D11Rat88 Marker Search Result - Rat Genome Database

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General

Marker: D11Rat88

Symbol:

D11Rat88

Previously known as:

oxsts9313; R0092-B12;

RGD ID:

39504

Expected Size:

245 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	1,041,931 - 1,042,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	325,031 - 325,275	NCBI	Rnor6.0
Rnor_5.0	11	324,296 - 324,540	UniSTS	Rnor5.0
RGSC_v3.4	11	597,138 - 597,383	RGD	RGSC3.4
RGSC_v3.4	11	597,139 - 597,383	UniSTS	RGSC3.4
RGSC_v3.1	11	597,128 - 597,414	RGD
Celera	11	1,035,125 - 1,035,369	UniSTS
RH 2.0 Map	11	665.4	RGD
FHH x ACI Map	11	0.0	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Tescar1

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GAGGACAGTTGTGCTAAGGTCC
Reverse Primer	AACCTCTGGCCTCCATTTTT

Template	CTGCAGGTCGACTCTAGAGGATCCCCACCTGAGGTCAACCTCTGGCCTCCATTTTTATACACAC ACACACACACACACACACACACACACACACACACTGTATATATATATATATATATGTATATATA TATATGTATGTATATATACATATATTATATTATATTACATATACATATATTATGTATATATATA TATGCTTGCCCCTGGGATGACACCAATCTCTGACACTATCAGTGATTCTCTTTTATGTTTATAG ACAGGACCTTAGCACAACTGTCCTCTGAGAAACTCTACCCAGCAACTGACTGAAGTGGGTACCG AGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGNGTGAAATTGTTATCCGCTCACAATTC CACANAANATNCGAGCCGG

Strain Variation

Strain, Expected Size(s)

ACI/N	241
AVN/Orl	249
BBDP/Rhw	245
BBDR/Rhw	245
BC/CpbU	241
BDIX/Han	245
BDVII/Cub	251
BN-Lx/Cub	245
BN/SsNHsd	245
BP/Cub	245
BUF/Pit	245
COP/OlaHsd	245

DA/PitN	241
DON/Melb	251
F344/Pit	251
FHH/Eur	245
GH/Omr	245
IS/Kyo	245
LE/Mol	245
LEW/Pit	245
LH/Mav	245
LN/Mav	245
LOU/CHan	247
M520/N	245

MHS/Gib	251
MNR/N	245
MNRA/N	245
MNS/Gib	245
MR/Pit	245
NEDH/K	251
NP9	245
ODU/N	245
OKA/Wsl	243
OM/Ztm	245
P5C	245
PVG/Pit	245

SD/Rij	251
SHR/OlaHsd	245
SHRSP/Riv	245
SR/Jr	245
SS/Jr	245
WAG/RijKyo	251
WF/Pit	251
WIST/Nhg	251
WKY/OlaHsd	245
WN/N	251

Region

Nucleotide Sequences


GenBank Nucleotide	CH474018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	1	21836709	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100303178	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D11Rat88