Rbm34 (RNA binding motif protein 34) - Rat Genome Database

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Gene: Rbm34 (RNA binding motif protein 34) Rattus norvegicus
Analyze
Symbol: Rbm34
Name: RNA binding motif protein 34
RGD ID: 1310161
Description: Predicted to enable RNA binding activity. Predicted to be located in chromosome; nucleolus; and nucleoplasm. Orthologous to human RBM34 (RNA binding motif protein 34); INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC307956; RGD1310161; RNA-binding motif protein 34; RNA-binding protein 34; similar to DNA segment, Chr 8, ERATO Doi 233, expressed
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21954,936,516 - 54,956,810 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)Ensembl
Rnor_6.01959,874,745 - 59,894,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1959,874,752 - 59,894,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01970,541,736 - 70,562,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41956,864,501 - 56,885,217 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11956,869,567 - 56,890,277 (-)NCBI
Celera1954,275,935 - 54,296,237 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (ISO)

Molecular Function
RNA binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbm34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21954,936,516 - 54,956,810 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)Ensembl
Rnor_6.01959,874,745 - 59,894,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1959,874,752 - 59,894,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01970,541,736 - 70,562,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41956,864,501 - 56,885,217 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11956,869,567 - 56,890,277 (-)NCBI
Celera1954,275,935 - 54,296,237 (-)NCBICelera
Cytogenetic Map19q12NCBI
RBM34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,131,183 - 235,161,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1235,131,183 - 235,161,283 (-)EnsemblGRCh38hg38GRCh38
GRCh371235,294,498 - 235,324,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,361,572 - 233,391,194 (-)NCBINCBI36hg18NCBI36
Celera1208,537,121 - 208,567,232 (-)NCBI
Cytogenetic Map1q42.3NCBI
HuRef1205,743,078 - 205,773,006 (-)NCBIHuRef
CHM1_11236,566,820 - 236,596,900 (-)NCBICHM1_1
T2T-CHM13v2.01234,522,898 - 234,552,956 (-)NCBI
Rbm34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398127,673,922 - 127,697,799 (-)NCBIGRCm39mm39
GRCm39 Ensembl8127,673,922 - 127,697,821 (-)Ensembl
GRCm388126,947,172 - 126,971,127 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8126,947,172 - 126,971,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv378129,471,072 - 129,494,979 (-)NCBIGRCm37mm9NCBIm37
MGSCv368129,833,262 - 129,857,169 (-)NCBImm8
Celera8131,263,287 - 131,287,183 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map874.64NCBI
Rbm34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,733,800 - 4,754,069 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,732,249 - 4,754,433 (+)NCBIChiLan1.0ChiLan1.0
RBM34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11215,695,090 - 215,723,466 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,695,166 - 215,723,408 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01210,676,840 - 210,706,360 (-)NCBIMhudiblu_PPA_v0panPan3
RBM34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,755,574 - 4,780,963 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,755,620 - 4,780,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,738,127 - 4,763,520 (+)NCBI
ROS_Cfam_1.044,777,806 - 4,803,174 (+)NCBI
ROS_Cfam_1.0 Ensembl44,777,832 - 4,803,172 (+)Ensembl
UMICH_Zoey_3.144,788,616 - 4,814,002 (+)NCBI
UNSW_CanFamBas_1.044,906,229 - 4,931,599 (+)NCBI
UU_Cfam_GSD_1.045,127,935 - 5,153,322 (+)NCBI
Rbm34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934441,096,471 - 41,116,009 (+)NCBI
SpeTri2.0NW_00493648417,261,715 - 17,281,240 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,306,821 - 72,335,619 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,304,264 - 72,334,359 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605574,337,488 - 74,368,049 (-)NCBIVero_WHO_p1.0
Rbm34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,304,205 - 15,325,344 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477515,293,143 - 15,325,344 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH134841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21954,936,547 - 54,936,729 (+)MAPPERmRatBN7.2
Rnor_6.01959,874,771 - 59,874,952NCBIRnor6.0
Rnor_5.01970,541,762 - 70,541,943UniSTSRnor5.0
RGSC_v3.41956,864,527 - 56,864,708UniSTSRGSC3.4
Celera1954,275,961 - 54,276,142UniSTS
Cytogenetic Map19q12UniSTS
RH140946  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21954,936,688 - 54,936,884 (+)MAPPERmRatBN7.2
Rnor_6.01959,874,912 - 59,875,107NCBIRnor6.0
Rnor_5.01970,541,903 - 70,542,098UniSTSRnor5.0
RGSC_v3.41956,864,668 - 56,864,863UniSTSRGSC3.4
Celera1954,276,102 - 54,276,297UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:210
Interacting mature miRNAs:253
Transcripts:ENSRNOT00000027145
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 22 37 22 19 22 1 1 74 24 35 11 1
Low 21 20 19 19 7 10 11 6 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027145   ⟹   ENSRNOP00000027145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)Ensembl
Rnor_6.0 Ensembl1959,874,752 - 59,894,937 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099190   ⟹   ENSRNOP00000081464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120307   ⟹   ENSRNOP00000089418
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)Ensembl
RefSeq Acc Id: NM_001014015   ⟹   NP_001014037
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21954,936,522 - 54,956,715 (-)NCBI
Rnor_6.01959,874,745 - 59,894,937 (-)NCBI
Rnor_5.01970,541,736 - 70,562,213 (-)NCBI
RGSC_v3.41956,864,501 - 56,885,217 (-)RGD
Celera1954,275,935 - 54,296,237 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601305   ⟹   XP_017456794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21954,936,516 - 54,956,810 (-)NCBI
Rnor_6.01959,874,745 - 59,894,981 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005496660
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21954,941,870 - 54,956,810 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001014037 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456794 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87155 (Get FASTA)   NCBI Sequence Viewer  
  EDL96777 (Get FASTA)   NCBI Sequence Viewer  
  Q5M9F1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001014037   ⟸   NM_001014015
- UniProtKB: Q5M9F1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017456794   ⟸   XM_017601305
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000027145   ⟸   ENSRNOT00000027145
RefSeq Acc Id: ENSRNOP00000089418   ⟸   ENSRNOT00000120307
RefSeq Acc Id: ENSRNOP00000081464   ⟸   ENSRNOT00000099190
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M9F1-F1-model_v2 AlphaFold Q5M9F1 1-428 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701254
Promoter ID:EPDNEW_R11778
Type:multiple initiation site
Name:Rbm34_1
Description:RNA binding motif protein 34
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01959,894,930 - 59,894,990EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310161 AgrOrtholog
BioCyc Gene G2FUF-5146 BioCyc
Ensembl Genes ENSRNOG00000020004 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027145 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000081464.1 UniProtKB/TrEMBL
  ENSRNOP00000089418.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027145 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000099190.1 UniProtKB/TrEMBL
  ENSRNOT00000120307.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133162 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM34_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM34_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:307956 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95242 IMAGE-MGC_LOAD
NCBI Gene 307956 ENTREZGENE
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbm34 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZSK8_RAT UniProtKB/TrEMBL
  A0A8I6A778_RAT UniProtKB/TrEMBL
  Q5M9F1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Rbm34  RNA binding motif protein 34  RGD1310161  similar to DNA segment, Chr 8, ERATO Doi 233, expressed  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310161  similar to DNA segment, Chr 8, ERATO Doi 233, expressed  RGD1310161_predicted  similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310161_predicted  similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted)  LOC307956_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307956_predicted  similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL