D11Rat88 Marker Search Result - Rat Genome Database

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Marker: D11Rat88

Symbol: D11Rat88
Previously known as: oxsts9313; R0092-B12; 
RGD ID: 39504
Expected Size: 245 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2111,041,931 - 1,042,176 (+)MAPPERmRatBN7.2
Rnor_6.011325,031 - 325,275NCBIRnor6.0
Rnor_5.011324,296 - 324,540UniSTSRnor5.0
RGSC_v3.411597,138 - 597,383RGDRGSC3.4
RGSC_v3.411597,139 - 597,383UniSTSRGSC3.4
RGSC_v3.111597,128 - 597,414RGD
Celera111,035,125 - 1,035,369UniSTS
RH 2.0 Map11665.4RGD
FHH x ACI Map110.0RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Tescar1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GAGGACAGTTGTGCTAAGGTCC
Reverse Primer AACCTCTGGCCTCCATTTTT
 
Template 
CTGCAGGTCGACTCTAGAGGATCCCCACCTGAGGTCAACCTCTGGCCTCCATTTTTATACACAC
ACACACACACACACACACACACACACACACACACTGTATATATATATATATATATGTATATATA
TATATGTATGTATATATACATATATTATATTATATTACATATACATATATTATGTATATATATA
TATGCTTGCCCCTGGGATGACACCAATCTCTGACACTATCAGTGATTCTCTTTTATGTTTATAG
ACAGGACCTTAGCACAACTGTCCTCTGAGAAACTCTACCCAGCAACTGACTGAAGTGGGTACCG
AGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGNGTGAAATTGTTATCCGCTCACAATTC
CACANAANATNCGAGCCGG
Strain, Expected Size(s)

ACI/N 241 AVN/Orl 249 BBDP/Rhw 245
BBDR/Rhw 245 BC/CpbU 241 BDIX/Han 245
BDVII/Cub 251 BN-Lx/Cub 245 BN/SsNHsd 245
BP/Cub 245 BUF/Pit 245 COP/OlaHsd 245
DA/PitN 241 DON/Melb 251 F344/Pit 251
FHH/Eur 245 GH/Omr 245 IS/Kyo 245
LE/Mol 245 LEW/Pit 245 LH/Mav 245
LN/Mav 245 LOU/CHan 247 M520/N 245
MHS/Gib 251 MNR/N 245 MNRA/N 245
MNS/Gib 245 MR/Pit 245 NEDH/K 251
NP9 245 ODU/N 245 OKA/Wsl 243
OM/Ztm 245 P5C 245 PVG/Pit 245
SD/Rij 251 SHR/OlaHsd 245 SHRSP/Riv 245
SR/Jr 245 SS/Jr 245 WAG/RijKyo 251
WF/Pit 251 WIST/Nhg 251 WKY/OlaHsd 245
WN/N 251


GenBank Nucleotide CH474018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat



Database
Acc Id
Source(s)
NCBI Gene 100303178 UniSTS