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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:avitaminosis pathway
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Accession:PW:0001584 term browser browse the term
Definition:Those conditions caused by inadequate levels of one or more essential vitamins due to defects in their metabolism.
Synonyms:exact_synonym: avitaminosis disease pathway


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hereditary folate malabsorption pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 ISO SMPDB SMP:00724 NCBI chr20:52,722...99,180
Ensembl chr20:61,349...99,160 		JBrowse link
G DHFR dihydrofolate reductase ISO SMPDB SMP:00724 NCBI chr 3:26,521,214...26,556,065 JBrowse link
G FPGS folylpolyglutamate synthase ISO SMPDB SMP:00724 NCBI chr 9:55,590,092...55,612,639
Ensembl chr 9:55,585,970...55,599,028 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase ISO SMPDB SMP:00724 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715 		JBrowse link
G GGH gamma-glutamyl hydrolase ISO SMPDB SMP:00724 NCBI chr29:13,143,881...13,165,028
Ensembl chr29:13,134,232...13,165,028 		JBrowse link
G MTFMT mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00724 NCBI chr30:29,388,600...29,415,578
Ensembl chr30:29,388,649...29,450,430 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO SMPDB SMP:00724 NCBI chr 8:38,831,672...38,889,607
Ensembl chr 8:38,831,860...38,889,453 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO SMPDB SMP:00724 NCBI chr 1:41,316,247...41,495,226
Ensembl chr 1:41,309,419...41,495,216 		JBrowse link
G MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO SMPDB SMP:00724 NCBI chr17:48,882,838...48,896,816
Ensembl chr17:48,883,724...48,941,949 		JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO SMPDB SMP:00724 NCBI chr 2:84,445,526...84,457,435
Ensembl chr 2:84,380,919...84,536,818 		JBrowse link
G MTHFS methenyltetrahydrofolate synthetase ISO SMPDB SMP:00724 NCBI chr 3:57,480,935...57,514,836 JBrowse link
G SLC46A1 solute carrier family 46 member 1 ISO SMPDB SMP:00724 NCBI chr 9:42,638,670...42,650,241
Ensembl chr 9:42,643,328...42,650,188 		JBrowse link
vitamin A deficiency pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO SMPDB SMP:00336 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO SMPDB SMP:00336 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G AWAT1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00336 NCBI chr  X:54,678,459...54,684,666
Ensembl chr  X:54,622,317...54,684,231 		JBrowse link
G BCO1 beta-carotene oxygenase 1 ISO SMPDB SMP:00336 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017 		JBrowse link
G CPNE6 copine 6 ISO SMPDB SMP:00336 NCBI chr 8:4,046,532...4,058,498
Ensembl chr 8:4,046,544...4,084,744 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 ISO SMPDB SMP:00336 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370 		JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A polypeptide 13 ISO SMPDB SMP:00336 NCBI chr 1:112,932,246...112,938,248
Ensembl chr 1:112,931,985...112,938,350 		JBrowse link
G CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 ISO SMPDB SMP:00336 NCBI chr 1:112,900,508...112,906,745
Ensembl chr 1:112,900,403...112,907,076 		JBrowse link
G CYP2B6 cytochrome P450 2B11 ISO SMPDB SMP:00336 NCBI chr 1:112,817,561...112,833,294
Ensembl chr 1:112,816,502...112,833,293 		JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 ISO SMPDB SMP:00336 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00336 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 ISO SMPDB SMP:00336 NCBI chr 2:83,826,361...83,865,412
Ensembl chr 2:83,826,374...83,865,426 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO SMPDB SMP:00336 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179 		JBrowse link
G DNAJB11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00336 NCBI chr34:19,182,850...19,202,229
Ensembl chr34:19,182,400...19,202,238 		JBrowse link
G ERP29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00336 NCBI chr26:9,608,352...9,616,711
Ensembl chr26:9,608,399...9,616,338 		JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00336 NCBI chr15:42,456,793...42,474,122
Ensembl chr15:42,456,764...42,579,311 		JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00336 NCBI chr 9:57,850,870...57,855,607
Ensembl chr 9:57,850,922...57,855,257 		JBrowse link
G HYOU1 hypoxia up-regulated 1 ISO SMPDB SMP:00336 NCBI chr 5:14,795,750...14,808,203
Ensembl chr 5:14,795,750...14,807,262 		JBrowse link
G LOC100856533 alcohol dehydrogenase E chain ISO SMPDB SMP:00336 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LRAT lecithin retinol acyltransferase ISO SMPDB SMP:00336 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176 		JBrowse link
G PDIA2 protein disulfide isomerase family A member 2 ISO SMPDB SMP:00336 NCBI chr 6:40,218,566...40,221,924
Ensembl chr 6:40,218,550...40,231,402 		JBrowse link
G PDIA4 protein disulfide isomerase family A member 4 ISO SMPDB SMP:00336 NCBI chr16:1,797,537...1,818,877
Ensembl chr16:1,797,552...1,818,251 		JBrowse link
G PDIA6 protein disulfide isomerase family A member 6 ISO SMPDB SMP:00336 NCBI chr17:7,653,834...7,674,136
Ensembl chr17:7,654,175...7,685,999 		JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00336 NCBI chr  X:4,775,702...4,925,027
Ensembl chr  X:4,874,240...4,924,976 		JBrowse link
G PPIB peptidylprolyl isomerase B ISO SMPDB SMP:00336 NCBI chr30:28,654,193...28,660,129
Ensembl chr30:28,654,200...28,788,801 		JBrowse link
G RDH11 retinol dehydrogenase 11 ISO SMPDB SMP:00336 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576 		JBrowse link
G RDH12 retinol dehydrogenase 12 ISO SMPDB SMP:00336 NCBI chr 8:41,685,045...41,696,120
Ensembl chr 8:41,684,996...41,695,447 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO SMPDB SMP:00336 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453 		JBrowse link
G RDH8 retinol dehydrogenase 8 ISO SMPDB SMP:00336 NCBI chr20:51,029,633...51,035,910
Ensembl chr20:51,029,609...51,035,951 		JBrowse link
G RETSAT retinol saturase ISO SMPDB SMP:00336 NCBI chr17:39,668,185...39,682,166
Ensembl chr17:39,668,256...39,680,560 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00336 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131 		JBrowse link
G SDF2L1 stromal cell derived factor 2 like 1 ISO SMPDB SMP:00336 NCBI chr26:30,918,788...30,920,873
Ensembl chr26:30,918,811...30,920,868 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4046
    disease pathway 717
      nutritional and metabolic disease pathway 575
        nutritional disorder pathway 53
          avitaminosis pathway 44
            folic acid deficiency pathway + 12
            vitamin A deficiency pathway 32
paths to the root