Ncoa2 (nuclear receptor coactivator 2) - Rat Genome Database

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Gene: Ncoa2 (nuclear receptor coactivator 2) Rattus norvegicus
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Symbol: Ncoa2
Name: nuclear receptor coactivator 2
RGD ID: 620108
Description: Enables DNA polymerase binding activity and nuclear receptor binding activity. Involved in several processes, including positive regulation of female receptivity; positive regulation of nuclear receptor-mediated glucocorticoid signaling pathway; and response to estradiol. Located in dendritic spine. Used to study polycystic ovary syndrome. Human ortholog(s) of this gene implicated in acute myeloid leukemia; colorectal carcinoma; lung non-small cell carcinoma; and prostate adenocarcinoma. Orthologous to human NCOA2 (nuclear receptor coactivator 2); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glucocorticoid receptor interacting protein 1; glucocorticoid receptor-interacting protein 1; GRIP-1; Grip1; LOC102549300; NCoA-2; Tif2; transcriptional intermediary factor 2; uncharacterized LOC102549300
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8510,618,712 - 10,852,776 (+)NCBIGRCr8
mRatBN7.255,835,642 - 6,069,693 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl55,835,706 - 6,067,451 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx58,132,076 - 8,209,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.059,770,968 - 9,848,544 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.059,460,403 - 9,538,097 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.055,466,544 - 5,696,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl55,616,483 - 5,694,598 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0510,306,581 - 10,538,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.455,197,891 - 5,275,776 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.155,197,890 - 5,273,000 (+)NCBI
Celera55,570,901 - 5,648,759 (+)NCBICelera
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
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Original Reference(s)
Ncoa2Ratacute myeloid leukemia  ISONCOA2 (Homo sapiens)9590334human gene in a mouse model and DNA:translocation:exonRGD 
Ncoa2RatChronobiology Disorders  ISONcoa2 (Mus musculus)153002580 RGD 
Ncoa2Ratcolorectal adenocarcinoma  ISONCOA2 (Homo sapiens)153002579protein:increased expression:colorectal mucosa (human)RGD 
Ncoa2Ratcolorectal carcinoma amelioratesISONCOA2 (Homo sapiens)11085507human gene and cell line in a mouse modelRGD 
Ncoa2Ratcolorectal carcinoma disease_progressionISONCOA2 (Homo sapiens)153002577protein:increased expression:colorectum more ...RGD 
Ncoa2Rathepatocellular carcinoma exacerbatesISONcoa2 (Mus musculus)153002576 RGD 
Ncoa2Rathepatocellular carcinoma  ISONcoa2 (Mus musculus)153002573 RGD 
Ncoa2Ratlung non-small cell carcinoma  ISONCOA2 (Homo sapiens)153002581DNA:SNPs:introns: (rs2926702 and rs11993276) (human)RGD 
Ncoa2Ratmalignant pleural mesothelioma amelioratesISONCOA2 (Homo sapiens)153002578protein:increased expression:mesothelium of pleural cavity (human)RGD 
Ncoa2Ratpolycystic ovary syndrome  IDA 152985548 RGD 
Ncoa2RatPregnancy Complications  IEP 5688349mRNA:decreased expression:uterus (rat)RGD 
Ncoa2Ratprostate adenocarcinoma amelioratesISONCOA2 (Homo sapiens)153002575human cells in mouse modelRGD 
Ncoa2Ratprostate cancer  ISONCOA2 (Homo sapiens)5688351mRNA:increased expression:prostate (human)RGD 
Ncoa2RatProstatic Neoplasms  ISONCOA2 (Homo sapiens)8693397 RGD 
Ncoa2Ratstomach cancer  ISONCOA2 (Homo sapiens)153002574protein:increased expression:stomach (human)RGD 
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Original Reference(s)
Ncoa2RatBreast Neoplasms  ISONCOA2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20332317
Ncoa2RatProstatic Neoplasms  ISONCOA2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12237244

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Original Reference(s)
Ncoa2Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of NCOA2 mRNA]CTDPMID:31150632
Ncoa2Rat(-)-epigallocatechin 3-gallate multiple interactionsISONCOA2 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of NCOA2 mRNACTDPMID:22079256
Ncoa2Rat(R)-linalyl acetate multiple interactionsISONCOA2 (Homo sapiens)6480464NCOA2 protein promotes the reaction [linalyl acetate results in increased activity of ESR1 protein]CTDPMID:31393563
Ncoa2Rat(S)-colchicine multiple interactionsISONCOA2 (Homo sapiens)6480464Colchicine inhibits the reaction [Chenodeoxycholic Acid promotes the reaction [NR1H4 protein affects the localization of NCOA2 protein]]CTDPMID:25257666
Ncoa2Rat1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane multiple interactionsISONcoa2 (Mus musculus)6480464NCOA2 protein promotes the reaction [2 more ...CTDPMID:27634370
Ncoa2Rat1,2-dimethylhydrazine decreases expressionISONcoa2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NCOA2 mRNACTDPMID:22206623
Ncoa2Rat17beta-estradiol multiple interactionsISONCOA2 (Homo sapiens)6480464[Estradiol binds to ESR2 protein] promotes the reaction [NCOA2 protein binds to CST5 promoter] more ...CTDPMID:10964929 more ...
Ncoa2Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of NCOA2 mRNACTDPMID:32145629
Ncoa2Rat17beta-estradiol multiple interactionsISONcoa2 (Mus musculus)6480464NCOA2 protein inhibits the reaction [ESR2 protein alternative form inhibits the reaction [Estradiol results in increased expression of ESR2 protein]] more ...CTDPMID:27634370
Ncoa2Rat17beta-estradiol affects localizationISONcoa2 (Mus musculus)6480464Estradiol affects the localization of NCOA2 proteinCTDPMID:17556502
Ncoa2Rat17beta-estradiol increases expressionISONCOA2 (Homo sapiens)6480464Estradiol results in increased expression of NCOA2 mRNA and Estradiol results in increased expression of NCOA2 proteinCTDPMID:16739346 and PMID:31646340
Ncoa2Rat17beta-estradiol affects bindingISONCOA2 (Homo sapiens)6480464[Estradiol binds to ESR1 protein] which binds to NCOA2 protein and [Estradiol binds to ESR2 protein] which binds to NCOA2 proteinCTDPMID:15123288
Ncoa2Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one multiple interactionsISONCOA2 (Homo sapiens)6480464[Metribolone binds to and affects the folding of AR protein] promotes the reaction [AR protein modified form binds to NCOA2 protein modified form] more ...CTDPMID:19131511 and PMID:28751236
Ncoa2Rat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISONCOA2 (Homo sapiens)6480464Dihydrotestosterone promotes the reaction [NCOA2 protein binds to KLK3 promoter] more ...CTDPMID:15336702 more ...
Ncoa2Rat2,2'-Dihydroxy-4-methoxybenzophenone multiple interactionsISONCOA2 (Homo sapiens)6480464dioxybenzone promotes the reaction [NCOA2 protein binds to PPARG protein]CTDPMID:32407875
Ncoa2Rat2,3,4,5-Tetrachloro-4'-biphenylol multiple interactionsISONCOA2 (Homo sapiens)64804642' more ...CTDPMID:10964929
Ncoa2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONCOA2 (Homo sapiens)6480464NCOA2 protein affects the reaction [Tetrachlorodibenzodioxin results in increased expression of CYP1A1 mRNA] more ...CTDPMID:12024042 more ...
Ncoa2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of NCOA2 mRNACTDPMID:32109520
Ncoa2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONcoa2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NCOA2 mRNACTDPMID:21570461
Ncoa2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISONCOA2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of NCOA2 mRNACTDPMID:12377990 and PMID:15345368

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Biological Process
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Original Reference(s)
Ncoa2Ratcellular response to hormone stimulus involved_inIBAPANTHER:PTN000074430 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ncoa2Ratcellular response to Thyroglobulin triiodothyronine acts_upstream_of_or_withinISONcoa2 (Mus musculus)1624291 PMID:24550004RGDPMID:24550004
Ncoa2Ratcellular response to Thyroglobulin triiodothyronine acts_upstream_of_or_withinIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratcerebellum development  IEP 2293531 RGD 
Ncoa2Ratcircadian regulation of gene expression involved_inIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratcircadian regulation of gene expression involved_inISONcoa2 (Mus musculus)1624291 PMID:24529706RGDPMID:24529706
Ncoa2Ratcircadian regulation of gene expression involved_inISSUniProtKB:Q610261600115GO_REF:0000024UniProtGO_REF:0000024
Ncoa2Ratcircadian rhythm involved_inISONcoa2 (Mus musculus)1624291 PMID:24529706RGDPMID:24529706
Ncoa2Ratcircadian rhythm involved_inIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratlocomotor rhythm involved_inIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratlocomotor rhythm involved_inISONcoa2 (Mus musculus)1624291 PMID:24529706RGDPMID:24529706
Ncoa2Ratmale gonad development  IEP 1642058 RGD 
Ncoa2Ratnegative regulation of DNA-templated transcription acts_upstream_of_or_withinIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnegative regulation of DNA-templated transcription acts_upstream_of_or_withinISONcoa2 (Mus musculus)1624291 PMID:8643509RGDPMID:8643509
Ncoa2Ratnegative regulation of smoothened signaling pathway involved_inIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnegative regulation of smoothened signaling pathway involved_inISONCOA2 (Homo sapiens)1624291 PMID:39531503RGDPMID:39531503
Ncoa2Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISONcoa2 (Mus musculus)1624291 PMID:8643509RGDPMID:8643509
Ncoa2Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratpositive regulation of DNA-templated transcription involved_inIEAGO:00037131600115GO_REF:0000108GOCGO_REF:0000108
Ncoa2Ratpositive regulation of female receptivity  IMP 5688243 RGD 
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Cellular Component
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Original Reference(s)
Ncoa2Ratcytoplasm located_inIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratcytoplasm located_inISONcoa2 (Mus musculus)1624291 PMID:11675124RGDPMID:11675124
Ncoa2Ratdendritic spine  IDA 5688258 RGD 
Ncoa2Ratnuclear body located_inIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnuclear body located_inISONCOA2 (Homo sapiens)1624291 RGDGO_REF:0000052
Ncoa2Ratnucleoplasm located_inISONCOA2 (Homo sapiens)1624291 RGDGO_REF:0000052
Ncoa2Ratnucleoplasm located_inIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Ncoa2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Ncoa2Ratnucleus located_inIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnucleus located_inISONcoa2 (Mus musculus)1624291 PMID:11675124 and PMID:12130539RGDPMID:11675124 and PMID:12130539
Ncoa2Ratnucleus is_active_inIBAFB:FBgn0041092 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ncoa2Ratnucleus located_inIEAInterPro:IPR010011 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ncoa2Ratnucleus located_inIEAUniRule:UR0007347581600115GO_REF:0000104UniProtGO_REF:0000104
Ncoa2Ratnucleus located_inIEAInterPro:IPR0174261600115GO_REF:0000002InterProGO_REF:0000002
Ncoa2Ratprotein-containing complex part_ofISONCOA2 (Homo sapiens)1624291 PMID:15641800RGDPMID:15641800
Ncoa2Ratprotein-containing complex part_ofIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2RatRNA polymerase II transcription regulator complex part_ofISONCOA2 (Homo sapiens)1624291 PMID:15258145RGDPMID:15258145
Ncoa2Rattranscription regulator complex part_ofISONcoa2 (Mus musculus)1624291 PMID:21152046RGDPMID:21152046
Ncoa2Rattranscription regulator complex part_ofIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
Ncoa2Rataryl hydrocarbon receptor binding enablesIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Rataryl hydrocarbon receptor binding enablesISONCOA2 (Homo sapiens)1624291UniProtKB:P35869 and PMID:15641800RGDPMID:15641800
Ncoa2Ratchromatin binding enablesIEAUniProtKB:Q61026 and ensembl:ENSMUSP000000060371600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratchromatin binding enablesISONcoa2 (Mus musculus)1624291 PMID:16109736RGDPMID:16109736
Ncoa2RatDNA polymerase binding  IPIPolb (Rattus norvegicus)5688251 RGD 
Ncoa2Ratnuclear estrogen receptor binding  IPIESR1 (Homo sapiens)5688148 RGD 
Ncoa2Ratnuclear estrogen receptor binding  IPIESR2 (Homo sapiens)5688148 RGD 
Ncoa2Ratnuclear glucocorticoid receptor binding  IPINR3C1 (Homo sapiens)633360 RGD 
Ncoa2Ratnuclear receptor binding enablesISONCOA2 (Homo sapiens)1624291UniProtKB:P24468 more ...RGDPMID:10478845 and PMID:18798693
Ncoa2Ratnuclear receptor binding enablesIBAFB:FBgn0041092 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ncoa2Ratnuclear receptor binding enablesIEAUniProtKB:Q15596 and ensembl:ENSP000003999681600115GO_REF:0000107EnsemblGO_REF:0000107
Ncoa2Ratnuclear receptor binding enablesIEAInterPro:IPR014920 and InterPro:IPR0370771600115GO_REF:0000002InterProGO_REF:0000002
Ncoa2Ratnuclear receptor binding enablesIEAUniRule:UR0007347581600115GO_REF:0000104UniProtGO_REF:0000104
Ncoa2Ratnuclear receptor binding  IPITHRA (Homo sapiens)633360 RGD 
Ncoa2Ratnuclear receptor binding  IPIPGR (Homo sapiens)5688148Pgr-BRGD 
Ncoa2Ratnuclear receptor binding  IPIESR1 (Homo sapiens)5688148 RGD 
Ncoa2Ratnuclear receptor binding  IPINR3C1 (Homo sapiens)633360 RGD 
Ncoa2Ratnuclear retinoic acid receptor binding  IPIRarb (Rattus norvegicus)5688233in presence of retinoic acidRGD 
Ncoa2Ratnuclear retinoid X receptor binding  IPIRxra (Rattus norvegicus)5688233in presence of retinoic acidRGD 
Ncoa2Ratnuclear thyroid hormone receptor binding  IPITHRA (Homo sapiens)633360 RGD 
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RGD Manual Annotations


  

Imported Annotations - PID (archival)

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Original Reference(s)
Ncoa2Rathypoxia inducible factor pathway   ISONCOA2 (Homo sapiens)6484113 PIDPID:200202

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#
Reference Title
Reference Citation
1. Acute disruption of select steroid receptor coactivators prevents reproductive behavior in rats and unmasks genetic adaptation in knockout mice. Apostolakis EM, etal., Mol Endocrinol. 2002 Jul;16(7):1511-23.
2. The mutational landscape of prostate cancer. Barbieri CE, etal., Eur Urol. 2013 Oct;64(4):567-76. doi: 10.1016/j.eururo.2013.05.029. Epub 2013 May 18.
3. Androgen receptor coregulators and their involvement in the development and progression of prostate cancer. Chmelar R, etal., Int J Cancer. 2007 Feb 15;120(4):719-33.
4. Phosphorylation of the AMPA receptor subunit GluR2 differentially regulates its interaction with PDZ domain-containing proteins. Chung HJ, etal., J Neurosci. 2000 Oct 1;20(19):7258-67.
5. Coactivator SRC-2-dependent metabolic reprogramming mediates prostate cancer survival and metastasis. Dasgupta S, etal., J Clin Invest. 2015 Mar 2;125(3):1174-88. doi: 10.1172/JCI76029. Epub 2015 Feb 9.
6. MOZ-TIF2-induced acute myeloid leukemia requires the MOZ nucleosome binding motif and TIF2-mediated recruitment of CBP. Deguchi K, etal., Cancer Cell. 2003 Mar;3(3):259-71.
7. Genetic and Environmental Models of Circadian Disruption Link SRC-2 Function to Hepatic Pathology. Fleet T, etal., J Biol Rhythms. 2016 Oct;31(5):443-60. doi: 10.1177/0748730416657921. Epub 2016 Jul 17.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. Estrogen receptor alpha/beta, AIB1, and TIF2 in colorectal carcinogenesis: do coregulators have prognostic significance? Grivas PD, etal., Int J Colorectal Dis. 2009 Jun;24(6):613-22. doi: 10.1007/s00384-009-0647-9. Epub 2009 Feb 6.
11. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
12. Differential regulation of steroid nuclear receptor coregulator expression between normal and neoplastic prostate epithelial cells. Heemers HV, etal., Prostate. 2010 Jun 15;70(9):959-70.
13. CASK associates with glutamate receptor interacting protein and signaling molecules. Hong CJ and Hsueh YP, Biochem Biophys Res Commun. 2006 Dec 22;351(3):771-6. Epub 2006 Oct 30.
14. Uterine progesterone signaling is a target for metformin therapy in PCOS-like rats. Hu M, etal., J Endocrinol. 2018 May;237(2):123-137. doi: 10.1530/JOE-18-0086. Epub 2018 Mar 13.
15. Differential expression of p160 steroid receptor coactivators in the rat testis and epididymis. Igarashi-Migitaka J, etal., Eur J Endocrinol. 2005 Oct;153(4):595-604.
16. Novel glucocorticoid receptor coactivator effector mechanisms. Jenkins BD, etal., Trends Endocrinol Metab. 2001 Apr;12(3):122-6.
17. Sustained expression of steroid receptor coactivator SRC-2/TIF-2 is associated with better prognosis in malignant pleural mesothelioma. Jennings CJ, etal., J Thorac Oncol. 2012 Jan;7(1):243-8. doi: 10.1097/JTO.0b013e31822f6544.
18. Interaction of DNA polymerase beta with GRIP1 during meiosis. Jonason AS, etal., Chromosoma. 2001 Nov;110(6):402-10. Epub 2001 Sep 12.
19. Subfertility linked to combined luteal insufficiency and uterine progesterone resistance. Konno T, etal., Endocrinology. 2010 Sep;151(9):4537-50. Epub 2010 Jul 21.
20. Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study. Lee Y, etal., Carcinogenesis. 2013 Feb;34(2):307-13. doi: 10.1093/carcin/bgs356. Epub 2012 Nov 8.
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PMID:8643509   PMID:10478845   PMID:11583620   PMID:11675124   PMID:12130539   PMID:12709428   PMID:15001550   PMID:15072553   PMID:15383530   PMID:15539428   PMID:15641800   PMID:16109736  
PMID:16148126   PMID:17363140   PMID:18798693   PMID:19039140   PMID:23132854   PMID:24529706   PMID:24550004   PMID:24571987  



Ncoa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8510,618,712 - 10,852,776 (+)NCBIGRCr8
mRatBN7.255,835,642 - 6,069,693 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl55,835,706 - 6,067,451 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx58,132,076 - 8,209,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.059,770,968 - 9,848,544 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.059,460,403 - 9,538,097 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.055,466,544 - 5,696,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl55,616,483 - 5,694,598 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0510,306,581 - 10,538,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.455,197,891 - 5,275,776 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.155,197,890 - 5,273,000 (+)NCBI
Celera55,570,901 - 5,648,759 (+)NCBICelera
Cytogenetic Map5q11NCBI
NCOA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38870,109,782 - 70,456,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl870,109,782 - 70,403,808 (-)EnsemblGRCh38hg38GRCh38
GRCh37871,022,017 - 71,316,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36871,186,821 - 71,478,574 (-)NCBINCBI36Build 36hg18NCBI36
Build 34871,186,820 - 71,478,574NCBI
Celera867,021,935 - 67,313,703 (-)NCBICelera
Cytogenetic Map8q13.3NCBI
HuRef866,517,566 - 66,809,329 (-)NCBIHuRef
CHM1_1871,079,808 - 71,371,655 (-)NCBICHM1_1
T2T-CHM13v2.0870,539,621 - 70,834,144 (-)NCBIT2T-CHM13v2.0
Ncoa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,209,329 - 13,444,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,209,329 - 13,444,307 (-)EnsemblGRCm39 Ensembl
GRCm38113,139,105 - 13,374,227 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,139,105 - 13,374,083 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,129,240 - 13,364,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,127,689 - 13,359,278 (-)NCBIMGSCv36mm8
Celera113,103,226 - 13,334,430 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.12NCBI
Ncoa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554449,313,447 - 9,584,913 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554449,313,748 - 9,587,109 (+)NCBIChiLan1.0ChiLan1.0
NCOA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2785,839,497 - 86,141,138 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1861,469,337 - 61,770,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0866,632,139 - 66,929,526 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1868,293,012 - 68,480,104 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl868,293,018 - 68,400,479 (-)Ensemblpanpan1.1panPan2
NCOA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12919,253,849 - 19,471,640 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2919,222,842 - 19,545,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2919,511,986 - 19,805,562 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02919,347,144 - 19,643,120 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2919,347,185 - 19,642,297 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12919,386,646 - 19,682,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02919,452,837 - 19,748,399 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02919,733,575 - 20,029,399 (-)NCBIUU_Cfam_GSD_1.0
Ncoa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530359,680,707 - 59,940,562 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649614,844,855 - 15,016,454 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649614,844,923 - 15,102,922 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl464,954,238 - 65,246,572 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1464,888,029 - 65,245,757 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2470,584,741 - 70,791,313 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCOA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1865,855,232 - 66,151,733 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl865,855,235 - 66,040,947 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603975,279,759 - 75,586,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncoa2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474420,938,555 - 21,078,690 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474420,795,385 - 21,078,706 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ncoa2
1177 total Variants

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:94
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000011026
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat

1 to 10 of 10 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000011026   ⟹   ENSRNOP00000011026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl55,847,334 - 6,067,451 (+)Ensembl
Rnor_6.0 Ensembl55,616,483 - 5,694,598 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095919   ⟹   ENSRNOP00000092311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl55,835,706 - 6,029,139 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119206   ⟹   ENSRNOP00000093156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl55,847,334 - 6,067,451 (+)Ensembl
RefSeq Acc Id: NM_031822   ⟹   NP_114010
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,618,722 - 10,852,776 (+)NCBI
mRatBN7.255,835,642 - 6,069,693 (+)NCBI
Rnor_6.055,616,483 - 5,694,598 (+)NCBI
Rnor_5.0510,306,581 - 10,538,264 (+)NCBI
RGSC_v3.455,197,891 - 5,275,776 (+)RGD
Celera55,570,901 - 5,648,759 (+)RGD
Sequence:
RefSeq Acc Id: XM_006237744   ⟹   XP_006237806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,618,712 - 10,852,776 (+)NCBI
mRatBN7.255,835,642 - 6,069,693 (+)NCBI
Rnor_6.055,466,544 - 5,696,540 (+)NCBI
Rnor_5.0510,306,581 - 10,538,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237747   ⟹   XP_006237809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,768,214 - 10,852,776 (+)NCBI
mRatBN7.255,985,136 - 6,069,693 (+)NCBI
Rnor_6.055,613,995 - 5,696,540 (+)NCBI
Rnor_5.0510,306,581 - 10,538,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593660   ⟹   XP_017449149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,619,081 - 10,852,776 (+)NCBI
mRatBN7.255,836,034 - 6,069,693 (+)NCBI
Rnor_6.055,466,892 - 5,696,540 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110852   ⟹   XP_038966780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,618,730 - 10,852,776 (+)NCBI
mRatBN7.255,835,654 - 6,069,693 (+)NCBI
RefSeq Acc Id: XM_039110853   ⟹   XP_038966781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,618,712 - 10,852,776 (+)NCBI
mRatBN7.255,835,642 - 6,069,693 (+)NCBI
RefSeq Acc Id: XM_063288483   ⟹   XP_063144553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,620,293 - 10,852,776 (+)NCBI
RefSeq Acc Id: XM_063288484   ⟹   XP_063144554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,746,663 - 10,852,776 (+)NCBI
RefSeq Acc Id: XM_063288485   ⟹   XP_063144555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,620,269 - 10,852,776 (+)NCBI
RefSeq Acc Id: XM_063288486   ⟹   XP_063144556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8510,620,087 - 10,852,776 (+)NCBI
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_114010   ⟸   NM_031822
- UniProtKB: Q9WUI9 (UniProtKB/Swiss-Prot),   F1MA61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237806   ⟸   XM_006237744
- Peptide Label: isoform X1
- UniProtKB: Q9WUI9 (UniProtKB/Swiss-Prot),   F1MA61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237809   ⟸   XM_006237747
- Peptide Label: isoform X1
- UniProtKB: Q9WUI9 (UniProtKB/Swiss-Prot),   F1MA61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449149   ⟸   XM_017593660
- Peptide Label: isoform X1
- UniProtKB: Q9WUI9 (UniProtKB/Swiss-Prot),   F1MA61 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011026   ⟸   ENSRNOT00000011026
bHLH   PAS

Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUI9-F1-model_v2 AlphaFold Q9WUI9 1-1465 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 47 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-42249 BioCyc
Ensembl Genes ENSRNOG00000007975 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000011026 ENTREZGENE
  ENSRNOT00000119206 ENTREZGENE
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
  6.10.140.20 UniProtKB/Swiss-Prot
  PAS domain UniProtKB/Swiss-Prot
InterPro bHLH_dom UniProtKB/Swiss-Prot
  DUF1518 UniProtKB/Swiss-Prot
  DUF4927 UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  NCOA2 UniProtKB/Swiss-Prot
  Nuc_rcpt_coact UniProtKB/Swiss-Prot
  Nuc_rcpt_coact_Ncoa-typ UniProtKB/Swiss-Prot
  Nuc_rcpt_coact_Ncoa_int_sf UniProtKB/Swiss-Prot
  Nuclear_rcpt_coactivator UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
  PAS-like_dom_sf UniProtKB/Swiss-Prot
  PAS_fold UniProtKB/Swiss-Prot
  SRC/p160_LXXLL UniProtKB/Swiss-Prot
KEGG Report rno:83724 UniProtKB/Swiss-Prot
NCBI Gene 83724 ENTREZGENE
PANTHER PTHR10684 UniProtKB/Swiss-Prot
  PTHR10684:SF2 UniProtKB/Swiss-Prot
Pfam DUF1518 UniProtKB/Swiss-Prot
  DUF4927 UniProtKB/Swiss-Prot
  NCOA_u2 UniProtKB/Swiss-Prot
  Nuc_rec_co-act UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
  PAS_11 UniProtKB/Swiss-Prot
  SRC-1 UniProtKB/Swiss-Prot
PhenoGen Ncoa2 PhenoGen
PIRSF Nuclear_receptor_coactivator UniProtKB/Swiss-Prot
PROSITE BHLH UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007975 RatGTEx
SMART DUF1518 UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
1 to 40 of 47 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ncoa2  nuclear receptor coactivator 2  LOC102549300  uncharacterized LOC102549300  Data merged from RGD:7582276 737654 PROVISIONAL
2013-12-18 LOC102549300  uncharacterized LOC102549300      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-02-26 Ncoa2  nuclear receptor coactivator 2      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Ncoa2  nuclear receptor coactivator 2      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_domains contains three short conserved NR box motifs 633360