	19	26,807,831 - 26,807,996	UniSTS	Rnor5.0
RGSC_v3.4	19	15,426,091 - 15,426,458	RGD	RGSC3.4
RGSC_v3.4	19	15,426,254 - 15,426,419	UniSTS	RGSC3.4
RGSC_v3.1	19	15,430,917 - 15,431,284	RGD
Celera	19	14,240,324 - 14,240,489	UniSTS
RH 2.0 Map	19	253.5	RGD
SHRSP x BN Map	19	11.2699	RGD
FHH x ACI Map	19	16.7799	RGD

Is Marker For:

Strains: AVN/Orl BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Uminl5 Pigfal10 Scort11 Insglur8

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GCTGAGGCTGAGAAAAAGGA
Reverse Primer	GGTCTCACTGTGCTTTTCCC

Template	ATGCTGCAGGTCGACTCTAGAGGATCCCCACTCTAGAACCCTCAAGCAGTGTCTCTGCATTGAG ATCTGGTCTCACTGTGCTTTTCCCAGTTACTAAGGGATTTCAGTGTGCACGCACACGCACGCAC AAACACACACACACACACACACACACACACACATATATCTCCAACTTTGAGAATTCATACACTA TATCCAGGCTGTTCCTTTTTCTCAGCCTCAGCATTTTTAAAATCTGTATGGGGCAGGTGAAGGG CGGCATCCTCTGCTCTCTGGCTGAAAGTCTGAGGTCCTAACAGGACTCTGGTCCTACCCTGCTT ACAGCTCTTCACATGACAGTAGCTGGTTTCCAGAGCAACAGCCTCCAGTGACCTCGGTTAGAAG GTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCG CTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCTAATGAGT GAGCTACTCAATTAATTGCGTTGGTCATGCCGCTTC

Strain Variation

Strain, Expected Size(s)

ACI/N	159
AVN/Orl	171
BBDR/Rhw	175
BC/CpbU	175
BDIX/Han	159
BDVII/Cub	159
BN-Lx/Cub	165
BN/SsNHsd	165
BP/Cub	175
BUF/Pit	171
COP/OlaHsd	159
DA/PitN	159

DON/Melb	179
F344/Pit	179
FHH/Eur	171
GH/Omr	175
GK/KyoSwe	175
IS/Kyo	155
LE/Mol	171
LEW/Pit	171
LH/Mav	175
LN/Mav	171
LOU/CHan	171
M520/N	173

MHS/Gib	171
MNR/N	171
MNRA/N	175
MNS/Gib	171
MR/Pit	175
NEDH/K	175
NP9	171
ODU/N	171
OKA/Wsl	159
OM/Ztm	175
P5C	171
PVG/Pit	175

SD/Rij	175
SHR/OlaHsd	159
SHRSP/Riv	159
SR/Jr	175
SS/Jr	171
WAG/RijKyo	171
WF/Pit	173
WIST/Nhg	171
WKY/OlaHsd	171
WN/N	171
WTC/Kyo	171

Region

Nucleotide Sequences


GenBank Nucleotide	AU027138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH619393.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10323180	23069265	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24688055	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	13926401	30303727	Rat

Additional Information

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Marker: D19Rat15