D16Rat58 Marker Search Result - Rat Genome Database

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Marker: D16Rat58

Symbol: D16Rat58
Previously known as: oxsts9764; R0221-B04; 
RGD ID: 41248
Expected Size: 171 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,896,259 - 64,896,432 (+)MAPPERmRatBN7.2
Rnor_6.01669,058,102 - 69,058,274NCBIRnor6.0
Rnor_5.01668,734,116 - 68,734,288UniSTSRnor5.0
RGSC_v3.41669,218,593 - 69,218,765UniSTSRGSC3.4
RGSC_v3.41669,218,407 - 69,218,766RGDRGSC3.4
RGSC_v3.11669,218,613 - 69,218,972RGD
Celera1662,816,493 - 62,816,665UniSTS
SHRSP x BN Map1630.54RGD
SHRSP x BN Map1630.54UniSTS
Cytogenetic Map16q12.3-q12.4UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Activ5  
Genes:   Rab11fip1  


Annotation



Strains and Sequence

Sequence
 
Forward Primer TGCTCTTTACCTGCCTTTCC
Reverse Primer CCCTGCTGTTGTGTTAAACCT
 
Template 
TGCTGCAGGTCGACTCTAGAGGATCCCCCCCCTGCTGTTGTGTTAAACCTCATCTCCAAAACAT
TTTAGGAGCACTGTAAAGGCTATTTATCAGGAGACACCAAACTTAGTCCTAAGAGCTAGTGACA
TCAAGAAACACACACACACACACACACACACACACACACACACACACACACAGGAAAGGCAGGT
AAAGAGCAATTTGGAGGCTGCTGAGATGGTTTAGCAGATAAGGTCACTGTGACCAACCCTGAAC
TAGAGTTAGGTCCCTGGGACTCATGTGGGGGAAGAGCCAAACTGACTCAAGTTGTCCTCTGAAC
TTTACATGTGTTTTACACACACATATACACACGCAGAGAGAGAGAGAGAGAGATAAAAGGANTG
TTCCTGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTNTCCTGT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1562965Rab11fip1RAB11 family interacting protein 1166488690264917491Rat

Nucleotide Sequences
GenBank Nucleotide JH618809.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 101180975 UniSTS
  498650 UniSTS