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Gene: Pomgnt1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) Rattus norvegicus

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Symbol:

Pomgnt1

Name:

protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)

RGD ID:

1359396

Description:

Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within several processes, including nervous system development; protein O-linked mannosylation; and reactive gliosis. Predicted to be located in membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94463; O-linked mannose beta1,2-N-acetylglucosaminyltransferase; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI		GRCr8
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,250,551 - 132,260,368 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,005,138 - 134,014,956 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,027,575 - 134,037,392 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,007,343 - 135,017,220 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,434,604 - 136,444,480 (+)	NCBI
Celera	5	128,162,654 - 128,172,461 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	Gliosis		ISO	RGD:1553166	11532765		RGD
Pomgnt1	Rat	lissencephaly		ISO	RGD:1601994	11065022	DNA:frameshift mutations, missense mutations, deletion:exon, intron:multiple	RGD
Pomgnt1	Rat	muscular dystrophy		ISO	RGD:1601994	1599152	DNA:missense mutations, nonsense mutation, snp:exons, intron:multiple (human)	RGD
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	11532772	DNA:missense mutations, nonsense mutation: :multiple	RGD
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	11065512	DNA:deletions, splice-site mutation:exon, intron:multiple	RGD
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	1554293	DNA:missense mutations, splice-site mutations, deletions: :multiple	RGD
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	11071487	DNA:missense mutations:exon:p.R265H (935G>A), p.R311Q (1037G>A), p.C442R (1465C>T) (human)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	autism spectrum disorder		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:25741868
Pomgnt1	Rat	autosomal recessive limb-girdle muscular dystrophy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Autosomal recessive limb-girdle muscular dystrophy \| ClinVar Annotator: match by more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:15236414\|PMID:15466003\|PMID:15938569\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17559086\|PMID:17869517\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18330676\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:21361872\|PMID:21447391\|PMID:22323514\|PMID:22522420\|PMID:23326386\|PMID:23689641\|PMID:23894383\|PMID:24731844\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:28424332\|PMID:28492532\|PMID:28765568\|PMID:29302074\|PMID:30961548\|PMID:31066047\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:32404165\|PMID:33144682\|PMID:33200426
Pomgnt1	Rat	autosomal recessive limb-girdle muscular dystrophy type 2O		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Autosomal recessive limb-girdle muscular dystrophy type 2O \| ClinVar Annotator: more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12788071\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:15938569\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17154333\|PMID:17559086\|PMID:17576681\|PMID:17869517\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:22323514\|PMID:22419172\|PMID:22522420\|PMID:22554691\|PMID:22819665\|PMID:22995991\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:23894383\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:24731844\|PMID:24733390\|PMID:25326635\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25640679\|PMID:25741868\|PMID:25987458\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28765568\|PMID:28832562\|PMID:29096039\|PMID:29302074\|PMID:29555514\|PMID:30937090\|PMID:30961548\|PMID:31066047\|PMID:31069529\|PMID:3123072\|PMID:31230720\|PMID:31589614\|PMID:31872526\|PMID:31964843\|PMID:31980526\|PMID:32115343\|PMID:32404165\|PMID:33077954\|PMID:33144682\|PMID:33175337\|PMID:33200426\|PMID:33413009\|PMID:34324503\|PMID:34426522\|PMID:35846108\|PMID:36819107\|PMID:36964972\|PMID:9536098
Pomgnt1	Rat	Charcot-Marie-Tooth disease dominant intermediate C		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate C	ClinVar	PMID:28492532
Pomgnt1	Rat	congenital muscular dystrophy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Congenital Muscular Dystrophy, alpha-dystroglycan related \| ClinVar Annotator: match by more ...	ClinVar	PMID:17878207\|PMID:18195152\|PMID:18691338\|PMID:19067344\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21727005\|PMID:22995991\|PMID:24033266\|PMID:24123366\|PMID:25326635\|PMID:25333069\|PMID:25741868\|PMID:26467025\|PMID:27884173\|PMID:28492532
Pomgnt1	Rat	congenital muscular dystrophy-dystroglycanopathy type A		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Congenital muscular alpha-dystroglycanopathy with brain and eye anomalies	ClinVar	PMID:11709191\|PMID:12588800\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17559086\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:19299310\|PMID:20816175\|PMID:21447391\|PMID:22323514\|PMID:23326386\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26908613\|PMID:26990548\|PMID:27391550\|PMID:27604308\|PMID:28492532\|PMID:30961548\|PMID:31589614\|PMID:31980526\|PMID:33144682
Pomgnt1	Rat	congenital muscular dystrophy-dystroglycanopathy type A3		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies, type A3 more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12788071\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:15938569\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17154333\|PMID:17559086\|PMID:17576681\|PMID:17869517\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:21983716\|PMID:22323514\|PMID:22522420\|PMID:22554691\|PMID:22995991\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:23894383\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:24731844\|PMID:24733390\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28832562\|PMID:29302074\|PMID:29555514\|PMID:30961548\|PMID:31066047\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:32404165\|PMID:33144682\|PMID:33200426\|PMID:34324503\|PMID:36819107\|PMID:36964972\|PMID:9536098
Pomgnt1	Rat	developmental and epileptic encephalopathy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
Pomgnt1	Rat	early infantile epileptic encephalopathy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532
Pomgnt1	Rat	fundus dystrophy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Retinal dystrophy	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17559086\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:19299310\|PMID:20816175\|PMID:21361872\|PMID:21447391\|PMID:22323514\|PMID:22819665\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:24033266\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:28492532\|PMID:29096039\|PMID:29302074\|PMID:30937090\|PMID:30961548\|PMID:31066047\|PMID:3123072\|PMID:31230720\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:32404165\|PMID:33144682\|PMID:33200426\|PMID:34426522
Pomgnt1	Rat	genetic disease		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:15466003\|PMID:17576681\|PMID:19299310\|PMID:20816175\|PMID:21447391\|PMID:22323514\|PMID:22554691\|PMID:22819665\|PMID:25741868\|PMID:26467025\|PMID:26908613\|PMID:27391550\|PMID:27493216\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:29096039\|PMID:29555514\|PMID:33413009\|PMID:9536098
Pomgnt1	Rat	hydrocephalus		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Hydrocephalus	ClinVar	PMID:25741868
Pomgnt1	Rat	intellectual disability		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:17878207\|PMID:25741868\|PMID:28492532\|PMID:36964972
Pomgnt1	Rat	limb-girdle muscular dystrophy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Limb-girdle muscular dystrophy	ClinVar
Pomgnt1	Rat	Muscle Hypotonia		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Hypotonia	ClinVar
Pomgnt1	Rat	muscular dystrophy-dystroglycanopathy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Congenital muscular dystrophy due to dystroglycanopathy \| ClinVar Annotator: match more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12788071\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:15938569\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17154333\|PMID:17559086\|PMID:17576681\|PMID:17869517\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:22323514\|PMID:22522420\|PMID:22554691\|PMID:22819665\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:23894383\|PMID:24282183\|PMID:24731844\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28832562\|PMID:29096039\|PMID:29302074\|PMID:29555514\|PMID:30937090\|PMID:30961548\|PMID:31066047\|PMID:31069529\|PMID:31230720\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:32404165\|PMID:33144682\|PMID:33175337\|PMID:33200426\|PMID:34324503\|PMID:34426522\|PMID:36964972\|PMID:9536098
Pomgnt1	Rat	muscular dystrophy-dystroglycanopathy type B3		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: MUSCULAR DYSTROPHY, CONGENITAL, POMGNT1-RELATED	ClinVar	PMID:11709191\|PMID:12588800\|PMID:15236414\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17559086\|PMID:17576681\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:22323514\|PMID:22554691\|PMID:22995991\|PMID:23326386\|PMID:23689641\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:24731844\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28832562\|PMID:29555514\|PMID:30937090\|PMID:30961548\|PMID:31069529\|PMID:3123072\|PMID:31230720\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:33144682\|PMID:34324503\|PMID:34426522\|PMID:9536098
Pomgnt1	Rat	muscular dystrophy-dystroglycanopathy type B6		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy type B6	ClinVar	PMID:17878207\|PMID:25741868\|PMID:28492532\|PMID:36964972
Pomgnt1	Rat	Nervous System Malformations		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Abnormality of the nervous system	ClinVar	PMID:25741868
Pomgnt1	Rat	optic atrophy		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Optic atrophy	ClinVar	PMID:25741868\|PMID:28492532
Pomgnt1	Rat	phenylketonuria		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Phenylketonuria	ClinVar	PMID:25741868
Pomgnt1	Rat	retinitis pigmentosa 76		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa 76	ClinVar	PMID:11709191\|PMID:12588800\|PMID:15236414\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17559086\|PMID:17576681\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:22323514\|PMID:22554691\|PMID:22995991\|PMID:23326386\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28832562\|PMID:29555514\|PMID:30961548\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:33144682\|PMID:34324503\|PMID:36819107\|PMID:9536098
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Muscle eye brain disease \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12788071\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17154333\|PMID:17559086\|PMID:17576681\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:21983716\|PMID:22323514\|PMID:22522420\|PMID:22554691\|PMID:22995991\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:24731844\|PMID:24733390\|PMID:25326635\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:26990548\|PMID:27391550\|PMID:27493216\|PMID:27604308\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28765568\|PMID:28832562\|PMID:29302074\|PMID:29555514\|PMID:30937090\|PMID:30961548\|PMID:31066047\|PMID:31230720\|PMID:31589614\|PMID:31964843\|PMID:31980526\|PMID:32404165\|PMID:33144682\|PMID:33175337\|PMID:33200426\|PMID:34324503\|PMID:34426522\|PMID:9536098
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	8554872	ClinVar Annotator: match by term: Muscle eye brain disease \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:11709191\|PMID:12588800\|PMID:12788071\|PMID:12849864\|PMID:15236414\|PMID:15466003\|PMID:16199547\|PMID:16427280\|PMID:17030669\|PMID:17154333\|PMID:17559086\|PMID:17576681\|PMID:17878207\|PMID:17881266\|PMID:17906881\|PMID:18195152\|PMID:18330676\|PMID:18691338\|PMID:19067344\|PMID:19299310\|PMID:19679478\|PMID:20215985\|PMID:20816175\|PMID:20981092\|PMID:21228398\|PMID:21361872\|PMID:21447391\|PMID:21727005\|PMID:21983716\|PMID:22323514\|PMID:22522420\|PMID:22554691\|PMID:22995991\|PMID:23326386\|PMID:23453855\|PMID:23689641\|PMID:24033266\|PMID:24123366\|PMID:24282183\|PMID:24731844\|PMID:24733390\|PMID:25326635\|PMID:25333069\|PMID:25390965\|PMID:25525159\|PMID:25741868\|PMID:26013959\|PMID:26467025\|PMID:26908613\|PMID:26938784\|PMID:27391550\|PMID:27493216\|PMID:27884173\|PMID:28424332\|PMID:28492532\|PMID:28688748\|PMID:28765568\|PMID:28832562\|PMID:29302074\|PMID:30937090\|PMID:30961548\|PMID:31066047\|PMID:32404165\|PMID:33175337\|PMID:33200426\|PMID:34324503\|PMID:9536098

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	Walker-Warburg syndrome		ISO	RGD:1601994	11554173	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	muscular dystrophy-dystroglycanopathy type B1		ISS	RGD:1601994	13592920	OMIM:613151 \| OMIM:613152 \| OMIM:613155 \| OMIM:613156 \| OMIM:615351 \| OMIM:616094	MouseDO
Pomgnt1	Rat	Walker-Warburg syndrome		ISS	RGD:1553166	13592920		MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	autosomal recessive limb-girdle muscular dystrophy type 2O		ISO	RGD:1601994	7240710		OMIM
Pomgnt1	Rat	congenital muscular dystrophy-dystroglycanopathy type A3		ISO	RGD:1601994	7240710		OMIM
Pomgnt1	Rat	muscular dystrophy-dystroglycanopathy type B3		ISO	RGD:1601994	7240710		OMIM
Pomgnt1	Rat	retinitis pigmentosa 76		ISO	RGD:1601994	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1553166	6480464	1,2-Dimethylhydrazine results in increased expression of POMGNT1 mRNA	CTD	PMID:22206623
Pomgnt1	Rat	17alpha-ethynylestradiol	affects expression	ISO	RGD:1553166	6480464	Ethinyl Estradiol affects the expression of POMGNT1 mRNA	CTD	PMID:17555576
Pomgnt1	Rat	17beta-estradiol	increases expression	ISO	RGD:1601994	6480464	Estradiol results in increased expression of POMGNT1 mRNA	CTD	PMID:19167446
Pomgnt1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1553166	6480464	Tetrachlorodibenzodioxin results in increased expression of POMGNT1 mRNA	CTD	PMID:15328365
Pomgnt1	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1553166	6480464	[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression more ...	CTD	PMID:25975270
Pomgnt1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1553166	6480464	Tetrachlorodibenzodioxin affects the expression of POMGNT1 mRNA	CTD	PMID:18343893\|PMID:21570461
Pomgnt1	Rat	2,3,7,8-Tetrachlorodibenzofuran	affects expression	ISO	RGD:1553166	6480464	2,3,7,8-tetrachlorodibenzofuran affects the expression of POMGNT1 mRNA	CTD	PMID:18343893
Pomgnt1	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2,4-dinitrotoluene affects the expression of POMGNT1 mRNA	CTD	PMID:21346803
Pomgnt1	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	RGD:1553166	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of POMGNT1 mRNA	CTD	PMID:20188158
Pomgnt1	Rat	3,4-methylenedioxymethamphetamine	decreases expression	EXP		6480464	N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of POMGNT1 mRNA	CTD	PMID:30071829
Pomgnt1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1553166	6480464	bisphenol S results in decreased expression of POMGNT1 mRNA	CTD	PMID:39298647
Pomgnt1	Rat	4-amino-2,6-dinitrotoluene	affects expression	EXP		6480464	4-amino-2,6-dinitrotoluene affects the expression of POMGNT1 mRNA	CTD	PMID:21346803
Pomgnt1	Rat	acrylamide	decreases expression	ISO	RGD:1601994	6480464	Acrylamide results in decreased expression of POMGNT1 mRNA	CTD	PMID:32763439
Pomgnt1	Rat	aflatoxin B1	increases methylation	ISO	RGD:1601994	6480464	Aflatoxin B1 results in increased methylation of POMGNT1 gene	CTD	PMID:27153756
Pomgnt1	Rat	atrazine	decreases expression	ISO	RGD:1601994	6480464	Atrazine results in decreased expression of POMGNT1 mRNA	CTD	PMID:22378314
Pomgnt1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1601994	6480464	Benzo(a)pyrene affects the methylation of POMGNT1 3' UTR	CTD	PMID:27901495
Pomgnt1	Rat	bisphenol A	decreases expression	ISO	RGD:1601994	6480464	bisphenol A results in decreased expression of POMGNT1 mRNA	CTD	PMID:25047013
Pomgnt1	Rat	bisphenol A	increases expression	ISO	RGD:1553166	6480464	bisphenol A results in increased expression of POMGNT1 mRNA	CTD	PMID:32156529\|PMID:33221593
Pomgnt1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of POMGNT1 mRNA	CTD	PMID:30816183\|PMID:32528016\|PMID:34947998
Pomgnt1	Rat	bisphenol A	decreases methylation	ISO	RGD:1553166	6480464	bisphenol A results in decreased methylation of POMGNT1 promoter	CTD	PMID:27312807
Pomgnt1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of POMGNT1 mRNA	CTD	PMID:25181051
Pomgnt1	Rat	cadmium atom	multiple interactions	ISO	RGD:1601994	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of POMGNT1 more ...	CTD	PMID:35301059
Pomgnt1	Rat	cadmium dichloride	multiple interactions	ISO	RGD:1601994	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of POMGNT1 more ...	CTD	PMID:35301059
Pomgnt1	Rat	choline	multiple interactions	ISO	RGD:1553166	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ...	CTD	PMID:20938992
Pomgnt1	Rat	cisplatin	increases expression	ISO	RGD:1601994	6480464	Cisplatin results in increased expression of POMGNT1 mRNA	CTD	PMID:27392435
Pomgnt1	Rat	cisplatin	multiple interactions	ISO	RGD:1601994	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of POMGNT1 mRNA	CTD	PMID:27392435
Pomgnt1	Rat	cocaine	affects expression	EXP		6480464	Cocaine affects the expression of POMGNT1 mRNA	CTD	PMID:20187946
Pomgnt1	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1601994	6480464	Copper Sulfate results in decreased expression of POMGNT1 mRNA	CTD	PMID:19549813
Pomgnt1	Rat	cyclosporin A	decreases expression	ISO	RGD:1601994	6480464	Cyclosporine results in decreased expression of POMGNT1 mRNA	CTD	PMID:25562108
Pomgnt1	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1601994	6480464	di-n-butylphosphoric acid affects the expression of POMGNT1 mRNA	CTD	PMID:37042841
Pomgnt1	Rat	epoxiconazole	decreases expression	ISO	RGD:1553166	6480464	epoxiconazole results in decreased expression of POMGNT1 mRNA	CTD	PMID:35436446
Pomgnt1	Rat	ethanol	affects expression	ISO	RGD:1553166	6480464	Ethanol affects the expression of POMGNT1 mRNA	CTD	PMID:30319688
Pomgnt1	Rat	folic acid	multiple interactions	ISO	RGD:1553166	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ...	CTD	PMID:20938992
Pomgnt1	Rat	folic acid	decreases expression	ISO	RGD:1553166	6480464	Folic Acid results in decreased expression of POMGNT1 mRNA	CTD	PMID:25629700
Pomgnt1	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of POMGNT1 mRNA	CTD	PMID:33387578
Pomgnt1	Rat	L-methionine	multiple interactions	ISO	RGD:1553166	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ...	CTD	PMID:20938992
Pomgnt1	Rat	N-methyl-4-phenylpyridinium	increases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in increased expression of POMGNT1 mRNA	CTD	PMID:28801915
Pomgnt1	Rat	paracetamol	affects expression	ISO	RGD:1553166	6480464	Acetaminophen affects the expression of POMGNT1 mRNA	CTD	PMID:17562736
Pomgnt1	Rat	paracetamol	increases expression	ISO	RGD:1601994	6480464	Acetaminophen results in increased expression of POMGNT1 mRNA	CTD	PMID:22230336
Pomgnt1	Rat	paracetamol	decreases expression	ISO	RGD:1601994	6480464	Acetaminophen results in decreased expression of POMGNT1 mRNA	CTD	PMID:21420995
Pomgnt1	Rat	phenobarbital	affects expression	ISO	RGD:1601994	6480464	Phenobarbital affects the expression of POMGNT1 mRNA	CTD	PMID:19159669
Pomgnt1	Rat	tamoxifen	affects expression	ISO	RGD:1553166	6480464	Tamoxifen affects the expression of POMGNT1 mRNA	CTD	PMID:17555576
Pomgnt1	Rat	thiram	decreases expression	ISO	RGD:1601994	6480464	Thiram results in decreased expression of POMGNT1 mRNA	CTD	PMID:38568856
Pomgnt1	Rat	triptonide	increases expression	ISO	RGD:1553166	6480464	triptonide results in increased expression of POMGNT1 mRNA	CTD	PMID:33045310
Pomgnt1	Rat	valproic acid	affects expression	ISO	RGD:1553166	6480464	Valproic Acid affects the expression of POMGNT1 mRNA	CTD	PMID:17292431
Pomgnt1	Rat	valproic acid	decreases expression	ISO	RGD:1553166	6480464	Valproic Acid results in decreased expression of POMGNT1 mRNA	CTD	PMID:20546886
Pomgnt1	Rat	valproic acid	affects expression	ISO	RGD:1601994	6480464	Valproic Acid affects the expression of POMGNT1 mRNA	CTD	PMID:25979313
Pomgnt1	Rat	zoledronic acid	increases expression	ISO	RGD:1601994	6480464	zoledronic acid results in increased expression of POMGNT1 mRNA	CTD	PMID:20977926

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	basement membrane organization	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	basement membrane organization	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521 PMID:21970971	RGD	PMID:21970971
Pomgnt1	Rat	biological_process		ND		1598407	09/2016: no relevant rat data	RGD
Pomgnt1	Rat	brain development	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:5052171 PMID:26306834	RGD	PMID:26306834
Pomgnt1	Rat	brain development	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	dentate gyrus development	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521 PMID:21970971	RGD	PMID:21970971
Pomgnt1	Rat	dentate gyrus development	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	gene expression	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	gene expression	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521\|MGI:3832592 PMID:21129441, PMID:22270369, PMID:32453729	RGD	PMID:21129441\|PMID:22270369\|PMID:32453729
Pomgnt1	Rat	localization of cell	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:5052171 PMID:26306834	RGD	PMID:26306834
Pomgnt1	Rat	localization of cell	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	myelination	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	myelination	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3832592 PMID:32453729	RGD	PMID:32453729
Pomgnt1	Rat	O-glycan processing	involved_in	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	O-glycan processing	involved_in	IBA	PANTHER:PTN000825782\|UniProtKB:Q8WZA1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pomgnt1	Rat	O-glycan processing	involved_in	ISO	RGD:1601994	1624291	PMID:27493216	RGD	PMID:27493216
Pomgnt1	Rat	O-glycan processing	involved_in	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Pomgnt1	Rat	protein glycosylation	involved_in	IEA	UniPathway:UPA00378	1600115	GO_REF:0000041	UniProt	GO_REF:0000041
Pomgnt1	Rat	protein glycosylation	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	protein glycosylation	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521\|MGI:3832592 PMID:22728091, PMID:32453729	RGD	PMID:22728091\|PMID:32453729
Pomgnt1	Rat	protein glycosylation	involved_in	IEA	InterPro:IPR004139	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pomgnt1	Rat	protein O-linked glycosylation	involved_in	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Pomgnt1	Rat	protein O-linked glycosylation	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	protein O-linked glycosylation	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521 PMID:16458488	RGD	PMID:16458488
Pomgnt1	Rat	protein O-linked glycosylation	acts_upstream_of_or_within	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	protein O-linked glycosylation	acts_upstream_of_or_within	ISO	RGD:1601994	1624291	PMID:11709191	RGD	PMID:11709191
Pomgnt1	Rat	protein O-linked glycosylation	involved_in	ISO	RGD:1601994	1624291	PMID:26908613, PMID:27391550	RGD	PMID:26908613\|PMID:27391550
Pomgnt1	Rat	protein O-linked mannosylation	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521 PMID:21460210	RGD	PMID:21460210
Pomgnt1	Rat	protein O-linked mannosylation	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	reactive gliosis	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3623521 PMID:21970971	RGD	PMID:21970971
Pomgnt1	Rat	reactive gliosis	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	sensory perception of sound	acts_upstream_of_or_within	ISO	RGD:1553166	1624291	MGI:3832592 PMID:32453729	RGD	PMID:32453729
Pomgnt1	Rat	sensory perception of sound	acts_upstream_of_or_within	IEA	UniProtKB:Q91X88\|ensembl:ENSMUSP00000112751	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pomgnt1	Rat	Golgi membrane	is_active_in	IBA	PANTHER:PTN000825782\|UniProtKB:Q8WZA1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pomgnt1	Rat	Golgi membrane	located_in	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	Golgi membrane	located_in	IEA	UniRule:UR001590773	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pomgnt1	Rat	Golgi membrane	located_in	ISO	RGD:1601994	1624291	PMID:17034757	RGD	PMID:17034757
Pomgnt1	Rat	Golgi membrane	located_in	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Pomgnt1	Rat	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pomgnt1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pomgnt1	Rat	membrane	located_in	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	membrane	located_in	ISO	RGD:1601994	1624291	PMID:27493216	RGD	PMID:27493216
Pomgnt1	Rat	membrane	located_in	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	acetylglucosaminyltransferase activity	enables	IEA	UniRule:UR001590773	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pomgnt1	Rat	acetylglucosaminyltransferase activity	enables	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	acetylglucosaminyltransferase activity	enables	IEA	InterPro:IPR004139	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pomgnt1	Rat	acetylglucosaminyltransferase activity	enables	ISO	RGD:1601994	1624291	PMID:26908613, PMID:27391550, PMID:27493216	RGD	PMID:26908613\|PMID:27391550\|PMID:27493216
Pomgnt1	Rat	acetylglucosaminyltransferase activity	enables	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Pomgnt1	Rat	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	enables	IEA	UniRule:UR001590773	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pomgnt1	Rat	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	enables	ISO	RGD:1601994	1624291	PMID:11742540	RGD	PMID:11742540
Pomgnt1	Rat	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	enables	IBA	PANTHER:PTN000825782\|UniProtKB:Q8WZA1	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pomgnt1	Rat	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	enables	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	carbohydrate binding	enables	IEA	UniRule:UR001922981	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pomgnt1	Rat	carbohydrate binding	enables	IEA	UniProtKB-KW:KW-0430	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pomgnt1	Rat	glycosyltransferase activity	enables	IEA	UniProtKB-KW:KW-0328	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pomgnt1	Rat	manganese ion binding	enables	IEA	UniRule:UR001590773	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pomgnt1	Rat	manganese ion binding	enables	ISO	RGD:1601994	1624291	PMID:27493216	RGD	PMID:27493216
Pomgnt1	Rat	manganese ion binding	enables	IEA	UniProtKB:Q8WZA1\|ensembl:ENSP00000361052	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pomgnt1	Rat	manganese ion binding	enables	ISS	UniProtKB:Q8WZA1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Pomgnt1	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pomgnt1	Rat	protein binding	enables	ISO	RGD:1601994	1624291	UniProtKB:O75072\|UniProtKB:P04233-2\|UniProtKB:Q5JRM2\|UniProtKB:Q8N5K1\|UniProtKB:Q8TBB1\|UniProtKB:Q96Q45-2\|UniProtKB:Q9H5K3\|UniProtKB:Q9Y282\|UniProtKB:Q9Y2B1 PMID:17034757, PMID:25416956, PMID:28514442, PMID:29892012, PMID:32296183, PMID:32707033, PMID:33961781	RGD	PMID:17034757\|PMID:25416956\|PMID:28514442\|PMID:29892012\|PMID:32296183\|PMID:32707033\|PMID:33961781
Pomgnt1	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pomgnt1	Rat	O-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00514

BioCyc Pathways

protein O-mannosylation II (mammals, core M1 and core M2)

#	Reference Title	Reference Citation
1.	POMGnT1 mutations in congenital muscular dystrophy: genotype-phenotype correlation and expanded clinical spectrum.	Biancheri R, etal., Arch Neurol. 2006 Oct;63(10):1491-5.
2.	Molecular heterogeneity in fetal forms of type II lissencephaly.	Bouchet C, etal., Hum Mutat. 2007 Oct;28(10):1020-7.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Novel POMGnT1 mutations cause muscle-eye-brain disease in Chinese patients.	Jiao H, etal., Mol Genet Genomics. 2013 Aug;288(7-8):297-308. doi: 10.1007/s00438-013-0749-5. Epub 2013 May 21.
5.	Breaches of the pial basement membrane are associated with defective dentate gyrus development in mouse models of congenital muscular dystrophies.	Li J, etal., Neurosci Lett. 2011 Nov 7;505(1):19-24. doi: 10.1016/j.neulet.2011.09.040. Epub 2011 Sep 29.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Novel POMGNT1 point mutations and intragenic rearrangements associated with muscle-eye-brain disease.	Saredi S, etal., J Neurol Sci. 2012 Jul 15;318(1-2):45-50. doi: 10.1016/j.jns.2012.04.008. Epub 2012 May 2.
14.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15.	POMGnT1 gene alterations in a family with neurological abnormalities.	Vervoort VS, etal., Ann Neurol. 2004 Jul;56(1):143-8.
16.	Muscular dystrophy and neuronal migration disorder caused by mutations in a glycosyltransferase, POMGnT1.	Yoshida A, etal., Dev Cell 2001 Nov;1(5):717-24.

PMID:11742540	PMID:15489334	PMID:16458488	PMID:17034757	PMID:26908613	PMID:27391550	PMID:27493216

Pomgnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI		GRCr8
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,250,551 - 132,260,368 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,005,138 - 134,014,956 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,027,575 - 134,037,392 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,007,343 - 135,017,220 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,434,604 - 136,444,480 (+)	NCBI
Celera	5	128,162,654 - 128,172,461 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

POMGNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	46,188,683 - 46,220,305 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	46,188,683 - 46,220,305 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,654,355 - 46,685,977 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	46,426,940 - 46,436,708 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	44,941,643 - 44,973,721 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,769,330 - 44,801,277 (-)	NCBI		HuRef
CHM1_1	1	46,771,477 - 46,803,118 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	46,065,903 - 46,097,522 (-)	NCBI		T2T-CHM13v2.0

Pomgnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,007,700 - 116,017,041 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	115,981,037 - 116,017,046 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,150,498 - 116,159,844 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,123,840 - 116,159,849 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	115,823,123 - 115,832,449 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	115,648,457 - 115,657,776 (+)	NCBI		MGSCv36	mm8
Celera	4	114,888,693 - 114,898,002 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.1	NCBI

Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,077,406 - 12,086,700 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,076,815 - 12,086,961 (+)	NCBI	ChiLan1.0	ChiLan1.0

POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	180,584,412 - 180,616,625 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	179,726,026 - 179,758,221 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	45,494,834 - 45,525,804 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,849,528 - 46,859,137 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,849,528 - 46,859,137 (-)	Ensembl	panpan1.1		panPan2

POMGNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,176,932 - 14,187,181 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,178,357 - 14,187,161 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,299,079 - 14,309,089 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,329,378 - 14,339,540 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,329,801 - 14,339,540 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,130,602 - 14,140,611 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,199,089 - 14,209,095 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,268,643 - 14,278,728 (+)	NCBI		UU_Cfam_GSD_1.0

Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	61,404,486 - 61,417,843 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	27,229,113 - 27,239,123 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	27,229,262 - 27,239,034 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POMGNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	165,212,833 - 165,222,409 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	165,212,828 - 165,222,412 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	152,692,300 - 152,701,877 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POMGNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	86,588,049 - 86,597,576 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	86,588,550 - 86,599,107 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	30,389,152 - 30,398,705 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pomgnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	2,119,684 - 2,135,656 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	2,120,759 - 2,131,024 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Pomgnt1
39 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	66
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000035312
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128071929	134724733	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	128033842	133011550	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

MARC_7377-7378:992008389:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	129,639,150 - 129,639,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,012,219 - 135,012,603	NCBI	Rnor6.0
Rnor_5.0	5	138,796,111 - 138,796,495	UniSTS	Rnor5.0
RGSC_v3.4	5	136,434,255 - 136,434,639	UniSTS	RGSC3.4
Celera	5	128,167,462 - 128,167,846	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001007747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035312 ⟹ ENSRNOP00000035825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,301 - 129,644,015 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098939 ⟹ ENSRNOP00000091939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101655 ⟹ ENSRNOP00000093130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107786 ⟹ ENSRNOP00000088565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,635,186 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108219 ⟹ ENSRNOP00000084795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109490 ⟹ ENSRNOP00000095021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,635,186 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115433 ⟹ ENSRNOP00000093579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

RefSeq Acc Id:

NM_001007747 ⟹ NP_001007748

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,870,989 - 134,880,864 (+)	NCBI
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI
Rnor_6.0	5	135,007,343 - 135,017,218 (+)	NCBI
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	RGD
Celera	5	128,162,654 - 128,172,461 (+)	RGD

Sequence:

show sequence

ATGGAGGAGGCGGAGGCCGCGGAGACCGCGGCGCGCGGGGCCGAGCTGTACGGGCCCGAGCGCGGCCCGAGCGGGGCCGGGGGCCCCTGAGCCTCCCCTCAGATTCCTGAAGTCATGGACTGGCCGGG
ACAGGGGTGATTCCCTAATCCAGTATGGATGACTGGAAGCCTAGTCCCCTCATCAAGCCCTTTGGGGCTAGGAAGAAACGGAGCTGGTATCTTACCTGGAAGTATAAACTGACAAACCAGCGGGCCCT
GCGAAGATTCTGTCAGACAGGAGCTGTGCTTTTCCTGCTGGTGACTGTCATTGTGAACATCAAGTTGATCCTAGACACTCGGAGAGCCATCAGCGAGGCCAATGAAGACCCTGAACCAGAGCAAGACT
ACGATGAGGCCCTAGGACGCTTAGAGTCCCCTCGGCACAGAGGCAGCAGTCCCCGACGCGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCGGTAGATGGCACTACGGTGCTA
GAGGATGAGGCCCGGGAGCAGGGCCGAGGCATCCATGTCATCGTCCTCAACCAGGCCACGGGCCACGTGATGGCAAAGCGTGTGTTTGACACGTACTCTCCTCATGAGGATGAGGCCATGGTGCTATT
CCTCAACATGGTGGCGCCCGGCCGTGTACTGATCTGCACAGTTAAGGATGAGGGCTCCTTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGCCAGGCAGGCCCTGCCCTTGGCT
GGAGGGACACCTGGGCCTTCGTGGGACGAAAAGGAGGTCCTGTTCTTGGCGAGAAGCATTCTAAATCTCCTGCCCTCTCCTCCTGGGGTGACCCAGTCCTGCTGAAGACAGATGTGCCACTCAGCTCA
GCTGAAGAGGCTGAGTGTCACTGGGCAGATACAGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTCGAGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCAACACCTATTGAGTTCAGCCC
TGACCCACTTCCAGACAATAAAGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAATTACCTGTACAGGATGCTGCGCTCTCTGCTGTCAGCCCAAGGGGTATCTCCACAGATGATAA
CAGTCTTCATTGATGGCTACTATGAGGAGCCAATGGATGTGGTGGCACTGTTTGGTCTGAGAGGCATCCAGCACACTCCCATCAGCATCAAGAACGCCCGTGTGTCTCAGCACTACAAGGCCAGCCTC
ACTGCCACTTTCAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCTGGAAGAGGACCTGGACATCGCTGTGGACTTTTTCAGTTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGATGACAGCCT
GTACTGCATCTCTGCTTGGAATGACCAGGGGTATGAACACACAGCTGAGGATCCAGCACTACTGTACCGTGTGGAGACCATGCCTGGGTTGGGATGGGTGCTCAGGAAATCTCTATACAAGGAGGAGC
TTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGACTGGGACATGTGGATGCGGATGCCGGAACAGCGCCGTGGCCGTGAGTGCATCATCCCGGATGTTTCCCGATCCTACCACTTTGGCATCGTG
GGCCTCAACATGAATGGCTACTTTCATGAGGCCTACTTCAAGAAGCACAAGTTCAACACAGTCCCAGGTGTCCAGCTCAGGAATGTAGACAGTCTGAAGAAAGAAGCTTATGAAGTGGAAATTCACAG
GCTGCTCAGTGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACACAGAGGGCCATACCTATGTGGCATTTATCCGGATGGAGAAAGATGATGACTTCACCACCT
GGACTCAGCTTGCCAAGTGCCTCCACATTTGGGATCTGGACGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCA
GTGAAGAAGCCACCCTCAGTCACCCCTATTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCCCAGGGGCTGCTGAACAAACATGAAGTCTCCTCCAGGACCCTGCAGGGCTGGGTACTGTGTACCC
CCAGACAGGCTAGCCCATTGCCCTATCCTGTAGGATTTTTGTAGATGCCGGTAGGGGTTAGGGCTGGTTTGTTTTTAACATGGGATTTAATTACTAACTCTAAGGGGAAGGATCCCCTGCTCCAACAC
CCCTATTCCTGAGTTTAAGGTCTATTTATTTACTTCCTTGTTGAAGAAGAGCAGGAGGGTTCCCAGGCCCTCTTTGGGATCCCTGGGTAGCTGATCCACTCTTTACACCCCGTCCTCCCAGGCCTGGC
TCAGAACCTATTTATTGACTGTCCCGAGGGCCTTGGGAATAGGCCCAACCTGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACTCAGGAAAACTGCTGTGCC
CAGCTGATGGACAGGCCCGTTCAGGGTCCATGTGCTGACAGACTCACTCAGAGACCTTTAGACACTGGACCAGGCCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAGCTGGACAAAGATGATCA
TTGATTAAAAAAGGAGAAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238683 ⟹ XP_006238745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,871,821 - 134,880,864 (+)	NCBI
mRatBN7.2	5	129,635,091 - 129,644,150 (+)	NCBI
Rnor_6.0	5	135,008,072 - 135,017,220 (+)	NCBI
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI

Sequence:

show sequence

CCACGTGTCCCAAAAGCTGGCTTCCTAACTTTACCCTAACATAGACTATGAACTAACTACCTTG
GCTACCAAGAAGAGGCAGCAAATTCCTGGAGGGGAAGCCTCTGTGTGTTGTGGCCTTCTCAGTCAGTGTTTTAGACCCAGGATTCTGGAATCAGAACCCAACTCTGACCTCCTAAGCATCAAACACAA
ACCGGAAGTCTGGTCAGGCTGGCTTTGCCCCTGACACCCAACTGTCAGGCAGTGTGGCCTACATTCTTCTGTGACTTCCGATTATCCACCGTGGGTCTCAGATCCTAAATCTATCTCAAAGAACTAGT
TATGGAGGGGAGCAAAGAAGCCAAAGACTCAAATGGGAGAGTACAAGACCACTCGACAGGAGCTGTGCTTTTCCTGCTGGTGACTGTCATTGTGAACATCAAGTTGATCCTAGACACTCGGAGAGCCA
TCAGCGAGGCCAATGAAGACCCTGAACCAGAGCAAGACTACGATGAGGCCCTAGGACGCTTAGAGTCCCCTCGGCACAGAGGCAGCAGTCCCCGACGCGTGCTGGATGTGGAAGTATACTCCAGTAGA
AGCAAAGTGTATGTGGCGGTAGATGGCACTACGGTGCTAGAGGATGAGGCCCGGGAGCAGGGCCGAGGCATCCATGTCATCGTCCTCAACCAGGCCACGGGCCACGTGATGGCAAAGCGTGTGTTTGA
CACGTACTCTCCTCATGAGGATGAGGCCATGGTGCTATTCCTCAACATGGTGGCGCCCGGCCGTGTACTGATCTGCACAGTTAAGGATGAGGGCTCCTTCCACCTCAAGGACACAGCAAAGGCTCTGC
TGAGGAGCCTGGGAAGCCAGGCAGGCCCTGCCCTTGGCTGGAGGGACACCTGGGCCTTCGTGGGACGAAAAGGAGGTCCTGTTCTTGGCGAGAAGCATTCTAAATCTCCTGCCCTCTCCTCCTGGGGT
GACCCAGTCCTGCTGAAGACAGATGTGCCACTCAGCTCAGCTGAAGAGGCTGAGTGTCACTGGGCAGATACAGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTCGAGGGCTACGGGAGCGT
GTGCAGCTGCAAGGACCCAACACCTATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAAGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAATTACCTGTACAGGATGCTGCGCT
CTCTGCTGTCAGCCCAAGGGGTATCTCCACAGATGATAACAGTCTTCATTGATGGCTACTATGAGGAGCCAATGGATGTGGTGGCACTGTTTGGTCTGAGAGGCATCCAGCACACTCCCATCAGCATC
AAGAACGCCCGTGTGTCTCAGCACTACAAGGCCAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCTGGAAGAGGACCTGGACATCGCTGTGGACTTTTTCAGTTTCCT
GAGCCAGTCCATCCACCTGCTGGAGGAAGATGACAGCCTGTACTGCATCTCTGCTTGGAATGACCAGGGGTATGAACACACAGCTGAGGATCCAGCACTACTGTACCGTGTGGAGACCATGCCTGGGT
TGGGATGGGTGCTCAGGAAATCTCTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGACTGGGACATGTGGATGCGGATGCCGGAACAGCGCCGTGGCCGTGAGTGCATC
ATCCCGGATGTTTCCCGATCCTACCACTTTGGCATCGTGGGCCTCAACATGAATGGCTACTTTCATGAGGCCTACTTCAAGAAGCACAAGTTCAACACAGTCCCAGGTGTCCAGCTCAGGAATGTAGA
CAGTCTGAAGAAAGAAGCTTATGAAGTGGAAATTCACAGGCTGCTCAGTGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACACAGAGGGCCATACCTATGTGG
CATTTATCCGGATGGAGAAAGATGATGACTTCACCACCTGGACTCAGCTTGCCAAGTGCCTCCACATTTGGGATCTGGACGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGAAC
CACTTTTTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCAGTGAAGAAGCCACCCTCAGTCACCCCTATTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCCCAGGGGCTGCTGAACAAACATGAAG
TCTCCTCCAGGACCCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCATTGCCCTATCCTGTAGGATTTTTGTAGATGCCGGTAGGGGTTAGGGCTGGTTTGTTTTTAACATGGGATTTA
ATTACTAACTCTAAGGGGAAGGATCCCCTGCTCCAACACCCCTATTCCTGAGTTTAAGGTCTATTTATTTACTTCCTTGTTGAAGAAGAGCAGGAGGGTTCCCAGGCCCTCTTTGGGATCCCTGGGTA
GCTGATCCACTCTTTACACCCCGTCCTCCCAGGCCTGGCTCAGAACCTATTTATTGACTGTCCCGAGGGCCTTGGGAATAGGCCCAACCTGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTG
AGGGTGGGACTGGCTCATACTCAGGAAAACTGCTGTGCCCAGCTGATGGACAGGCCCGTTCAGGGTCCATGTGCTGACAGACTCACTCAGAGACCTTTAGACACTGGACCAGGCCTCCTCTTAGCCTT
CTCTTTGTCCAGATTTCCAAAGCTGGACAAAGATGATCATTGATTAAAAAAGGAGAAAACCTGGG

hide sequence

RefSeq Acc Id:

XM_063287979 ⟹ XP_063144049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI


Protein RefSeqs	NP_001007748	(Get FASTA)	NCBI Sequence Viewer
	XP_006238745	(Get FASTA)	NCBI Sequence Viewer
	XP_063144049	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83641	(Get FASTA)	NCBI Sequence Viewer
	EDL90286	(Get FASTA)	NCBI Sequence Viewer
	EDL90287	(Get FASTA)	NCBI Sequence Viewer
	EDL90288	(Get FASTA)	NCBI Sequence Viewer
	EDL90289	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035825
	ENSRNOP00000095021
GenBank Protein	Q5XIN7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007748 ⟸ NM_001007747

- UniProtKB:

Q5XIN7 (UniProtKB/Swiss-Prot), A0A8L2QK62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDDWKPSPLIKPFGARKKRSWYLTWKYKLTNQRALRRFCQTGAVLFLLVTVIVNIKLILDTRRAISEANEDPEPEQDYDEALGRLESPRHRGSSPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQG
RGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVLGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHW
ADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMITVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFP
EAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRKSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYF
HEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEIHRLLSEAEVLDHSKDPCEDSFLPDTEGHTYVAFIRMEKDDDFTTWTQLAKCLHIWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVT
PIFLEPPPKEEGAPGAAEQT

hide sequence

RefSeq Acc Id:	XP_006238745 ⟸ XM_006238683
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMP8 (UniProtKB/TrEMBL), A6JZ66 (UniProtKB/TrEMBL), A0A8L2QK62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGSKEAKDSNGRVQDHSTGAVLFLLVTVIVNIKLILDTRRAISEANEDPEPEQDYDEALGRLE SPRHRGSSPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVG RKGGPVLGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHWADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMITVFIDGYYE EPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFPEAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRKSLYKEELEPKWPTPE KLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEIHRLLSEAEVLDHSKDPCEDSFLPDTEGHTYVAFIRMEKDDDFTTWTQLAKCLH IWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVTPIFLEPPPKEEGAPGAAEQT hide sequence

Ensembl Acc Id:

ENSRNOP00000035825 ⟸ ENSRNOT00000035312

Ensembl Acc Id:

ENSRNOP00000093130 ⟸ ENSRNOT00000101655

Ensembl Acc Id:

ENSRNOP00000095021 ⟸ ENSRNOT00000109490

Protein Domains

GG-type lectin ILEI/PANDER

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIN7-F1-model_v2	AlphaFold	Q5XIN7	1-660	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13693930

Promoter ID:

EPDNEW_R4455

Type:

initiation region

Name:

Pomgnt1_1

Description:

protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta1,2-)

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	135,007,329 - 135,007,389	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-40263	BioCyc
BioCyc Pathway	PWY-7922 [protein O-mannosylation II (mammals, core M1 and core M2)]	BioCyc
BioCyc Pathway Image	PWY-7922	BioCyc
Ensembl Genes	ENSRNOG00000023455	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000035312	ENTREZGENE
	ENSRNOT00000109490	ENTREZGENE
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134894	IMAGE-MGC_LOAD
InterPro	Glyco_trans_13	UniProtKB/Swiss-Prot
	ILEI/PANDER_dom	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
	O-linked_mannose_GnT	UniProtKB/Swiss-Prot
	POMGNT1_PANDER-like	UniProtKB/Swiss-Prot
KEGG Report	rno:362567	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94463	IMAGE-MGC_LOAD
NCBI Gene	362567	ENTREZGENE
PANTHER	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	UniProtKB/Swiss-Prot
Pfam	GNT-I	UniProtKB/Swiss-Prot
	ILEI	UniProtKB/Swiss-Prot
PhenoGen	Pomgnt1	PhenoGen
PROSITE	GG_LECTIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000023455	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniProt	A0A8I6A0W0_RAT	UniProtKB/TrEMBL
	A0A8I6AB13_RAT	UniProtKB/TrEMBL
	A0A8I6AGM8_RAT	UniProtKB/TrEMBL
	A0A8I6AHV0_RAT	UniProtKB/TrEMBL
	A0A8I6AJ46_RAT	UniProtKB/TrEMBL
	A0A8I6AMP8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QK62	ENTREZGENE, UniProtKB/TrEMBL
	A6JZ64_RAT	UniProtKB/TrEMBL
	A6JZ65_RAT	UniProtKB/TrEMBL
	A6JZ66	ENTREZGENE, UniProtKB/TrEMBL
	A6JZ67_RAT	UniProtKB/TrEMBL
	PMGT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-14	Pomgnt1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	MGC94463	O-linked mannose beta1,2-N-acetylglucosaminyltransferase	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94463	O-linked mannose beta1,2-N-acetylglucosaminyltransferase			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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