LOC103694242 (60S ribosomal protein L7 pseudogene) - Rat Genome Database

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Gene: LOC103694242 (60S ribosomal protein L7 pseudogene) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103694242
Name: 60S ribosomal protein L7 pseudogene
RGD ID: 9114442
Description: Orthologous to human RPL7 (ribosomal protein L7).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AC121415.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81638,005,962 - 38,006,873 (-)NCBIGRCr8
mRatBN7.21632,995,281 - 32,996,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01636,450,160 - 36,451,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2178,212,156 - 178,212,785 (-)NCBIRnor6.0rn6Rnor6.0
Celera1632,933,347 - 32,934,227 (-)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC103694242
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000009702   ⟹   ENSRNOP00000058859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000058859.2
RefSeq Acc Id: ENSRNOP00000058859   ⟸   ENSRNOT00000009702
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUE9-F1-model_v2 AlphaFold F1LUE9 1-210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9114442 AgrOrtholog
BioCyc Gene G2FUF-11525 BioCyc
Ensembl Genes ENSRNOG00000007402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009702.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1390.20 UniProtKB/TrEMBL
InterPro L30_ferredoxin-like_sf UniProtKB/TrEMBL
  Ribosomal_L30_CS UniProtKB/TrEMBL
  Ribosomal_L30_ferredoxin-like UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/TrEMBL
  Ribosomal_L7/L30 UniProtKB/TrEMBL
  Ribosomal_L7_euk UniProtKB/TrEMBL
  Ribosomal_L7_euk_arc UniProtKB/TrEMBL
NCBI Gene LOC103694242 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L7 UniProtKB/TrEMBL
  PTHR11524 UniProtKB/TrEMBL
Pfam Ribosomal_L30 UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/TrEMBL
PhenoGen LOC103694242 PhenoGen
PROSITE RIBOSOMAL_L30 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007402 RatGTEx
Superfamily-SCOP SSF55129 UniProtKB/TrEMBL
UniProt F1LUE9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC103694242  60S ribosomal protein L7 pseudogene  AC121415.1    Data merged from RGD:15003326 737654 PROVISIONAL
2019-11-08 AC121415.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2014-08-25 LOC103694242  60S ribosomal protein L7 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL