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RETINOID CYCLE METABOLIC PATHWAY (PW:0001005)

View Ontology Report

Description

The retinoid cycle metabolic pathway, also known as the visual cycle, represents the set of enzymatic reactions underlying the regeneration of vitamin A derived chromophore 11-cis retinal which assures the continued visual phototransduction response to light. The chromophore is covalently bound to the G-protein coupled (GPCR) photoreceptors; the linkage is supplied by a protonated Schiff base to a lysine residue. In the absence of light 11-cis retinal acts as an inverse agonist by constraining t

Pathway Diagram:

Ariadne Genomics Inc. 11-cis-retinal --+> visual phototransduction pathway 11-cis-retinal ---> all-trans-retinal light 11-cis-retinal NADH NAD+ 11-cis-retinol retinyl ester phosphatidylcholine all-trans-retinol all-trans-retinal NADP+ NADPH ATP ADP Rho cone opsins visual phototransduction pathway Rlbp1 11-cis-retinal ---- Rlbp1 Rbp1 Lrat Rpe65 NAD+ ---> NADH 11-cis-retinol ---> 11-cis-retinal NADPH ---> NADP+ all-trans-retinal ---> all-trans-retinol Abca4 ATP ---> ADP light --+> 11-cis-retinal all-trans-retinol ---> retinyl ester Rdh8 Rdh12 Abca4 ---> all-trans-retinal Abca4 ---- all-trans-retinal retinyl ester ---> 11-cis-retinol all-trans-retinol ---- Rbp1 11-cis-retinal ---- Rho 11-cis-retinal ---- cone opsins Rdh10 Rdh11 Rdh5 all-trans-retinol ---- Rbp3 Rbp3 phosphatidylcholine ---> retinyl ester
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Genes in Pathway:


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retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:21447403 RGD:6893650 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Opn1mw opsin 1, medium wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:21447403 RGD:6893650 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
JBrowse link
G Rdh5 retinol dehydrogenase 5 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 7:1,341,172...1,346,863
Ensembl chr 7:1,340,934...1,351,558
JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
JBrowse link
G Rho rhodopsin ISO RGD PMID:21704730 RGD:6893536 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO RGD PMID:20188572 RGD:6903223 NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO
IMP
RGD PMID:21447403 PMID:21785167 RGD:6893650, RGD:6893661 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
altered retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:20212494 RGD:8547536 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:20212494 RGD:8547536 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link

Pathway Gene Annotations

Disease Annotations Associated with Genes in the retinoid cycle metabolic pathway
Disease TermsGene Symbols
achromatopsiaOpn1mw
adrenocorticotropic hormone deficiencyRpe65
adrenoleukodystrophyOpn1mw
age related macular degenerationAbca4
age related macular degeneration 14Abca4
age related macular degeneration 2Abca4
alkaptonuriaRho
Alpers-Huttenlocher syndromeRlbp1
Animal Mammary NeoplasmsRbp1
atrial fibrillationOpn1sw
autistic disorderOpn1mw , Rdh8 , Rpe65
autoimmune diseaseRbp3
autosomal dominant limb-girdle muscular dystrophy type 2Opn1sw
Barth syndromeOpn1mw
basal cell carcinomaRbp1 , Rpe65
Bietti crystalline corneoretinal dystrophyAbca4
blindnessAbca4 , Rpe65
Bloom syndromeRlbp1
blue color blindnessOpn1sw
blue cone monochromacyOpn1mw
Bothnia retinal dystrophyRlbp1
breast ductal carcinomaLrat
carcinomaRbp1
celiac diseaseLrat
cerebral creatine deficiency syndrome 1Opn1mw
Chemical and Drug Induced Liver InjuryLrat , Rbp1
Chromosome Xq28 Duplication SyndromeOpn1mw
cleft lipAbca4
Coats diseaseRho
colorectal cancerRlbp1
Colorectal NeoplasmsAbca4
Concentric Annular Macular DystrophyAbca4
cone dystrophyAbca4
cone-rod dystrophyAbca4 , Lrat , Rbp3 , Rdh12 , Rho , Rpe65
cone-rod dystrophy 14Rho
cone-rod dystrophy 15Rpe65
cone-rod dystrophy 3Abca4
Congenital AbnormalitiesRdh5
Congenital Hypomyelinating Neuropathy 2Rho
congenital nystagmusRpe65
congenital stationary night blindnessAbca4 , Rdh5 , Rho , Rlbp1
congenital stationary night blindness autosomal dominant 1Rho
cranioectodermal dysplasia 1Rho
Craniofacial AbnormalitiesRdh10
D-2-hydroxyglutaric aciduria 2Rlbp1
Developmental DisabilitiesRpe65
dyskeratosis congenitaOpn1mw
Emery-Dreifuss muscular dystrophyOpn1mw
Experimental Autoimmune UveitisRpe65
Experimental Diabetes MellitusRpe65
Experimental Liver CirrhosisLrat , Rdh10
Experimental Mammary NeoplasmsRbp1
exudative vitreoretinopathyAbca4
Eye AbnormalitiesAbca4 , Lrat , Rdh12 , Rlbp1 , Rpe65
favismOpn1mw
Fetal DeathRdh10
Fetal Growth RetardationRbp1
frontometaphyseal dysplasiaOpn1mw
fundus albipunctatusRdh5 , Rho , Rlbp1
fundus dystrophyAbca4 , Lrat , Rbp3 , Rdh12 , Rdh5 , Rho , Rlbp1 , Rpe65
genetic diseaseAbca4 , Lrat , Rbp3 , Rdh12 , Rdh5 , Rho , Rlbp1 , Rpe65
globe diseaseAbca4 , Rdh12 , Rpe65
hepatocellular carcinomaLrat
Hereditary Eye DiseasesLrat , Rlbp1 , Rpe65
immunodeficiency 21Rho
immunodeficiency 33Opn1mw
intellectual disabilityRpe65
invasive ductal carcinomaLrat
Joubert syndrome 9Rpe65
Juberg Hayward SyndromeOpn1mw
Leber congenital amaurosisAbca4 , Lrat , Rbp1 , Rdh12 , Rpe65
Leber congenital amaurosis 1Lrat
Leber congenital amaurosis 13Rdh11 , Rdh12
Leber congenital amaurosis 14Abca4 , Lrat
Leber congenital amaurosis 2Rpe65
Leber hereditary optic neuropathyLrat , Rdh12 , Rpe65
macular degenerationAbca4 , Rdh12 , Rlbp1
Mandibulofacial Dysostosis with Mental DeficiencyAbca4
Melnick-Needles syndromeOpn1mw
methylmalonic acidemia and homocysteinemia cblX typeOpn1mw
multiple myelomaRbp1
myopiaRdh5
Neurodevelopmental DisordersRpe65
neuropathyAbca4
Newfoundland cone-rod dystrophyRlbp1
night blindnessRdh5 , Rho , Rlbp1
occult macular dystrophyRho
otopalatodigital syndrome type 2Opn1mw
paraplegiaOpn1mw , Rdh11 , Rdh12
pathologic nystagmusRpe65
peripheral nervous system diseaseAbca4
periventricular nodular heterotopiaOpn1mw
Periventricular Nodular Heterotopia 4Opn1mw
pleomorphic xanthoastrocytomaOpn1sw
primary autosomal recessive microcephaly 17Rho
Primary Lymphedema with MyelodysplasiaRho
red-green color blindnessOpn1mw
retinal degenerationAbca4 , Rdh12 , Rho , Rpe65
Retinal Dystrophy, Early Onset SevereAbca4
Retinal Dystrophy, Juvenile Cataracts, and Short Stature SyndromeRdh11
retinitis pigmentosaAbca4 , Lrat , Rbp3 , Rdh12 , Rdh5 , Rho , Rlbp1 , Rpe65
retinitis pigmentosa 1Abca4
retinitis pigmentosa 19Abca4
retinitis pigmentosa 20Rpe65
retinitis pigmentosa 4Rho
retinitis pigmentosa 66Rbp3
retinitis pigmentosa 87Rpe65
schizophreniaRbp3
scotomaAbca4
severe congenital encephalopathy due to MECP2 mutationOpn1mw
SplenomegalyOpn1mw
squamous cell carcinomaRpe65
Stargardt diseaseAbca4 , Rdh12 , Rho
Stargardt Disease 1Abca4 , Rho
Stargardt Disease 3Abca4
Stomach NeoplasmsRbp1
syndromic X-linked intellectual disability Lubs typeOpn1mw
uveitisRbp3
Vision DisordersAbca4
Vitamin A DeficiencyLrat
Pathway Annotations Associated with Genes in the retinoid cycle metabolic pathway

References Associated with the retinoid cycle metabolic pathway:

Ontology Path Diagram:

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Import into Pathway Studio: