HSPA4 (heat shock protein family A (Hsp70) member 4) - Rat Genome Database

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Gene: HSPA4 (heat shock protein family A (Hsp70) member 4) Sus scrofa
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Symbol: HSPA4
Name: heat shock protein family A (Hsp70) member 4
RGD ID: 14277069
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN kidney development (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of DNA binding (ortholog); PARTICIPATES IN cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Brain Injuries (ortholog); Chagas disease (ortholog); FOUND IN lipid droplet (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock 70 kDa protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2135,345,867 - 135,391,108 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12135,345,724 - 135,391,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,866,335 - 140,911,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSPA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2135,345,867 - 135,391,108 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12135,345,724 - 135,391,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,866,335 - 140,911,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385133,052,013 - 133,106,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5133,052,013 - 133,106,449 (+)EnsemblGRCh38hg38GRCh38
GRCh375132,387,705 - 132,442,141 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365132,415,561 - 132,468,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 345132,415,560 - 132,468,608NCBI
Celera5128,517,326 - 128,569,460 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5127,579,243 - 127,632,290 (+)NCBIHuRef
CHM1_15131,820,919 - 131,874,036 (+)NCBICHM1_1
T2T-CHM13v2.05133,562,175 - 133,626,191 (+)NCBIT2T-CHM13v2.0
Hspa4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,150,641 - 53,191,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,150,641 - 53,191,284 (-)EnsemblGRCm39 Ensembl
GRCm381153,259,814 - 53,300,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,259,814 - 53,300,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,073,316 - 53,113,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,104,997 - 53,143,812 (-)NCBIMGSCv36mm8
Celera1157,839,531 - 57,880,195 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.91NCBI
Hspa4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81037,908,866 - 37,951,994 (-)NCBIGRCr8
mRatBN7.21037,408,025 - 37,449,080 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1037,408,025 - 37,449,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1042,101,220 - 42,141,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01041,591,248 - 41,631,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01037,094,962 - 37,135,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01038,601,624 - 38,642,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,601,624 - 38,642,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,383,101 - 38,424,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,705,629 - 38,749,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11038,712,058 - 38,755,488 (-)NCBI
Celera1036,756,477 - 36,796,741 (-)NCBICelera
Cytogenetic Map10q22NCBI
Hspa4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554084,379,825 - 4,423,381 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554084,379,825 - 4,422,710 (+)NCBIChiLan1.0ChiLan1.0
HSPA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24128,358,202 - 128,410,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15126,497,801 - 126,552,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05128,463,186 - 128,517,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15134,619,076 - 134,673,658 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5134,619,076 - 134,673,658 (+)Ensemblpanpan1.1panPan2
HSPA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,290,603 - 21,363,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,290,621 - 21,505,122 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1120,116,763 - 20,164,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,073,430 - 22,146,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,073,445 - 22,146,281 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,814,567 - 20,862,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,662,175 - 20,709,970 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,304,890 - 21,352,758 (+)NCBIUU_Cfam_GSD_1.0
Hspa4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213115,084,886 - 115,130,573 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366472,087,604 - 2,133,355 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366472,087,650 - 2,133,343 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,862,817 - 35,917,490 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,862,814 - 35,918,287 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,023,595 - 42,078,723 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,021,738 - 39,068,132 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,022,511 - 39,068,153 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSPA4
1133 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 3 3 5 2 23 2 3 3
Low 1
Below cutoff

Sequence


RefSeq Acc Id: XM_005661654   ⟹   XP_005661711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12135,345,724 - 135,391,112 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005661711   ⟸   XM_005661654
- UniProtKB: A0A4X1UY89 (UniProtKB/TrEMBL),   F1RI15 (UniProtKB/TrEMBL),   A0A8D1PLM7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014292 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008342 UniProtKB/TrEMBL
  ENSSSCG00015054751 UniProtKB/TrEMBL
  ENSSSCG00025051835 UniProtKB/TrEMBL
  ENSSSCG00030018997 UniProtKB/TrEMBL
  ENSSSCG00035017105 UniProtKB/TrEMBL
  ENSSSCG00040019843 UniProtKB/TrEMBL
  ENSSSCG00045029565 UniProtKB/TrEMBL
  ENSSSCG00050074260 UniProtKB/TrEMBL
  ENSSSCG00055004045 UniProtKB/TrEMBL
  ENSSSCG00060057809 UniProtKB/TrEMBL
  ENSSSCG00065025859 UniProtKB/TrEMBL
  ENSSSCG00070020296 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015615.5 UniProtKB/TrEMBL
  ENSSSCT00000047672.3 UniProtKB/TrEMBL
  ENSSSCT00000075742.2 UniProtKB/TrEMBL
  ENSSSCT00000078822 ENTREZGENE
  ENSSSCT00000078822.2 UniProtKB/TrEMBL
  ENSSSCT00005013703.1 UniProtKB/TrEMBL
  ENSSSCT00005013771.1 UniProtKB/TrEMBL
  ENSSSCT00005013829.1 UniProtKB/TrEMBL
  ENSSSCT00005013881.1 UniProtKB/TrEMBL
  ENSSSCT00015072921.1 UniProtKB/TrEMBL
  ENSSSCT00015073114.1 UniProtKB/TrEMBL
  ENSSSCT00025070871.1 UniProtKB/TrEMBL
  ENSSSCT00025071105.1 UniProtKB/TrEMBL
  ENSSSCT00030026250.1 UniProtKB/TrEMBL
  ENSSSCT00035021939.1 UniProtKB/TrEMBL
  ENSSSCT00035021943.1 UniProtKB/TrEMBL
  ENSSSCT00040026795.1 UniProtKB/TrEMBL
  ENSSSCT00040026844.1 UniProtKB/TrEMBL
  ENSSSCT00045050796.1 UniProtKB/TrEMBL
  ENSSSCT00045051086.1 UniProtKB/TrEMBL
  ENSSSCT00050101660.1 UniProtKB/TrEMBL
  ENSSSCT00055007959.1 UniProtKB/TrEMBL
  ENSSSCT00055007971.1 UniProtKB/TrEMBL
  ENSSSCT00055007990.1 UniProtKB/TrEMBL
  ENSSSCT00060078786.1 UniProtKB/TrEMBL
  ENSSSCT00060078819.1 UniProtKB/TrEMBL
  ENSSSCT00065034707.1 UniProtKB/TrEMBL
  ENSSSCT00070040275.1 UniProtKB/TrEMBL
  ENSSSCT00070040314.1 UniProtKB/TrEMBL
  ENSSSCT00070040319.1 UniProtKB/TrEMBL
  ENSSSCT00070040322.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/TrEMBL
  3.30.30.30 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
  HSPA4_NBD UniProtKB/TrEMBL
  ZCCHC10 UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report ssc:100524853 UniProtKB/TrEMBL
NCBI Gene HSPA4 ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 4 UniProtKB/TrEMBL
  HSC70CB, ISOFORM G-RELATED UniProtKB/TrEMBL
  PTHR13491 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
  zf-CCHC_3 UniProtKB/TrEMBL
PRINTS HEATSHOCK70 UniProtKB/TrEMBL
PROSITE HSP70_2 UniProtKB/TrEMBL
  HSP70_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF100920 UniProtKB/TrEMBL
  SSF100934 UniProtKB/TrEMBL
  SSF53067 UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
UniProt A0A287B6J6_PIG UniProtKB/TrEMBL
  A0A4X1UWJ9_PIG UniProtKB/TrEMBL
  A0A4X1UY51_PIG UniProtKB/TrEMBL
  A0A4X1UY89 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R0T1_PIG UniProtKB/TrEMBL
  A0A8D0IE60_PIG UniProtKB/TrEMBL
  A0A8D0LGH0_PIG UniProtKB/TrEMBL
  A0A8D0P7L3_PIG UniProtKB/TrEMBL
  A0A8D1PLM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y8A4_PIG UniProtKB/TrEMBL
  F1RI15 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2RBW3 UniProtKB/TrEMBL
VGNC ID VGNC:111098 ENTREZGENE