Rpl7 (ribosomal protein L7) - Rat Genome Database

Name: Rpl7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rpl7 (ribosomal protein L7) Rattus norvegicus

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Symbol:

Rpl7

Name:

ribosomal protein L7

Description:

ENCODES a protein that exhibits 5S rRNA binding; DNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN liver regeneration; ribosomal large subunit biogenesis (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN A band; cytosolic large ribosomal subunit; ribosome; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether

AGR Description:

Exhibits 5S rRNA binding activity; involved in liver regeneration; localizes to the A band and cytosolic large ribosomal subunit; orthologous to human RPL7 (ribosomal protein L7).

Merged Description:

Exhibits 5S rRNA binding activity; involved in liver regeneration; localizes to the A band and cytosolic large ribosomal subunit; orthologous to human RPL7 (ribosomal protein L7); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

60S ribosomal protein L7

Orthologs:

Homo sapiens (human) : RPL7 (ribosomal protein L7) HGNC Alliance
Mus musculus (house mouse) : Rpl7 (ribosomal protein L7) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rpl7 (ribosomal protein L7)
Pan paniscus (bonobo/pygmy chimpanzee) : RPL7 (ribosomal protein L7)
Canis lupus familiaris (dog) : RPL7 (ribosomal protein L7)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rpl7 (ribosomal protein L7)
Sus scrofa (pig) : RPL7 (ribosomal protein L7)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL7 (ribosomal protein L7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rpl7 (ribosomal protein L7)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rpl7 (ribosomal protein L7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL7 (ribosomal protein L7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL7 (ribosomal protein L7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl7 (ribosomal protein L7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL7 (ribosomal protein L7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rpl7 (ribosomal protein L7)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Homo sapiens (human):	RPL7 (ribosomal protein L7)	Alliance	DIOPT (HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Mus musculus (house mouse):	Gm5045 (predicted gene 5045)	Alliance	DIOPT (Hieranoid, OrthoInspector, PhylomeDB)
Danio rerio (zebrafish):	rpl7 (ribosomal protein L7)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Caenorhabditis elegans (roundworm):	rpl-7	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	RPL7A	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Saccharomyces cerevisiae (baker's yeast):	RPL7B	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Drosophila melanogaster (fruit fly):	RpL7	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)

Related Pseudogenes:

LOC366268

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	5	2,633,517 - 2,636,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	2,621,855 - 2,624,863 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	2,315,766 - 2,318,774 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	2,315,744 - 2,318,414 (+)	NCBI
Celera	5	2,818,341 - 2,821,349 (+)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

Molecular Pathway Annotations

References - curated

References - uncurated

RGD Disease Portals

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Damaging Variants

Additional Information

External Database Links

Nomenclature History

More on Rpl7
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	735169
Created:	2004-02-05
Species:	Rattus norvegicus
Last Modified:	2019-04-12
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable
Gene Enrichment

RGD Manual Annotations