Rpl7 (ribosomal protein L7) - Rat Genome Database

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Gene: Rpl7 (ribosomal protein L7) Rattus norvegicus
Analyze
Symbol: Rpl7
Name: ribosomal protein L7
RGD ID: 735169
Description: Enables 5S rRNA binding activity. Involved in liver regeneration. Located in A band and ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC366268   LOC367195  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.253,217,184 - 3,220,192 (+)NCBImRatBN7.2
Rnor_6.052,633,517 - 2,636,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,632,712 - 2,640,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.052,621,855 - 2,624,863 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,315,766 - 2,318,774 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.152,315,744 - 2,318,414 (+)NCBI
Celera52,818,341 - 2,821,349 (+)NCBICelera
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3'-diindolylmethane  (ISO)
aconitine  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
artesunate  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
okadaic acid  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
propiconazole  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
thimerosal  (ISO)
Tributyltin oxide  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:2648130   PMID:7654221   PMID:8441630   PMID:12477932   PMID:12962325   PMID:16452087   PMID:16791210   PMID:18697920   PMID:18809582   PMID:19946888   PMID:21170055   PMID:21423176  
PMID:21630459   PMID:21700703   PMID:22022532   PMID:22658674   PMID:22681889   PMID:23376485   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rpl7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.253,217,184 - 3,220,192 (+)NCBImRatBN7.2
Rnor_6.052,633,517 - 2,636,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,632,712 - 2,640,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.052,621,855 - 2,624,863 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,315,766 - 2,318,774 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.152,315,744 - 2,318,414 (+)NCBI
Celera52,818,341 - 2,821,349 (+)NCBICelera
Cytogenetic Map5q11NCBI
RPL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,290,242 - 73,294,466 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl873,290,242 - 73,295,789 (-)EnsemblGRCh38hg38GRCh38
GRCh37874,202,477 - 74,206,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,365,428 - 74,368,423 (-)NCBINCBI36hg18NCBI36
Build 34874,365,429 - 74,368,422NCBI
Celera870,200,410 - 70,203,406 (-)NCBI
Cytogenetic Map8q21.11NCBI
HuRef869,693,718 - 69,696,713 (-)NCBIHuRef
CHM1_1874,255,572 - 74,258,567 (-)NCBICHM1_1
Rpl7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,171,519 - 16,174,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl116,171,519 - 16,174,886 (-)Ensembl
GRCm38116,101,295 - 16,104,433 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,101,295 - 16,104,662 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,091,376 - 16,094,514 (-)NCBIGRCm37mm9NCBIm37
MGSCv36116,086,512 - 16,089,621 (-)NCBImm8
Celera116,037,288 - 16,040,427 (-)NCBICelera
Cytogenetic Map1A3NCBI
Rpl7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554446,910,818 - 6,914,047 (+)NCBIChiLan1.0ChiLan1.0
RPL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1871,476,492 - 71,480,285 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl871,476,492 - 71,480,279 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0869,829,356 - 69,833,184 (-)NCBIMhudiblu_PPA_v0panPan3
RPL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,881,048 - 21,884,401 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,881,044 - 21,884,731 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,145,346 - 22,148,699 (-)NCBI
ROS_Cfam_1.02921,990,809 - 21,994,219 (-)NCBI
ROS_Cfam_1.0 Ensembl2921,990,492 - 21,994,871 (-)Ensembl
UMICH_Zoey_3.12922,048,894 - 22,052,259 (-)NCBI
UNSW_CanFamBas_1.02922,085,699 - 22,089,052 (-)NCBI
UU_Cfam_GSD_1.02922,366,605 - 22,369,956 (-)NCBI
Rpl7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,390,000 - 57,393,185 (+)NCBI
SpeTri2.0NW_0049366482,055,396 - 2,058,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,602,431 - 62,605,892 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,602,430 - 62,605,892 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap4q11-q14NCBI
RPL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,899,626 - 68,902,757 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603972,469,006 - 72,472,687 (+)NCBIVero_WHO_p1.0
Rpl7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474417,869,862 - 17,873,175 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:71
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000009431
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC159423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC159431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M17422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009431   ⟹   ENSRNOP00000009431
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl52,632,712 - 2,640,021 (+)Ensembl
RefSeq Acc Id: NM_001100534   ⟹   NP_001094004
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.253,217,184 - 3,220,192 (+)NCBI
Rnor_6.052,633,517 - 2,636,525 (+)NCBI
Rnor_5.052,621,855 - 2,624,863 (+)NCBI
RGSC_v3.452,315,766 - 2,318,774 (+)RGD
Celera52,818,341 - 2,821,349 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001094004 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42075 (Get FASTA)   NCBI Sequence Viewer  
  AAI59424 (Get FASTA)   NCBI Sequence Viewer  
  AAI59432 (Get FASTA)   NCBI Sequence Viewer  
  EDM11514 (Get FASTA)   NCBI Sequence Viewer  
  P05426 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001094004   ⟸   NM_001100534
- UniProtKB: B0K031 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009431   ⟸   ENSRNOT00000009431
Protein Domains
Ribosomal_L30   Ribosomal_L30_N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P05426-F1-model_v2 AlphaFold P05426 1-260 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693526
Promoter ID:EPDNEW_R4049
Type:multiple initiation site
Name:Rpl7_1
Description:ribosomal protein L7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.052,633,496 - 2,633,556EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 2636115 2636116 A G snv CDS
5 2636139 2636140 G A snv WKY/N (MCW), MR/N (MCW)
5 2636141 2636142 C A snv COP/CrCrl (MCW & UW), CDR


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 2624453 2624454 A G snv SR/JrHsd (MCW), SBH/Ygl (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 2318388 2318389 G A snv WKY/N (KNAW), MR/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735169 AgrOrtholog
BioCyc Gene G2FUF-42303 BioCyc
Ensembl Genes ENSRNOG00000006992 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009431 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009431 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1390.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9023627 IMAGE-MGC_LOAD
  IMAGE:9091211 IMAGE-MGC_LOAD
InterPro L30_ferredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30_ferredoxin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7/L30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7_euk_arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297755 UniProtKB/TrEMBL
MGC_CLONE MGC:188724 IMAGE-MGC_LOAD
  MGC:188753 IMAGE-MGC_LOAD
NCBI Gene 297755 ENTREZGENE
PANTHER PTHR11524 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl7 PhenoGen
PROSITE RIBOSOMAL_L30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs uL30_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B0K023_RAT UniProtKB/TrEMBL
  B0K031 ENTREZGENE, UniProtKB/TrEMBL
  P05426 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl7  ribosomal protein L7      Symbol and Name status set to approved 1299863 APPROVED