RDH12 (retinol dehydrogenase 12) - Rat Genome Database

Name: RDH12
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: RDH12 (retinol dehydrogenase 12) Canis lupus familiaris

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Symbol:

RDH12

Name:

retinol dehydrogenase 12

RGD ID:

12358280

Description:

ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (inferred); all-trans-retinol dehydrogenase (NADP+) activity (inferred); oxidoreductase activity (inferred); INVOLVED IN cellular detoxification of aldehyde (inferred); retinol metabolic process (inferred); visual perception (inferred); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); Eye Abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN photoreceptor inner segment (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinol dehydrogenase 12 (all-trans/9-cis/11-cis)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RDH12 (retinol dehydrogenase 12)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rdh12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rdh12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rdh12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RDH12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rdh12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RDH12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RDH12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rdh12 (retinol dehydrogenase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	41,685,045 - 41,696,120 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	41,684,996 - 41,695,447 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	41,376,188 - 41,387,256 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	41,915,013 - 41,926,089 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	41,915,087 - 41,926,101 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	41,530,993 - 41,542,054 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	41,604,398 - 41,615,461 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	41,963,799 - 41,974,867 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cone-rod dystrophy (ISO)

Eye Abnormalities (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

globe disease (ISO)

Leber congenital amaurosis (ISO)

Leber congenital amaurosis 13 (ISO)

Leber hereditary optic neuropathy (ISO)

macular degeneration (ISO)

paraplegia (ISO)

retinal degeneration (ISO)

retinitis pigmentosa (ISO)

Stargardt disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular detoxification of aldehyde (IEA)

retinol metabolic process (IEA)

visual perception (IEA)

Cellular Component

photoreceptor inner segment (IEA)

Molecular Function

all-trans-retinol dehydrogenase (NAD+) activity (IEA)

all-trans-retinol dehydrogenase (NADP+) activity (IEA)

oxidoreductase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

altered retinoid cycle metabolic pathway (ISO)

retinitis pigmentosa pathway (ISO)

retinoid cycle metabolic pathway (ISO)

retinol metabolic pathway (ISO)

vitamin A deficiency pathway (ISO)

References

Genomics

Comparative Map Data

RDH12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	41,685,045 - 41,696,120 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	41,684,996 - 41,695,447 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	41,376,188 - 41,387,256 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	41,915,013 - 41,926,089 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	41,915,087 - 41,926,101 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	41,530,993 - 41,542,054 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	41,604,398 - 41,615,461 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	41,963,799 - 41,974,867 (+)	NCBI		UU_Cfam_GSD_1.0

RDH12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	67,701,886 - 67,734,451 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	67,701,886 - 67,734,451 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	68,168,603 - 68,201,168 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	67,258,943 - 67,270,921 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	67,258,942 - 67,270,920	NCBI
Celera	14	48,227,645 - 48,260,203 (+)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	48,338,282 - 48,370,752 (+)	NCBI		HuRef
CHM1_1	14	68,107,353 - 68,139,905 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	61,909,008 - 61,941,569 (+)	NCBI		T2T-CHM13v2.0

Rdh12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	79,255,687 - 79,269,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	79,255,688 - 79,269,439 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	79,208,913 - 79,222,664 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	79,208,914 - 79,222,665 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	80,309,901 - 80,323,648 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	80,127,754 - 80,141,501 (+)	NCBI		MGSCv36	mm8
Celera	12	80,673,293 - 80,687,040 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	35.51	NCBI

Rdh12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	103,748,457 - 103,761,379 (+)	NCBI		GRCr8
mRatBN7.2	6	98,015,465 - 98,028,388 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	98,015,465 - 98,028,388 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	98,444,920 - 98,457,864 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	98,744,060 - 98,757,001 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	98,130,385 - 98,143,366 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	102,392,828 - 102,405,750 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	102,392,828 - 102,405,750 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	115,079,502 - 115,092,424 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,982,815 - 101,995,737 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	101,978,778 - 101,998,720 (+)	NCBI
Celera	6	96,400,484 - 96,413,406 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Rdh12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	2,473,096 - 2,487,623 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	2,473,145 - 2,485,779 (-)	NCBI	ChiLan1.0	ChiLan1.0

RDH12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	68,832,854 - 68,844,898 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	68,049,366 - 68,061,408 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	48,297,854 - 48,314,502 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	67,180,696 - 67,192,345 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	67,180,696 - 67,192,345 (+)	Ensembl	panpan1.1		panPan2

Rdh12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	63,069,723 - 63,080,452 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	11,111,105 - 11,121,341 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	11,111,247 - 11,121,976 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RDH12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	91,481,272 - 91,493,809 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	91,481,238 - 91,493,838 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	97,788,539 - 97,802,631 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RDH12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	44,957,854 - 44,971,855 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	44,959,921 - 44,971,836 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	33,183,713 - 33,200,221 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rdh12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	33,254,432 - 33,266,140 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	33,256,469 - 33,266,085 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RDH12
72 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	19	11	9	1	6	1	6	17	11	11	13	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005623559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038483562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038483563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038483564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038545031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038545032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038545033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038589688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038609141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038609142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038609143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026064 ⟹ ENSCAFP00000024199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	41,684,996 - 41,695,447 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845006357 ⟹ ENSCAFP00845005051

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	41,915,087 - 41,926,101 (+)	Ensembl

RefSeq Acc Id:

XM_005623559 ⟹ XP_005623616

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	41,685,045 - 41,696,120 (+)	NCBI
Dog10K_Boxer_Tasha	8	41,376,188 - 41,387,256 (+)	NCBI

Sequence:

show sequence

TGGTCTAAGCTTCCAGCCTGGCTGTCGCTGAGCTCTCACTCACTCAGCAGCAAGAGGAGCTAGA
GGAGGCAGGGGTAGCACAAAGAAGCCAGGAGTTGGAGTCAGACCAGGAGCTTGAGCCAGACTTG
GAGTTCAAGTTGCTTTTGCTAAAGCAGCAGCAACTAAAGAAGTTGAAAAGATGCTGGCTATCTT
GGGACTGCTTACCTCCTTCCTTTCTTTCCTGAAGTTCTTTGCTGGTGGGGTTTGTAGATCAAAC
GTGCAGCTTCCTGGGAAGGTAGTGGTGATCACCGGCGCCAACACGGGCATTGGCAAGGAGACAG
CCAGAGAGCTGGCTCGCAGAGGAGCCCGAGTGTACATTGCCTGCCGAGACGTACTGAAGGGGGA
GTCTGCAGCCAGTGAAATCCGAGCTGATACAAAGAACTCCCAGGTGCTGGTGCGGAAACTGGAC
CTATCTGATACCAAGTCCATCCGAGCCTTTGCTGAGGGCTTTCTGGCAGAGGAAAAGCAGCTCC
ATATTCTGATCAACAATGCGGGGGTGATGATGTGTCCATATTCTAAGACAGCTGATGGCTTTGA
AACCCACCTGGGAGTCAACCACCTAGGCCACTTTCTTCTCACTCACTTGCTCCTGGAGCGGCTG
AAGGAGTCCACCCCTGCACGGGTGGTAAACCTGTCATCGGTGGCTCACCACATTGGCAAAATTC
ATTTCCATGACCTCCAGGGTGAGAAGCGCTACAGCCGAGGTTTTGCTTATTGCCACAGCAAGCT
GGCCAATATGCTTTTTACTCGTGAGCTGGCCAAGAGGCTCCAAGGCACGGGGGTCACTACCTAT
GCTGTGCACCCAGGCGTCGTCAGCTCTGAGCTAGTGCGACACTCCTTCTTGCTGTGCCTGCTCT
GGAGGATCTTCTCCCCCTTTGTCAAGTCGGCACGGGAGGGGGCACAGACCAGCCTGCACTGTGC
CCTGGCTGAGGGTCTGGAGCCCCTGAGTGGCAAGTACTTCAGTGACTGCAAGAGGGCCTGGGTG
TCTCCGAGGGCCCGAGATAACAAAACGGCTGAGCGCTTATGGAATGTCAGCTGTGAGCTTCTAG
GAATCCAGTGGGATTAGAGCTGGTGGAAGAGCCACACCTGTATCAGGCCTAGTCCATGCCTTAC
TGAAAGGAGACCAAGAAGACGAAGGAGAAGGCCAATTCAGAAGGACTGTCCTCCTGGCTGGCTA
CTGTTGAGAATCCTGCCCTGCTCTGATTCTCTCCATTCTTCTGGAAACCTTTGCACACTCAACA
CTCTGGTGAGGCTGGTTCATGGTACAAGATGTTCACACCTACGGAGGATTCTTCTCTAAGTATT
GCAGAGTCAGCTGCCCTCTCTGGGCAGGAGGACTGGGCAGAGCCAGAATGCTCAGTGGATGTGA
CAGGAGTGTCAACATGACATACTATATGTCCAGGGTTTATAGACCCAAATTCTGGCTCATCCTC
TTTGGGATACTAGTCAGAACTCTGGAGGCTGAACCAACTCAGGAAAATCTTGGCTTGTCCTTGG
TCAACTTTGGTTTCTTTCTCTGAGCATCCTGGAGCCACTGCATGAAGCTGTACCTTCCCATTTT
CTTTTTTCAGTTCTTTTTAAGAAGTTAAAAACATTTTTTTTTAGCTTTATTGAGATTTAACTGA
CATAATATTGAGTAAATTTGGGCCTTCTCATTCTCAATCACATTGATGGTTTCTTCCTGCAAAC
TTCCCTTTACCTAAATTTTTAGAGAAAATAAAAATGGTGTATTCATCTTA

hide sequence

RefSeq Acc Id:

XM_038483562 ⟹ XP_038339490

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	41,530,993 - 41,542,054 (+)	NCBI

RefSeq Acc Id:

XM_038483563 ⟹ XP_038339491

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	41,530,993 - 41,542,054 (+)	NCBI

RefSeq Acc Id:

XM_038483564 ⟹ XP_038339492

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	41,530,993 - 41,542,054 (+)	NCBI

RefSeq Acc Id:

XM_038545031 ⟹ XP_038400959

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	41,963,799 - 41,974,867 (+)	NCBI

RefSeq Acc Id:

XM_038545032 ⟹ XP_038400960

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	41,963,799 - 41,974,867 (+)	NCBI

RefSeq Acc Id:

XM_038545033 ⟹ XP_038400961

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	41,963,799 - 41,974,867 (+)	NCBI

RefSeq Acc Id:

XM_038589688 ⟹ XP_038445616

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	8	41,376,188 - 41,387,256 (+)	NCBI

RefSeq Acc Id:

XM_038609141 ⟹ XP_038465069

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	41,604,398 - 41,615,461 (+)	NCBI

RefSeq Acc Id:

XM_038609142 ⟹ XP_038465070

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	41,604,398 - 41,615,461 (+)	NCBI

RefSeq Acc Id:

XM_038609143 ⟹ XP_038465071

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	41,604,398 - 41,615,461 (+)	NCBI

RefSeq Acc Id:

XM_038673952 ⟹ XP_038529880

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	41,915,013 - 41,926,089 (+)	NCBI

RefSeq Acc Id:

XM_038673954 ⟹ XP_038529882

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	41,915,013 - 41,926,089 (+)	NCBI

RefSeq Acc Id:

XM_038673955 ⟹ XP_038529883

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	41,915,013 - 41,926,089 (+)	NCBI

RefSeq Acc Id:

XM_547866 ⟹ XP_547866

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	41,685,045 - 41,696,120 (+)	NCBI
Dog10K_Boxer_Tasha	8	41,376,188 - 41,387,256 (+)	NCBI

Sequence:

show sequence

TGGTCTAAGCTTCCAGCCTGGCTGTCGCTGAGCTCTCACTCACTCAGCAGCAAGAGGAGCTAGA
GGAGGCAGGGGTAGCACAAAGAAGCCAGGAGTTGGAGTCAGACCAGGAGCTTGAGCCAGACTTG
GAGTTCAAGTTGCTTTTGCTAAAGCAGCAGCAACTAAAGAAGTTGAAAAGATGCTGGCTATCTT
GGGACTGCTTACCTCCTTCCTTTCTTTCCTGTACGTGATAGCTCCATCCATCAGGAAGTTCTTT
GCTGGTGGGGTTTGTAGATCAAACGTGCAGCTTCCTGGGAAGGTAGTGGTGATCACCGGCGCCA
ACACGGGCATTGGCAAGGAGACAGCCAGAGAGCTGGCTCGCAGAGGAGCCCGAGTGTACATTGC
CTGCCGAGACGTACTGAAGGGGGAGTCTGCAGCCAGTGAAATCCGAGCTGATACAAAGAACTCC
CAGGTGCTGGTGCGGAAACTGGACCTATCTGATACCAAGTCCATCCGAGCCTTTGCTGAGGGCT
TTCTGGCAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCGGGGGTGATGATGTGTCCATA
TTCTAAGACAGCTGATGGCTTTGAAACCCACCTGGGAGTCAACCACCTAGGCCACTTTCTTCTC
ACTCACTTGCTCCTGGAGCGGCTGAAGGAGTCCACCCCTGCACGGGTGGTAAACCTGTCATCGG
TGGCTCACCACATTGGCAAAATTCATTTCCATGACCTCCAGGGTGAGAAGCGCTACAGCCGAGG
TTTTGCTTATTGCCACAGCAAGCTGGCCAATATGCTTTTTACTCGTGAGCTGGCCAAGAGGCTC
CAAGGCACGGGGGTCACTACCTATGCTGTGCACCCAGGCGTCGTCAGCTCTGAGCTAGTGCGAC
ACTCCTTCTTGCTGTGCCTGCTCTGGAGGATCTTCTCCCCCTTTGTCAAGTCGGCACGGGAGGG
GGCACAGACCAGCCTGCACTGTGCCCTGGCTGAGGGTCTGGAGCCCCTGAGTGGCAAGTACTTC
AGTGACTGCAAGAGGGCCTGGGTGTCTCCGAGGGCCCGAGATAACAAAACGGCTGAGCGCTTAT
GGAATGTCAGCTGTGAGCTTCTAGGAATCCAGTGGGATTAGAGCTGGTGGAAGAGCCACACCTG
TATCAGGCCTAGTCCATGCCTTACTGAAAGGAGACCAAGAAGACGAAGGAGAAGGCCAATTCAG
AAGGACTGTCCTCCTGGCTGGCTACTGTTGAGAATCCTGCCCTGCTCTGATTCTCTCCATTCTT
CTGGAAACCTTTGCACACTCAACACTCTGGTGAGGCTGGTTCATGGTACAAGATGTTCACACCT
ACGGAGGATTCTTCTCTAAGTATTGCAGAGTCAGCTGCCCTCTCTGGGCAGGAGGACTGGGCAG
AGCCAGAATGCTCAGTGGATGTGACAGGAGTGTCAACATGACATACTATATGTCCAGGGTTTAT
AGACCCAAATTCTGGCTCATCCTCTTTGGGATACTAGTCAGAACTCTGGAGGCTGAACCAACTC
AGGAAAATCTTGGCTTGTCCTTGGTCAACTTTGGTTTCTTTCTCTGAGCATCCTGGAGCCACTG
CATGAAGCTGTACCTTCCCATTTTCTTTTTTCAGTTCTTTTTAAGAAGTTAAAAACATTTTTTT
TTAGCTTTATTGAGATTTAACTGACATAATATTGAGTAAATTTGGGCCTTCTCATTCTCAATCA
CATTGATGGTTTCTTCCTGCAAACTTCCCTTTACCTAAATTTTTAGAGAAAATAAAAATGGTGT
ATTCATCTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005623616	(Get FASTA)	NCBI Sequence Viewer
	XP_038339490	(Get FASTA)	NCBI Sequence Viewer
	XP_038339491	(Get FASTA)	NCBI Sequence Viewer
	XP_038339492	(Get FASTA)	NCBI Sequence Viewer
	XP_038400959	(Get FASTA)	NCBI Sequence Viewer
	XP_038400960	(Get FASTA)	NCBI Sequence Viewer
	XP_038400961	(Get FASTA)	NCBI Sequence Viewer
	XP_038445616	(Get FASTA)	NCBI Sequence Viewer
	XP_038465069	(Get FASTA)	NCBI Sequence Viewer
	XP_038465070	(Get FASTA)	NCBI Sequence Viewer
	XP_038465071	(Get FASTA)	NCBI Sequence Viewer
	XP_038529880	(Get FASTA)	NCBI Sequence Viewer
	XP_038529882	(Get FASTA)	NCBI Sequence Viewer
	XP_038529883	(Get FASTA)	NCBI Sequence Viewer
	XP_547866	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024199.5
	ENSCAFP00030025929.1
	ENSCAFP00040019222.1
	ENSCAFP00845005051
	ENSCAFP00845005051.1

RefSeq Acc Id:	XP_547866 ⟸ XM_547866
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SDK6 (UniProtKB/TrEMBL), A0A8I3MRK7 (UniProtKB/TrEMBL), A0A8C0QWD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLAILGLLTSFLSFLYVIAPSIRKFFAGGVCRSNVQLPGKVVVITGANTGIGKETARELARRGA RVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGV MMCPYSKTADGFETHLGVNHLGHFLLTHLLLERLKESTPARVVNLSSVAHHIGKIHFHDLQGEK RYSRGFAYCHSKLANMLFTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVK SAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGIQWD hide sequence

RefSeq Acc Id:	XP_005623616 ⟸ XM_005623559
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLAILGLLTSFLSFLKFFAGGVCRSNVQLPGKVVVITGANTGIGKETARELARRGARVYIACRD VLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKT ADGFETHLGVNHLGHFLLTHLLLERLKESTPARVVNLSSVAHHIGKIHFHDLQGEKRYSRGFAY CHSKLANMLFTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVKSAREGAQT SLHCALAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGIQWD hide sequence

Ensembl Acc Id:

ENSCAFP00000024199 ⟸ ENSCAFT00000026064

RefSeq Acc Id:	XP_038339490 ⟸ XM_038483562
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038339492 ⟸ XM_038483564
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038339491 ⟸ XM_038483563
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038465069 ⟸ XM_038609141
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038465071 ⟸ XM_038609143
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038465070 ⟸ XM_038609142
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038529880 ⟸ XM_038673952
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SDK6 (UniProtKB/TrEMBL), A0A8I3MRK7 (UniProtKB/TrEMBL), A0A8C0QWD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529883 ⟸ XM_038673955
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038529882 ⟸ XM_038673954
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038445616 ⟸ XM_038589688
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038400959 ⟸ XM_038545031
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QWD9 (UniProtKB/TrEMBL), A0A8C0SDK6 (UniProtKB/TrEMBL), A0A8I3MRK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400961 ⟸ XM_038545033
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038400960 ⟸ XM_038545032
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWD9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845005051 ⟸ ENSCAFT00845006357

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016446	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030016191	UniProtKB/TrEMBL
	ENSCAFG00040012017	UniProtKB/TrEMBL
	ENSCAFG00845003571	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026064.5	UniProtKB/TrEMBL
	ENSCAFT00030029761.1	UniProtKB/TrEMBL
	ENSCAFT00040022161.1	UniProtKB/TrEMBL
	ENSCAFT00845006357	ENTREZGENE
	ENSCAFT00845006357.1	UniProtKB/TrEMBL
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	SDR_fam	UniProtKB/TrEMBL
NCBI Gene	RDH12	ENTREZGENE
PANTHER	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	UniProtKB/TrEMBL
	RETINOL DEHYDROGENASE 12	UniProtKB/TrEMBL
Pfam	adh_short	UniProtKB/TrEMBL
PRINTS	GDHRDH	UniProtKB/TrEMBL
	SDRFAMILY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51735	UniProtKB/TrEMBL
UniProt	A0A8C0QWD9	ENTREZGENE
	A0A8C0SDK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MRK7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:52598	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-13	RDH12	retinol dehydrogenase 12		retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB