RDH16 (retinol dehydrogenase 16) - Rat Genome Database

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Gene: RDH16 (retinol dehydrogenase 16) Canis lupus familiaris
Analyze
Symbol: RDH16
Name: retinol dehydrogenase 16
RGD ID: 12052613
Description: ENCODES a protein that exhibits NAD-retinol dehydrogenase activity (ortholog); INVOLVED IN positive regulation of retinoic acid biosynthetic process (ortholog); retinoic acid metabolic process (ortholog); retinol metabolic process (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); organelle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinol dehydrogenase 16 (all-trans)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,124,322 - 1,134,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,124,320 - 1,130,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,188,751 - 1,198,258 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,135,298 - 1,144,806 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,135,296 - 1,145,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,112,204 - 1,121,711 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,354,063 - 1,363,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,478,831 - 1,488,339 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RDH16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,124,322 - 1,134,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,124,320 - 1,130,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,188,751 - 1,198,258 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,135,298 - 1,144,806 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,135,296 - 1,145,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,112,204 - 1,121,711 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,354,063 - 1,363,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,478,831 - 1,488,339 (-)NCBIUU_Cfam_GSD_1.0
RDH16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,951,431 - 56,957,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,951,431 - 56,959,374 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,345,215 - 57,351,392 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,631,482 - 55,637,685 (-)NCBINCBI36Build 36hg18NCBI36
Celera1256,999,103 - 57,005,306 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,383,970 - 54,390,173 (-)NCBIHuRef
CHM1_11257,312,965 - 57,319,168 (-)NCBICHM1_1
T2T-CHM13v2.01256,919,300 - 56,925,477 (-)NCBIT2T-CHM13v2.0
Rdh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,595,595 - 127,604,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,595,590 - 127,604,166 (+)EnsemblGRCm39 Ensembl
GRCm3810127,759,726 - 127,768,299 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,759,721 - 127,768,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,196,819 - 127,205,355 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,162,759 - 127,171,245 (+)NCBIMGSCv36mm8
Celera10130,154,374 - 130,162,902 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1075.21NCBI
Rdh16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,499,763 - 65,510,304 (+)NCBIGRCr8
mRatBN7.2763,616,711 - 63,625,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,597,536 - 63,624,124 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,505,927 - 65,514,269 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,708,217 - 67,716,557 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,509,523 - 67,517,833 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,058,150 - 71,072,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,980,422 - 71,072,689 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,151,962 - 71,152,405 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,752,257 - 67,766,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,772,988 - 67,787,725 (+)NCBI
Celera754,092,966 - 54,096,444 (-)NCBICelera
Cytogenetic Map7q22NCBI
RDH16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,345,736 - 37,380,367 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,369,988 - 37,377,137 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,958,385 - 31,966,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,211,691 - 32,219,624 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,212,746 - 32,219,624 (+)Ensemblpanpan1.1panPan2
LOC101965278
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,669,159 - 57,676,568 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,194,547 - 1,200,897 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,195,200 - 1,200,778 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100512656
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,228,057 - 22,292,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,277,006 - 22,285,534 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,085,801 - 24,094,292 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RDH16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,826,447 - 52,854,731 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,848,488 - 52,854,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,118,277 - 193,127,224 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in RDH16
142 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 7 6 6 6 6 5 1
Low 3 15 7 8 5 5
Below cutoff 5 6 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005625527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005625528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005625529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005625530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002630388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005331577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005365287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005399724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005433067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000000245   ⟹   ENSCAFP00000000221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl101,124,320 - 1,130,453 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845016450   ⟹   ENSCAFP00845012795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,135,296 - 1,145,453 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845016487   ⟹   ENSCAFP00845012821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,135,296 - 1,142,889 (-)Ensembl
RefSeq Acc Id: XM_005625527   ⟹   XP_005625584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,131,914 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,196,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005625528   ⟹   XP_005625585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,131,913 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,196,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005625529   ⟹   XP_005625586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,131,920 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,196,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005625530   ⟹   XP_005625587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,131,913 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,196,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014117166   ⟹   XP_013972641
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,134,106 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,198,247 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014117167   ⟹   XP_013972642
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,131,913 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,196,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022424079   ⟹   XP_022279787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,132,758 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,197,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038487842   ⟹   XP_038343770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,121,700 (-)NCBI
RefSeq Acc Id: XM_038487843   ⟹   XP_038343771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,119,793 (-)NCBI
RefSeq Acc Id: XM_038487844   ⟹   XP_038343772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,119,793 (-)NCBI
RefSeq Acc Id: XM_038487845   ⟹   XP_038343773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,119,795 (-)NCBI
RefSeq Acc Id: XM_038487846   ⟹   XP_038343774
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,120,541 (-)NCBI
RefSeq Acc Id: XM_038487847   ⟹   XP_038343775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,119,793 (-)NCBI
RefSeq Acc Id: XM_038487848   ⟹   XP_038343776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,119,810 (-)NCBI
RefSeq Acc Id: XM_038549734   ⟹   XP_038405662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,488,328 (-)NCBI
RefSeq Acc Id: XM_038549735   ⟹   XP_038405663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,486,420 (-)NCBI
RefSeq Acc Id: XM_038549736   ⟹   XP_038405664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,486,420 (-)NCBI
RefSeq Acc Id: XM_038549737   ⟹   XP_038405665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,486,423 (-)NCBI
RefSeq Acc Id: XM_038549738   ⟹   XP_038405666
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,487,169 (-)NCBI
RefSeq Acc Id: XM_038549739   ⟹   XP_038405667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,486,420 (-)NCBI
RefSeq Acc Id: XM_038549740   ⟹   XP_038405668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,486,438 (-)NCBI
RefSeq Acc Id: XM_038613696   ⟹   XP_038469624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,363,560 (-)NCBI
RefSeq Acc Id: XM_038613697   ⟹   XP_038469625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,361,652 (-)NCBI
RefSeq Acc Id: XM_038613698   ⟹   XP_038469626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,361,652 (-)NCBI
RefSeq Acc Id: XM_038613699   ⟹   XP_038469627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,361,655 (-)NCBI
RefSeq Acc Id: XM_038613700   ⟹   XP_038469628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,362,401 (-)NCBI
RefSeq Acc Id: XM_038613701   ⟹   XP_038469629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,361,652 (-)NCBI
RefSeq Acc Id: XM_038613702   ⟹   XP_038469630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,361,670 (-)NCBI
RefSeq Acc Id: XM_038679056   ⟹   XP_038534984
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,144,795 (-)NCBI
RefSeq Acc Id: XM_038679058   ⟹   XP_038534986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,142,887 (-)NCBI
RefSeq Acc Id: XM_038679059   ⟹   XP_038534987
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,142,887 (-)NCBI
RefSeq Acc Id: XM_038679060   ⟹   XP_038534988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,142,890 (-)NCBI
RefSeq Acc Id: XM_038679061   ⟹   XP_038534989
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,143,636 (-)NCBI
RefSeq Acc Id: XM_038679062   ⟹   XP_038534990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,142,887 (-)NCBI
RefSeq Acc Id: XM_038679063   ⟹   XP_038534991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,142,905 (-)NCBI
RefSeq Acc Id: XR_002630388
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,124,322 - 1,134,138 (-)NCBI
Dog10K_Boxer_Tasha101,188,751 - 1,198,258 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005331577
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,112,204 - 1,121,711 (-)NCBI
RefSeq Acc Id: XR_005365287
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,478,831 - 1,488,339 (-)NCBI
RefSeq Acc Id: XR_005399724
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,354,063 - 1,363,571 (-)NCBI
RefSeq Acc Id: XR_005433067
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,135,298 - 1,144,806 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005625584 (Get FASTA)   NCBI Sequence Viewer  
  XP_005625585 (Get FASTA)   NCBI Sequence Viewer  
  XP_005625586 (Get FASTA)   NCBI Sequence Viewer  
  XP_005625587 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972641 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972642 (Get FASTA)   NCBI Sequence Viewer  
  XP_022279787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343770 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343771 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405662 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405663 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405664 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534984 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534988 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534989 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534991 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000000221.4
  ENSCAFP00000068545.1
  ENSCAFP00030018964.1
  ENSCAFP00040015552.1
  ENSCAFP00040015673.1
  ENSCAFP00845012795
  ENSCAFP00845012795.1
  ENSCAFP00845012821
  ENSCAFP00845012821.1
RefSeq Acc Id: XP_013972641   ⟸   XM_014117166
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S412 (UniProtKB/TrEMBL),   A0A8I3N0Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005625586   ⟸   XM_005625529
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005625587   ⟸   XM_005625530
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005625584   ⟸   XM_005625527
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005625585   ⟸   XM_005625528
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013972642   ⟸   XM_014117167
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022279787   ⟸   XM_022424079
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000000221   ⟸   ENSCAFT00000000245
RefSeq Acc Id: XP_038343770   ⟸   XM_038487842
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038343774   ⟸   XM_038487846
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343776   ⟸   XM_038487848
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343773   ⟸   XM_038487845
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343775   ⟸   XM_038487847
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343772   ⟸   XM_038487844
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343771   ⟸   XM_038487843
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469624   ⟸   XM_038613696
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038469628   ⟸   XM_038613700
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469630   ⟸   XM_038613702
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469627   ⟸   XM_038613699
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469629   ⟸   XM_038613701
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469626   ⟸   XM_038613698
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469625   ⟸   XM_038613697
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038534984   ⟸   XM_038679056
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S412 (UniProtKB/TrEMBL),   A0A8I3N0Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534989   ⟸   XM_038679061
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534991   ⟸   XM_038679063
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534988   ⟸   XM_038679060
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534990   ⟸   XM_038679062
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534987   ⟸   XM_038679059
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038534986   ⟸   XM_038679058
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405662   ⟸   XM_038549734
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S412 (UniProtKB/TrEMBL),   A0A8I3N0Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405666   ⟸   XM_038549738
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405668   ⟸   XM_038549740
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405665   ⟸   XM_038549737
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405667   ⟸   XM_038549739
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405664   ⟸   XM_038549736
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405663   ⟸   XM_038549735
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N469 (UniProtKB/TrEMBL),   A0A8C0R6Z6 (UniProtKB/TrEMBL),   A0A8I3N8I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845012795   ⟸   ENSCAFT00845016450
RefSeq Acc Id: ENSCAFP00845012821   ⟸   ENSCAFT00845016487


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000148 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011759 UniProtKB/TrEMBL
  ENSCAFG00040009656 UniProtKB/TrEMBL
  ENSCAFG00845009333 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000245.5 UniProtKB/TrEMBL
  ENSCAFT00000095345.1 UniProtKB/TrEMBL
  ENSCAFT00030021748.1 UniProtKB/TrEMBL
  ENSCAFT00040017910.1 UniProtKB/TrEMBL
  ENSCAFT00040018053.1 UniProtKB/TrEMBL
  ENSCAFT00845016450 ENTREZGENE
  ENSCAFT00845016450.1 UniProtKB/TrEMBL
  ENSCAFT00845016487 ENTREZGENE
  ENSCAFT00845016487.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report cfa:474409 UniProtKB/TrEMBL
NCBI Gene RDH16 ENTREZGENE
PANTHER RETINOL DEHYDROGENASE 16 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8C0N469 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R6Z6 ENTREZGENE
  A0A8C0S412 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N8I3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:52599 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-13 RDH16  retinol dehydrogenase 16    retinol dehydrogenase 16 (all-trans)  Symbol and/or name change 5135510 APPROVED