POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) - Rat Genome Database
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Gene: POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) Sus scrofa
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Symbol: POMGNT1
Name: protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
RGD ID: 13863439
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity (inferred); manganese ion binding (inferred); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); FOUND IN Golgi membrane (inferred); integral component of Golgi membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: N-acetylglucosaminyltransferase I.2; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,212,833 - 165,222,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,692,300 - 152,701,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
POMGNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,212,833 - 165,222,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,692,300 - 152,701,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMGNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl146,188,682 - 46,220,305 (-)EnsemblGRCh38hg38GRCh38
GRCh38146,188,683 - 46,220,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37146,654,355 - 46,685,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,426,940 - 46,436,708 (-)NCBINCBI36hg18NCBI36
Celera144,941,643 - 44,973,721 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef144,769,330 - 44,801,277 (-)NCBIHuRef
CHM1_1146,771,477 - 46,803,118 (-)NCBICHM1_1
Pomgnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBImm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
Pomgnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25129,634,274 - 129,644,150 (+)NCBI
Rnor_6.0 Ensembl5135,007,343 - 135,017,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,007,343 - 135,017,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05138,791,235 - 138,801,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,429,379 - 136,439,254 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15136,434,604 - 136,444,480 (+)NCBI
Celera5128,162,654 - 128,172,461 (+)NCBICelera
Cytogenetic Map5q35NCBI
Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,077,406 - 12,086,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,076,815 - 12,086,961 (+)NCBIChiLan1.0ChiLan1.0
POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1146,849,528 - 46,859,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,849,528 - 46,859,137 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0145,494,834 - 45,525,804 (-)NCBIMhudiblu_PPA_v0panPan3
POMGNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1514,178,357 - 14,187,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11514,176,932 - 14,187,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647427,229,262 - 27,239,034 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,588,049 - 86,597,576 (+)NCBI
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)Ensembl
Pomgnt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249062,120,759 - 2,131,024 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2
Low 7 4 3 5 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000022714   ⟹   ENSSSCP00000025649
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,212,833 - 165,222,406 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061107   ⟹   ENSSSCP00000045060
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,212,837 - 165,222,406 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067755   ⟹   ENSSSCP00000062614
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,212,875 - 165,222,409 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071886   ⟹   ENSSSCP00000074532
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,212,838 - 165,222,409 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089448   ⟹   ENSSSCP00000063526
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,212,833 - 165,217,157 (+)Ensembl
RefSeq Acc Id: NM_001078669   ⟹   NP_001072137
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,213,430 - 165,222,412 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005665452   ⟹   XP_005665509
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013999419   ⟹   XP_013854873
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,212,842 - 165,222,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093615   ⟹   XP_020949274
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,212,841 - 165,222,406 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001072137 (Get FASTA)   NCBI Sequence Viewer  
  XP_005665509 (Get FASTA)   NCBI Sequence Viewer  
  XP_013854873 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949274 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAF03222 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005665509   ⟸   XM_005665452
- Peptide Label: isoform X3
- UniProtKB: F1S3V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949274   ⟸   XM_021093615
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013854873   ⟸   XM_013999419
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001072137   ⟸   NM_001078669
- UniProtKB: Q0KKC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063526   ⟸   ENSSSCT00000089448
RefSeq Acc Id: ENSSSCP00000045060   ⟸   ENSSSCT00000061107
RefSeq Acc Id: ENSSSCP00000025649   ⟸   ENSSSCT00000022714
RefSeq Acc Id: ENSSSCP00000074532   ⟸   ENSSSCT00000071886
RefSeq Acc Id: ENSSSCP00000062614   ⟸   ENSSSCT00000067755
Protein Domains
ILEI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029145 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070029986 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000025649 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000045060 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000062614 UniProtKB/TrEMBL
  ENSSSCP00000063526 UniProtKB/TrEMBL
  ENSSSCP00000074532 UniProtKB/TrEMBL
  ENSSSCP00070051361 UniProtKB/TrEMBL
  ENSSSCP00070051364 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022714 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000061107 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000067755 UniProtKB/TrEMBL
  ENSSSCT00000071886 UniProtKB/TrEMBL
  ENSSSCT00000089448 UniProtKB/TrEMBL
  ENSSSCT00070060282 UniProtKB/TrEMBL
  ENSSSCT00070060286 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Glyco_trans_13 UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  POMGNT1_PANDER-like UniProtKB/TrEMBL
KEGG Report ssc:780413 UniProtKB/TrEMBL
NCBI Gene POMGNT1 ENTREZGENE
Pfam GNT-I UniProtKB/TrEMBL
  ILEI UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A287AMB9_PIG UniProtKB/TrEMBL
  A0A4X1W4T8_PIG UniProtKB/TrEMBL
  A0A4X1WAD9_PIG UniProtKB/TrEMBL
  A0A5G2QI03_PIG UniProtKB/TrEMBL
  A0A5G2QWQ7_PIG UniProtKB/TrEMBL
  A0A5G2RDF8_PIG UniProtKB/TrEMBL
  F1S3V2 ENTREZGENE, UniProtKB/TrEMBL
  Q0KKC1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98536 ENTREZGENE