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ONTOLOGY REPORT - ANNOTATIONS

Term:maturation of LSU-rRNA
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Accession:GO:0000470 term browser browse the term
Definition:Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule.


show annotations for term's descendants           Sort by:
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:259,826,698...259,827,548 JBrowse link
G AABR07027819.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:43,254,214...43,255,377 JBrowse link
G AABR07029262.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:18,291,363...18,292,163 JBrowse link
G AABR07030630.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:93,364,092...93,364,568 JBrowse link
G AABR07049918.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 5:139,195,914...139,196,714 JBrowse link
G AC128901.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:148,270,351...148,271,151 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G ENSRNOG00000067069 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:71,346,292...71,347,142 JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687 		JBrowse link
G LOC134483817 large ribosomal subunit protein eL8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC134486107 large ribosomal subunit protein eL8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Mak16 MAK16 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388 		JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rpf2l1 ribosome production factor 2 homolog like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:134,287,529...134,288,901
Ensembl chr 6:134,287,818...134,288,702 		JBrowse link
G Rpl7a ribosomal protein L7A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716 		JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645 		JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008724.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:70,904,506...70,905,278 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
IBA
IEA
ISS		 (PMID:17353269)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:17353269 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G ENSRNOG00000064315 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:33,274,509...33,275,597 JBrowse link
G ENSRNOG00000067266 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:165,188,105...165,188,942 JBrowse link
G ENSRNOG00000070052 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:73,132,657...73,133,891 JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009 		JBrowse link
G LOC103694242 60S ribosomal protein L7 pseudogene involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:32,995,281...32,996,164
Ensembl chr16:32,995,363...32,996,204
Ensembl chr16:32,995,363...32,996,204 		JBrowse link
G LOC120093238 60S ribosomal protein L35-like involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:40,423,594...40,425,165
Ensembl chr 6:40,423,832...40,424,203 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:25190460)
GO_REF:0000033
GO_REF:0000104
(PMID:16738141), (PMID:17353269)		 UniProt
RGD
GO_Central		 PMID:16738141 PMID:17353269 PMID:25190460 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,746,996...69,782,656
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Rbm34 RNA binding motif protein 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:54,936,516...54,956,810
Ensembl chr19:54,936,531...54,956,715 		JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpl35 ribosomal protein L35 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl35-ps8 ribosomal protein L35, pseudogene 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:18,099,852...18,100,291
Ensembl chr  X:18,099,866...18,100,291 		JBrowse link
G Rpl35l1 ribosomal protein L35 like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr18:23,159,401...23,159,843
Ensembl chr18:23,159,441...23,159,812 		JBrowse link
G Rpl35l2 ribosomal protein L35 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:30,634,173...30,634,690
Ensembl chr 8:30,634,325...30,634,690 		JBrowse link
G Rpl7 ribosomal protein L7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpl7-ps15 ribosomal protein L7, pseudogene 15 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:165,188,160...165,189,004 JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110 		JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363 		JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000104
(PMID:16043514), (PMID:17353269)		 UniProt
GO_Central
RGD		 PMID:16043514 PMID:17353269 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 9:61,475,498...61,502,762
Ensembl chr 9:61,475,517...61,502,469 		JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
Ensembl chr10:69,748,789...69,790,475 		JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      primary metabolic process 10016
        RNA processing 954
          rRNA processing 234
            maturation of LSU-rRNA 45
              maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
              maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
              maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 27
              maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
Path 2
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      organic substance metabolic process 10971
        organic cyclic compound metabolic process 6031
          nucleobase-containing compound metabolic process 5524
            nucleic acid metabolic process 4949
              nucleic acid biosynthetic process 4203
                RNA biosynthetic process 4090
                  RNA processing 954
                    rRNA processing 234
                      maturation of LSU-rRNA 45
                        maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
                        maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
                        maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 27
                        maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
paths to the root