AABR07008724.1 (null) - Rat Genome Database

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Gene: AABR07008724.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07008724.1
Name:
RGD ID: 15003477
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl270,904,506 - 70,905,278 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl271,753,816 - 71,754,546 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:61
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000025809
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium
Low 11
Below cutoff 10 1

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000025809   ⟹   ENSRNOP00000070529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl270,904,506 - 70,905,278 (+)Ensembl
Rnor_6.0 Ensembl271,753,816 - 71,754,546 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000070529.2
RefSeq Acc Id: ENSRNOP00000070529   ⟸   ENSRNOT00000025809

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JY60-F1-model_v2 AlphaFold A0A0G2JY60 1-74 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000019037 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025809.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.310 UniProtKB/TrEMBL
InterPro Ribosomal_L29/L35 UniProtKB/TrEMBL
  Ribosomal_L29/L35_sf UniProtKB/TrEMBL
  RL35 UniProtKB/TrEMBL
PANTHER 60S RIBOSOMAL PROTEIN L35 UniProtKB/TrEMBL
  PTHR45722 UniProtKB/TrEMBL
Pfam Ribosomal_L29 UniProtKB/TrEMBL
PhenoGen AABR07008724.1 PhenoGen
RatGTEx ENSRNOG00000019037 RatGTEx
Superfamily-SCOP SSF46561 UniProtKB/TrEMBL
UniProt A0A0G2JY60_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07008724.1        Symbol and Name status set to provisional 45752 PROVISIONAL