Hspa4 (heat shock protein family A (Hsp70) member 4) - Rat Genome Database

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Gene: Hspa4 (heat shock protein family A (Hsp70) member 4) Rattus norvegicus
Analyze
Symbol: Hspa4
Name: heat shock protein family A (Hsp70) member 4
RGD ID: 628878
Description: Enables RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of angiogenesis; and regulation of microglial cell activation. Located in lipid droplet. Used to study adult respiratory distress syndrome and middle cerebral artery infarction. Biomarker of Parkinson's disease and liver benign neoplasm. Human ortholog(s) of this gene implicated in Chagas disease. Orthologous to human HSPA4 (heat shock protein family A (Hsp70) member 4); PARTICIPATES IN cortisol signaling pathway; estrogen signaling pathway; antigen processing and presentation pathway; INTERACTS WITH (+)-schisandrin B; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heat shock 70 kDa protein 4; heat shock protein 4; heat shock protein family A member 4; Hsp110; Hsp70; irp94; ischemia responsive 94 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81037,908,866 - 37,951,994 (-)NCBIGRCr8
mRatBN7.21037,408,025 - 37,449,080 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1037,408,025 - 37,449,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1042,101,220 - 42,141,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01041,591,248 - 41,631,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01037,094,962 - 37,135,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01038,601,624 - 38,642,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,601,624 - 38,642,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,383,101 - 38,424,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,705,629 - 38,749,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11038,712,058 - 38,755,488 (-)NCBI
Celera1036,756,477 - 36,796,741 (-)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Hspa4Ratadult respiratory distress syndrome  IDA 5688755 RGD 
Hspa4RatBrain Injuries  IEP 5688785protein:increased expression:cerebral white matter (rat)RGD 
Hspa4RatChagas disease  ISOHSPA4 (Homo sapiens)6218957 RGD 
Hspa4Ratchronic obstructive pulmonary disease  ISOHSPA4 (Homo sapiens)5688779protein:increased expression:serum (human)RGD 
Hspa4Ratchronic obstructive pulmonary disease no_associationISOHSPA4 (Homo sapiens)5688781protein:increased expression:bronchial mucosa (human)RGD 
Hspa4Ratdry eye syndrome  ISOHspa4 (Mus musculus)6218964protein:increased expression:corneal epithelium (mouse)RGD 
Hspa4RatHeat Stroke  IMP 5686871 RGD 
Hspa4Ratliver benign neoplasm  IEP 5686872protein:increased expression:liver (rat)RGD 
Hspa4Ratmiddle cerebral artery infarction  IMP 5688754rat gene in mouse modelRGD 
Hspa4Ratmiddle cerebral artery infarction  ISOHspa4 (Mus musculus)6218961 RGD 
Hspa4Ratneurodegenerative disease  ISOHspa4 (Mus musculus)6218995protein:increased expression:dentate gyrus (mouse)RGD 
Hspa4RatParkinson's disease  IEP 5686884protein:decreased expression:striatum (rat)RGD 
Hspa4Ratrheumatoid arthritis  ISOHSPA4 (Homo sapiens)5688784protein:increased expression:peripheral blood lymphocyte (human)RGD 
Hspa4RatSpinal Cord Compression  ISOHspa4 (Mus musculus)6218959protein:increased expression:spinal cord (mouse)RGD 
Hspa4Rattype 2 diabetes mellitus  ISOHSPA4 (Homo sapiens)6218966protein:increased expression:serum (human)RGD 
Hspa4Ratulcerative colitis  ISOHSPA4 (Homo sapiens)5688753protein:increased expression:colon mucosa and epithelium (human)RGD 
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Original Reference(s)
Hspa4Ratfamilial adenomatous polyposis 1  ISOHSPA4 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
Hspa4RatHereditary Neoplastic Syndromes  ISOHSPA4 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
Hspa4RatNeurodevelopmental Disorders  ISOHSPA4 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Original Reference(s)
Hspa4Ratfacioscapulohumeral muscular dystrophy  ISOHSPA4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12868502

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Original Reference(s)
Hspa4Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of HSPA4 mRNA]CTDPMID:31150632
Hspa4Rat(-)-epigallocatechin 3-gallate increases expressionISOHSPA4 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of HSPA4 proteinCTDPMID:31195006
Hspa4Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOHspa4 (Mus musculus)6480464o and p'-DDT results in increased expression of HSPA4 mRNACTDPMID:24096037
Hspa4Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o more ...CTDPMID:22937105 and PMID:24096037
Hspa4Rat1,2-dichloroethane increases expressionISOHspa4 (Mus musculus)6480464ethylene dichloride results in increased expression of HSPA4 mRNACTDPMID:28189721 and PMID:28960355
Hspa4Rat1,2-dimethylhydrazine multiple interactionsISOHspa4 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of HSPA4 mRNA]CTDPMID:22206623
Hspa4Rat1,2-dimethylhydrazine increases expressionISOHspa4 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of HSPA4 mRNACTDPMID:22206623
Hspa4Rat1-naphthyl isothiocyanate increases expressionISOHspa4 (Mus musculus)64804641-Naphthylisothiocyanate results in increased expression of HSPA4 mRNACTDPMID:15913567
Hspa4Rat1-naphthyl isothiocyanate multiple interactionsISOHspa4 (Mus musculus)6480464O(2)-vinyl-1-(pyrrolidin-1-yl)diazen-1-ium-1 and 2-diolate inhibits the reaction [1-Naphthylisothiocyanate results in increased expression of HSPA4 mRNA]CTDPMID:15913567
Hspa4Rat17alpha-ethynylestradiol affects expressionISOHspa4 (Mus musculus)6480464Ethinyl Estradiol affects the expression of HSPA4 mRNACTDPMID:17555576
Hspa4Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of HSPA4 mRNACTDPMID:16174780 and PMID:24096037
Hspa4Rat17alpha-ethynylestradiol increases expressionISOHspa4 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of HSPA4 mRNACTDPMID:16174780 more ...
Hspa4Rat17alpha-ethynylestradiol multiple interactionsISOHspa4 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of HSPA4 mRNACTDPMID:17942748
Hspa4Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of HSPA4 mRNACTDPMID:20068009
Hspa4Rat17beta-estradiol increases expressionISOHspa4 (Mus musculus)6480464Estradiol results in increased expression of HSPA4 mRNACTDPMID:14664709 and PMID:39298647
Hspa4Rat17beta-estradiol increases expressionISOHSPA4 (Homo sapiens)6480464Estradiol results in increased expression of HSPA4 mRNACTDPMID:16514628 and PMID:31614463
Hspa4Rat1H-pyrazole increases expressionISOHspa4 (Mus musculus)6480464pyrazole results in increased expression of HSPA4 mRNACTDPMID:17945193
Hspa4Rat2,2',5,5'-tetrachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:23829299
Hspa4Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOHSPA4 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of HSPA4 mRNACTDPMID:12377990
Hspa4Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOHspa4 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of HSPA4 mRNACTDPMID:21570461

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Biological Process
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Cellular Component
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Original Reference(s)
Hspa4Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Hspa4Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Hspa4Ratcytosol located_inISOHSPA4 (Homo sapiens)1624291 PMID:21231916RGDPMID:21231916
Hspa4Ratcytosol is_active_inIBAPANTHER:PTN000452854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hspa4Ratcytosol located_inIEAUniProtKB:P34932 and ensembl:ENSP000003029611600115GO_REF:0000107EnsemblGO_REF:0000107
Hspa4Ratextracellular exosome located_inISOHSPA4 (Homo sapiens)1624291 PMID:21276792RGDPMID:21276792
Hspa4Ratextracellular exosome located_inIEAUniProtKB:P34932 and ensembl:ENSP000003029611600115GO_REF:0000107EnsemblGO_REF:0000107
Hspa4Ratlipid droplet  IDA 4892095 RGD 
Hspa4Ratmitochondrion located_inIEAGO:00450401600115GO_REF:0000108GOCGO_REF:0000108
Hspa4Ratnucleus is_active_inIBAPANTHER:PTN000452854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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RGD Manual Annotations


  
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Original Reference(s)
Hspa4Ratcortisol signaling pathway   ISOHSPA4 (Homo sapiens)5144125 RGD 
Hspa4Ratestrogen signaling pathway   ISOHSPA4 (Homo sapiens)4892102 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Hspa4Ratantigen processing and presentation pathway  IEA 6907045 KEGGrno:04612

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#
Reference Title
Reference Citation
1. Black currant phytoconstituents exert chemoprevention of diethylnitrosamine-initiated hepatocarcinogenesis by suppression of the inflammatory response. Bishayee A, etal., Mol Carcinog. 2011 Dec 27. doi: 10.1002/mc.21860.
2. Convergent sets of data from in vivo and in vitro methods point to an active role of Hsp60 in chronic obstructive pulmonary disease pathogenesis. Cappello F, etal., PLoS One. 2011;6(11):e28200. Epub 2011 Nov 28.
3. Administration of carnosine in the treatment of acute spinal cord injury. Di Paola R, etal., Biochem Pharmacol. 2011 Nov 15;82(10):1478-89. Epub 2011 Jul 20.
4. Short-term follow-up of chagasic patients after benznidazole treatment using multiple serological markers. Fernandez-Villegas A, etal., BMC Infect Dis. 2011 Jul 31;11:206.
5. BAG3 protein is overexpressed in human glioblastoma and is a potential target for therapy. Festa M, etal., Am J Pathol. 2011 Jun;178(6):2504-12. Epub 2011 May 10.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Elevated HSP27, HSP70 and HSP90 alpha in chronic obstructive pulmonary disease: markers for immune activation and tissue destruction. Hacker S, etal., Clin Lab. 2009;55(1-2):31-40.
9. Hsp70 regulates the interaction between the peroxisome targeting signal type 1 (PTS1)-receptor Pex5p and PTS1. Harano T, etal., Biochem J. 2001 Jul 1;357(Pt 1):157-65.
10. Riluzole prevents morphine-induced apoptosis in rat cerebral cortex. Hassanzadeh K, etal., Pharmacol Rep. 2011;63(3):697-707.
11. Mildronate as a regulator of protein expression in a rat model of Parkinson's disease. Isajevs S, etal., Medicina (Kaunas). 2011;47(10):552-9.
12. Heat shock protein 70 is translocated to lipid droplets in rat adipocytes upon heat stimulation. Jiang H, etal., Biochim Biophys Acta. 2007 Jan;1771(1):66-74. Epub 2006 Nov 15.
13. Developmental immunolocalization of heat shock protein 70 (HSP70) in epithelial cell of rat kidney. Kang SS, etal., Histol Histopathol. 2011 Nov;26(11):1363-73.
14. HSP70 protein promotes survival of C6 and U87 glioma cells by inhibition of ATF5 degradation. Li G, etal., J Biol Chem. 2011 Jun 10;286(23):20251-9. Epub 2011 Apr 25.
15. Therapeutic efficacy of trehalose eye drops for treatment of murine dry eye induced by an intelligently controlled environmental system. Li J, etal., Mol Vis. 2012;18:317-29. Epub 2012 Feb 4.
16. TLR2 ligand induces protection against cerebral ischemia/reperfusion injury via activation of phosphoinositide 3-kinase/Akt signaling. Lu C, etal., J Immunol. 2011 Aug 1;187(3):1458-66. Epub 2011 Jun 27.
17. Initiation but no execution - modulation of peripheral blood lymphocyte apoptosis in rheumatoid arthritis - a potential role for heat shock protein 70. Moodley D, etal., J Inflamm (Lond). 2011 Nov 3;8(1):30.
18. The dual behavior of heat shock protein 70 and asymmetric dimethylarginine in relation to serum CRP levels in type 2 diabetes. Nakhjavani M, etal., Gene. 2012 Feb 13.
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. Chaperoning of glucocorticoid receptors. Pratt WB, etal., Handb Exp Pharmacol. 2006;(172):111-38.
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PMID:9488468   PMID:12145311   PMID:12857439   PMID:12870667   PMID:14688209   PMID:15033773   PMID:15540463   PMID:15644312   PMID:15744251   PMID:15877948   PMID:16116448   PMID:16254606  
PMID:16291818   PMID:16297314   PMID:16297316   PMID:16472926   PMID:16710168   PMID:16731649   PMID:16781812   PMID:16854843   PMID:17103089   PMID:17278880   PMID:17441510   PMID:17552876  
PMID:17640624   PMID:17763949   PMID:18087244   PMID:18159002   PMID:18178852   PMID:18182047   PMID:18280260   PMID:18316783   PMID:18388575   PMID:18446816   PMID:18528785   PMID:18534054  
PMID:18601975   PMID:18644837   PMID:18668351   PMID:18759001   PMID:18856196   PMID:19095035   PMID:19182904   PMID:19208651   PMID:19244585   PMID:19268660   PMID:19333137   PMID:19352207  
PMID:19401463   PMID:19543852   PMID:19570893   PMID:19785543   PMID:19788071   PMID:19897899   PMID:20083167   PMID:20137302   PMID:20426530   PMID:20458337   PMID:20465949   PMID:20559625  
PMID:20971094   PMID:21097414   PMID:21109264   PMID:21231916   PMID:21276792   PMID:21356360   PMID:21391123   PMID:21439793   PMID:21499258   PMID:21515294   PMID:21913551   PMID:21941782  
PMID:21953294   PMID:22022600   PMID:22039956   PMID:22082260   PMID:22132083   PMID:22156356   PMID:22350213   PMID:22438294   PMID:22505291   PMID:22513040   PMID:22526757   PMID:22683596  
PMID:22871113   PMID:23064900   PMID:23315814   PMID:23356498   PMID:23479759   PMID:23612524   PMID:23965991   PMID:24141017   PMID:24496673   PMID:25002582   PMID:25412361   PMID:25470523  
PMID:25535743   PMID:25571843   PMID:26053851   PMID:26165998   PMID:26279425   PMID:26316108   PMID:26874210   PMID:26903063   PMID:27009470   PMID:27169499   PMID:27216364   PMID:28368329  
PMID:29037410   PMID:29374537   PMID:29476059   PMID:32357304   PMID:32917949   PMID:35456946   PMID:37200358   PMID:37865085   PMID:38597327  
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Hspa4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81037,908,866 - 37,951,994 (-)NCBIGRCr8
mRatBN7.21037,408,025 - 37,449,080 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1037,408,025 - 37,449,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1042,101,220 - 42,141,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01041,591,248 - 41,631,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01037,094,962 - 37,135,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01038,601,624 - 38,642,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,601,624 - 38,642,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,383,101 - 38,424,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,705,629 - 38,749,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11038,712,058 - 38,755,488 (-)NCBI
Celera1036,756,477 - 36,796,741 (-)NCBICelera
Cytogenetic Map10q22NCBI
HSPA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385133,052,013 - 133,106,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5133,052,013 - 133,106,449 (+)EnsemblGRCh38hg38GRCh38
GRCh375132,387,705 - 132,442,141 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365132,415,561 - 132,468,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 345132,415,560 - 132,468,608NCBI
Celera5128,517,326 - 128,569,460 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5127,579,243 - 127,632,290 (+)NCBIHuRef
CHM1_15131,820,919 - 131,874,036 (+)NCBICHM1_1
T2T-CHM13v2.05133,562,175 - 133,626,191 (+)NCBIT2T-CHM13v2.0
Hspa4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,150,641 - 53,191,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,150,641 - 53,191,284 (-)EnsemblGRCm39 Ensembl
GRCm381153,259,814 - 53,300,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,259,814 - 53,300,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,073,316 - 53,113,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,104,997 - 53,143,812 (-)NCBIMGSCv36mm8
Celera1157,839,531 - 57,880,195 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.91NCBI
Hspa4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554084,379,825 - 4,423,381 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554084,379,825 - 4,422,710 (+)NCBIChiLan1.0ChiLan1.0
HSPA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24128,358,202 - 128,410,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15126,497,801 - 126,552,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05128,463,186 - 128,517,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15134,619,076 - 134,673,658 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5134,619,076 - 134,673,658 (+)Ensemblpanpan1.1panPan2
HSPA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,290,603 - 21,363,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,290,621 - 21,505,122 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1120,116,763 - 20,164,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,073,430 - 22,146,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,073,445 - 22,146,281 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,814,567 - 20,862,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,662,175 - 20,709,970 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,304,890 - 21,352,758 (+)NCBIUU_Cfam_GSD_1.0
Hspa4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213115,084,886 - 115,130,573 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366472,087,604 - 2,133,355 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366472,087,650 - 2,133,343 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2135,345,867 - 135,391,108 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12135,345,724 - 135,391,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,866,335 - 140,911,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,862,817 - 35,917,490 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,862,814 - 35,918,287 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,023,595 - 42,078,723 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,021,738 - 39,068,132 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,022,511 - 39,068,153 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Hspa4
135 total Variants

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir1rno-miR-1-3pMirtarbaseexternal_infoqRT-PCR//Western blotFunctional MTI17715156

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:141
Interacting mature miRNAs:167
Transcripts:ENSRNOT00000023628
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat

1 to 10 of 54 rows
AW535242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21037,427,084 - 37,427,272 (+)MAPPERmRatBN7.2
Rnor_6.01038,620,867 - 38,621,054NCBIRnor6.0
Rnor_5.01038,402,344 - 38,402,531UniSTSRnor5.0
RGSC_v3.41038,726,246 - 38,726,433UniSTSRGSC3.4
Celera1036,775,119 - 36,775,306UniSTS
RH 3.4 Map10403.4UniSTS
Cytogenetic Map10q22UniSTS
RH65703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21037,419,445 - 37,420,560 (+)MAPPERmRatBN7.2
Rnor_6.01038,613,230 - 38,614,344NCBIRnor6.0
Rnor_5.01038,394,707 - 38,395,821UniSTSRnor5.0
RGSC_v3.41038,717,051 - 38,718,165UniSTSRGSC3.4
Cytogenetic Map10q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000023628   ⟹   ENSRNOP00000023628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1037,408,025 - 37,449,001 (-)Ensembl
Rnor_6.0 Ensembl1038,601,624 - 38,642,397 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094819   ⟹   ENSRNOP00000082426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1037,408,025 - 37,449,001 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111861   ⟹   ENSRNOP00000091981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1037,408,025 - 37,439,941 (-)Ensembl
RefSeq Acc Id: NM_153629   ⟹   NP_705893
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81037,908,866 - 37,949,835 (-)NCBI
mRatBN7.21037,408,025 - 37,449,001 (-)NCBI
Rnor_6.01038,601,624 - 38,642,397 (-)NCBI
Rnor_5.01038,383,101 - 38,424,016 (-)NCBI
RGSC_v3.41038,705,629 - 38,749,058 (-)RGD
Celera1036,756,477 - 36,796,741 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085314   ⟹   XP_038941242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81037,908,866 - 37,951,994 (-)NCBI
mRatBN7.21037,409,756 - 37,449,080 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_705893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941242 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27937 (Get FASTA)   NCBI Sequence Viewer  
  EDM04372 (Get FASTA)   NCBI Sequence Viewer  
  EDM04373 (Get FASTA)   NCBI Sequence Viewer  
  EDM04374 (Get FASTA)   NCBI Sequence Viewer  
  EDM04375 (Get FASTA)   NCBI Sequence Viewer  
  EDM04376 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023628
GenBank Protein O88600 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_705893   ⟸   NM_153629
- UniProtKB: O88600 (UniProtKB/Swiss-Prot),   F1LRV4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023628   ⟸   ENSRNOT00000023628
RefSeq Acc Id: XP_038941242   ⟸   XM_039085314
- Peptide Label: isoform X1
- UniProtKB: F1LRV4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082426   ⟸   ENSRNOT00000094819
Ensembl Acc Id: ENSRNOP00000091981   ⟸   ENSRNOT00000111861

Name Modeler Protein Id AA Range Protein Structure
AF-O88600-F1-model_v2 AlphaFold O88600 1-840 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697173
Promoter ID:EPDNEW_R7697
Type:initiation region
Name:Hspa4_1
Description:heat shock protein family A member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01038,642,420 - 38,642,480EPDNEW


1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-25149 BioCyc
Ensembl Genes ENSRNOG00000016596 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000023628 ENTREZGENE
Gene3D-CATH 1.20.1270.10 UniProtKB/Swiss-Prot
  3.30.30.30 UniProtKB/Swiss-Prot
  3.30.420.40 UniProtKB/Swiss-Prot
  Actin, Chain A, domain 4 UniProtKB/Swiss-Prot
  Substrate Binding Domain Of DNAk, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro ATPase_NBD UniProtKB/Swiss-Prot
  Heat_shock_70_CS UniProtKB/Swiss-Prot
  HSP70_C_sf UniProtKB/Swiss-Prot
  HSP70_peptide-bd_sf UniProtKB/Swiss-Prot
  Hsp_70_fam UniProtKB/Swiss-Prot
  HSPA4_NBD UniProtKB/Swiss-Prot
KEGG Report rno:266759 UniProtKB/Swiss-Prot
NCBI Gene 266759 ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 4 UniProtKB/Swiss-Prot
  HSC70CB, ISOFORM G-RELATED UniProtKB/Swiss-Prot
Pfam HSP70 UniProtKB/Swiss-Prot
PhenoGen Hspa4 PhenoGen
PRINTS HEATSHOCK70 UniProtKB/Swiss-Prot
PROSITE HSP70_2 UniProtKB/Swiss-Prot
  HSP70_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016596 RatGTEx
Superfamily-SCOP SSF100920 UniProtKB/Swiss-Prot
  SSF100934 UniProtKB/Swiss-Prot
  SSF53067 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTY1_RAT UniProtKB/TrEMBL
  A0A8I6AGA6_RAT UniProtKB/TrEMBL
  A6HEB7_RAT UniProtKB/TrEMBL
  A6HEB8_RAT UniProtKB/TrEMBL
  A6HEB9_RAT UniProtKB/TrEMBL
  A6HEC1_RAT UniProtKB/TrEMBL
  F1LRV4 ENTREZGENE, UniProtKB/TrEMBL
  HSP74_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Hspa4  heat shock protein family A (Hsp70) member 4  Hspa4  heat shock protein family A member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-25 Hspa4  heat shock protein family A member 4  Hspa4  heat shock protein 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Hspa4  heat shock protein 4    heat shock 70 kDa protein 4  Name updated 1299863 APPROVED
2003-02-27 Hspa4  heat shock 70 kDa protein 4      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_regulation expression is increased following exposure to elevated temperatures 633151