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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:selenoamino acid metabolic pathway
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Accession:PW:0000133 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of selenoamino acids - amino acids in which a selenium atom replaces a sulfur atom. Examples include selenocysteine, selenohomocysteine and selenomethionine.
Synonyms:related_synonym: Selenoamino acid metabolism;   selenocompound metabolic pathway



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selenoamino acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase ISO SMPDB SMP:00029 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
G Cbs cystathionine beta synthase ISO SMPDB SMP:00029 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cth cystathionine gamma-lyase IEA
ISO
KEGG
SMPDB
SMP:00029 rno:00450 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO SMPDB SMP:00029 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Inmt indolethylamine N-methyltransferase IEA KEGG rno:00450 NCBI chr 4:84,318,197...84,322,493
Ensembl chr 4:84,318,197...84,322,493
JBrowse link
G Kyat1 kynurenine aminotransferase 1 IEA KEGG rno:00450 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
G Kyat3 kynurenine aminotransferase 3 IEA KEGG rno:00450 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 IEA
ISO
KEGG
SMPDB
SMP:00029 rno:00450 NCBI chr 7:63,121,142...63,138,550
Ensembl chr 7:63,121,142...63,138,495
JBrowse link
G Mars2 methionyl-tRNA synthetase 2, mitochondrial IEA KEGG rno:00450 NCBI chr 9:56,720,408...56,729,991
Ensembl chr 9:56,720,983...56,723,820
JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00029 NCBI chr 4:104,489,877...104,495,447
Ensembl chr 4:104,488,466...104,495,493
JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB SMP:00029 NCBI chr10:25,106,928...25,122,982
Ensembl chr10:25,106,930...25,122,777
JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine ISO SMPDB SMP:00029 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IEA KEGG rno:00450 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 IEA
ISO
KEGG
SMPDB
SMP:00029 rno:00450 NCBI chr 2:220,040,343...220,114,399
Ensembl chr 2:220,040,312...220,114,395
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 IEA KEGG rno:00450 NCBI chr 1:230,454,314...230,539,332
Ensembl chr 1:230,454,426...230,539,331
JBrowse link
G Scly selenocysteine lyase IEA
ISO
KEGG
SMPDB
SMP:00029 rno:00450 NCBI chr 9:91,890,269...91,910,947
Ensembl chr 9:91,890,306...91,910,941
JBrowse link
G Sephs1 selenophosphate synthetase 1 IEA KEGG rno:00450 NCBI chr17:73,354,435...73,382,803
Ensembl chr17:73,356,530...73,382,593
JBrowse link
G Sephs2 selenophosphate synthetase 2 IEA
ISO
KEGG
SMPDB
SMP:00029 rno:00450 NCBI chr 1:181,893,146...181,895,464
Ensembl chr 1:181,892,599...181,895,497
JBrowse link
G Txnrd1 thioredoxin reductase 1 IEA KEGG rno:00450 NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863
JBrowse link
G Txnrd2 thioredoxin reductase 2 IEA KEGG rno:00450 NCBI chr11:82,519,996...82,568,156
Ensembl chr11:82,519,999...82,568,156
JBrowse link
G Txnrd3 thioredoxin reductase 3 IEA KEGG rno:00450 NCBI chr 4:122,072,548...122,112,493
Ensembl chr 4:122,072,548...122,112,491
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    classic metabolic pathway 1854
      metabolic pathway of other amino acids 141
        selenoamino acid metabolic pathway 21
          selenocysteine biosynthetic pathway 0
paths to the root