Wnt9b (Wnt family member 9B) - Rat Genome Database

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Gene: Wnt9b (Wnt family member 9B) Rattus norvegicus
Analyze
Symbol: Wnt9b
Name: Wnt family member 9B
RGD ID: 1309574
Description: Predicted to enable co-receptor binding activity; cytokine activity; and frizzled binding activity. Predicted to be involved in several processes, including Wnt signaling pathway; midbrain dopaminergic neuron differentiation; and negative regulation of stem cell population maintenance. Predicted to act upstream of or within several processes, including chordate embryonic development; kidney development; and reproductive structure development. Predicted to be active in extracellular space. Orthologous to human WNT9B (Wnt family member 9B); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; basal cell carcinoma pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-Tetrachlorodibenzofuran; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303586; protein Wnt-9b; wingless related MMTV integration site 9B; wingless-type MMTV integration site 9B; wingless-type MMTV integration site family, member 9B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81089,135,362 - 89,157,065 (-)NCBIGRCr8
mRatBN7.21088,635,330 - 88,657,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,673,741 - 93,695,456 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01093,138,896 - 93,160,602 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01088,532,248 - 88,553,957 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,785,892 - 91,808,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,552,384 - 91,574,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,880,020 - 92,901,641 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,897,918 - 92,916,111 (-)NCBI
Celera1087,334,808 - 87,356,461 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRatchronic kidney disease  ISOWNT9B (Homo sapiens)8554872ClinVar Annotator: match by term: Chronic kidney diseaseClinVarPMID:34145744
Wnt9bRatgenetic disease  ISOWNT9B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
Wnt9bRathereditary breast ovarian cancer syndrome  ISOWNT9B (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:38922859
Wnt9bRatprogressive myoclonus epilepsy  ISOWNT9B (Homo sapiens)8554872ClinVar Annotator: match by term: Progressive myoclonic epilepsyClinVarPMID:21549339 and PMID:28492532
Wnt9bRatrenal hypoplasia  ISOWNT9B (Homo sapiens)8554872ClinVar Annotator: match by term: Renal hypoplasiaClinVarPMID:34145744

1 to 20 of 41 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of WNT9B mRNA]CTDPMID:31150632
Wnt9bRat1,2-dimethylhydrazine decreases expressionISOWnt9b (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of WNT9B mRNACTDPMID:22206623
Wnt9bRat1,2-dimethylhydrazine multiple interactionsISOWnt9b (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in decreased expression of WNT9B mRNA]CTDPMID:22206623
Wnt9bRat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Wnt9bRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOWnt9b (Mus musculus)64804642 more ...CTDPMID:38648751
Wnt9bRat4,4'-sulfonyldiphenol increases methylationISOWnt9b (Mus musculus)6480464bisphenol S results in increased methylation of WNT9B exonCTDPMID:33297965
Wnt9bRataflatoxin B1 decreases methylationISOWNT9B (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of WNT9B 3' UTRCTDPMID:30157460
Wnt9bRatbenzo[a]pyrene multiple interactionsISOWnt9b (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to WNT9B promoter]CTDPMID:19654925
Wnt9bRatbenzo[a]pyrene increases methylationISOWNT9B (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of WNT9B 3' UTR more ...CTDPMID:27901495
Wnt9bRatbis(2-ethylhexyl) phthalate multiple interactionsEXP 6480464[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of WNT9B mRNACTDPMID:31199487
Wnt9bRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of WNT9B mRNACTDPMID:25181051
Wnt9bRatButylbenzyl phthalate multiple interactionsEXP 6480464[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of WNT9B mRNACTDPMID:31199487
Wnt9bRatcadmium dichloride increases expressionISOWnt9b (Mus musculus)6480464Cadmium Chloride results in increased expression of WNT9B mRNACTDPMID:20478370
Wnt9bRatcarbon nanotube decreases expressionISOWnt9b (Mus musculus)6480464Nanotubes and Carbon analog results in decreased expression of WNT9B mRNACTDPMID:25620056
Wnt9bRatCGP 52608 multiple interactionsISOWNT9B (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to WNT9B gene]CTDPMID:28238834
Wnt9bRatchlorpyrifos decreases expressionEXP 6480464Chlorpyrifos results in decreased expression of WNT9B mRNACTDPMID:18502319
Wnt9bRatcocaine decreases expressionEXP 6480464Cocaine results in decreased expression of WNT9B mRNACTDPMID:27899881
Wnt9bRatdiazinon decreases expressionEXP 6480464Diazinon results in decreased expression of WNT9B mRNACTDPMID:18502319
Wnt9bRatdiazinon affects expressionEXP 6480464Diazinon affects the expression of WNT9B mRNACTDPMID:19130878
Wnt9bRatdibutyl phthalate multiple interactionsEXP 6480464[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of WNT9B mRNACTDPMID:31199487

1 to 20 of 41 rows

Biological Process
1 to 20 of 35 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRatbiological_process  ND 159840707/2010: no relevant rat dataRGD 
Wnt9bRatbranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 more ...RGDPMID:16054034
Wnt9bRatbranching morphogenesis of an epithelial tube acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatcanonical Wnt signaling pathway involved_inISOWNT9B (Homo sapiens)1624291 PMID:28733458RGDPMID:28733458
Wnt9bRatcanonical Wnt signaling pathway acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:88276 PMID:21350016RGDPMID:21350016
Wnt9bRatcanonical Wnt signaling pathway involved_inIBAFB:FBgn0004360 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Wnt9bRatcell fate commitment involved_inIBAFB:FBgn0284084 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Wnt9bRatcellular response to starvation acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291 PMID:23260145RGDPMID:23260145
Wnt9bRatcollecting duct development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatembryonic cranial skeleton morphogenesis acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:1856821 more ...RGDPMID:16054034 and PMID:16998816
Wnt9bRatestablishment of planar polarity involved in nephron morphogenesis acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 more ...RGDPMID:19543268
Wnt9bRatin utero embryonic development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatkidney development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291 PMID:19543268RGDPMID:19543268
Wnt9bRatkidney morphogenesis acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526436 more ...RGDPMID:16054034
Wnt9bRatkidney rudiment formation acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatmale genitalia development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatmesenchymal stem cell maintenance involved in nephron morphogenesis acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:21350016RGDPMID:21350016
Wnt9bRatmesonephric duct formation acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
Wnt9bRatmesonephric tubule development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 more ...RGDPMID:16054034 and PMID:20040500
Wnt9bRatmetanephric tubule development acts_upstream_of_or_withinISOWnt9b (Mus musculus)1624291MGI:3526437 PMID:16054034RGDPMID:16054034
1 to 20 of 35 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRatextracellular space is_active_inIBAFB:FBgn0284084 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRatWnt signaling pathway  ISOWnt9b (Mus musculus)2301993 RGD 
Wnt9bRatWnt signaling, canonical pathway   ISOWNT9B (Homo sapiens)2313743 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt9bRatbasal cell carcinoma pathway  IEA 6907045 KEGGrno:05217
Wnt9bRatHedgehog signaling pathway   IEA 6907045 KEGGrno:04340
Wnt9bRatWnt signaling pathway  IEA 6907045 KEGGrno:04310

1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
9. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
1 to 9 of 9 rows
PMID:16054034   PMID:16998816   PMID:19543268   PMID:20040500   PMID:20093360   PMID:21350016   PMID:23260145   PMID:25640183   PMID:28733458  



Wnt9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81089,135,362 - 89,157,065 (-)NCBIGRCr8
mRatBN7.21088,635,330 - 88,657,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,673,741 - 93,695,456 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01093,138,896 - 93,160,602 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01088,532,248 - 88,553,957 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,785,892 - 91,808,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,552,384 - 91,574,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,880,020 - 92,901,641 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,897,918 - 92,916,111 (-)NCBI
Celera1087,334,808 - 87,356,461 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
WNT9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381746,833,189 - 46,886,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1746,833,201 - 46,886,730 (+)EnsemblGRCh38hg38GRCh38
GRCh371744,928,949 - 44,964,104 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,283,967 - 42,309,436 (+)NCBINCBI36Build 36hg18NCBI36
Build 341742,283,966 - 42,309,436NCBI
Celera1741,378,455 - 41,403,922 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,307,364 - 40,332,821 (+)NCBIHuRef
CHM1_11744,993,095 - 45,018,563 (+)NCBICHM1_1
T2T-CHM13v2.01747,694,652 - 47,748,202 (+)NCBIT2T-CHM13v2.0
Wnt9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,618,188 - 103,666,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,618,190 - 103,640,647 (-)EnsemblGRCm39 Ensembl
GRCm3811103,727,362 - 103,775,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,727,364 - 103,749,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,588,677 - 103,611,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,543,453 - 103,565,911 (-)NCBIMGSCv36mm8
Celera11115,442,222 - 115,464,694 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.47NCBI
Wnt9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547810,816,405 - 10,841,416 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547810,816,405 - 10,841,416 (+)NCBIChiLan1.0ChiLan1.0
WNT9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21918,130,185 - 18,165,182 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11720,096,138 - 20,131,144 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01710,616,957 - 10,651,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11710,801,176 - 10,818,516 (-)NCBIpanpan1.1PanPan1.1panPan2
WNT9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,157,607 - 10,172,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl910,149,842 - 10,172,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,125,720 - 10,132,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0911,755,792 - 11,762,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl911,740,175 - 11,762,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1910,766,706 - 10,773,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,748,106 - 16,755,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,695,500 - 16,702,675 (-)NCBIUU_Cfam_GSD_1.0
Wnt9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,290,995 - 17,299,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,899,039 - 1,939,561 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365411,899,039 - 1,939,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,709,046 - 17,733,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,709,046 - 17,733,434 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21217,733,977 - 17,737,390 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11660,560,132 - 60,596,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1660,581,258 - 60,586,596 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607731,283,829 - 31,320,517 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,957,153 - 2,976,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,971,658 - 2,979,864 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Wnt9b
192 total Variants

Predicted Target Of
Summary Value
Count of predictions:640
Count of miRNA genes:267
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000005074
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 77 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat

1 to 10 of 77 rows
RH127598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21088,635,483 - 88,635,688 (+)MAPPERmRatBN7.2
Rnor_6.01091,786,046 - 91,786,250NCBIRnor6.0
Rnor_5.01091,552,538 - 91,552,742UniSTSRnor5.0
RGSC_v3.41092,880,173 - 92,880,377UniSTSRGSC3.4
Celera1087,334,961 - 87,335,165UniSTS
RH 3.4 Map10913.5UniSTS
Cytogenetic Map10q32.1UniSTS
UniSTS:471334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21088,639,267 - 88,640,158 (+)MAPPERmRatBN7.2
Rnor_6.01091,789,832 - 91,790,721NCBIRnor6.0
Rnor_5.01091,556,324 - 91,557,213UniSTSRnor5.0
RGSC_v3.41092,883,959 - 92,884,848UniSTSRGSC3.4
Celera1087,338,743 - 87,339,632UniSTS
Cytogenetic Map10q32.1UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 83 82 51 25 51 6 209 96 93 45 59 31



Ensembl Acc Id: ENSRNOT00000005074   ⟹   ENSRNOP00000005074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)Ensembl
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078561   ⟹   ENSRNOP00000071955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1091,787,848 - 91,797,317 (-)Ensembl
RefSeq Acc Id: NM_001107055   ⟹   NP_001100525
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81089,135,363 - 89,157,065 (-)NCBI
mRatBN7.21088,635,331 - 88,657,035 (-)NCBI
Rnor_6.01091,785,893 - 91,807,937 (-)NCBI
Rnor_5.01091,552,384 - 91,574,275 (-)NCBI
RGSC_v3.41092,880,020 - 92,901,641 (-)RGD
Celera1087,334,808 - 87,356,461 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247530   ⟹   XP_006247592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81089,135,362 - 89,150,799 (-)NCBI
mRatBN7.21088,635,330 - 88,652,114 (-)NCBI
Rnor_6.01091,785,892 - 91,799,409 (-)NCBI
Rnor_5.01091,552,384 - 91,574,275 (-)NCBI
Sequence:
Protein RefSeqs NP_001100525 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247592 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM06285 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005074.3
RefSeq Acc Id: NP_001100525   ⟸   NM_001107055
- Peptide Label: precursor
- UniProtKB: D3ZFS0 (UniProtKB/TrEMBL),   A6HJT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247592   ⟸   XM_006247530
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1R7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005074   ⟸   ENSRNOT00000005074
Ensembl Acc Id: ENSRNOP00000071955   ⟸   ENSRNOT00000078561

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFS0-F1-model_v2 AlphaFold D3ZFS0 1-359 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 20 of 20 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23027 BioCyc
Ensembl Genes ENSRNOG00000003807 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005074.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Wnt_C UniProtKB/TrEMBL
  Wnt_grthfactor_CS UniProtKB/TrEMBL
  Wnt_SF UniProtKB/TrEMBL
KEGG Report rno:303586 UniProtKB/TrEMBL
NCBI Gene 303586 ENTREZGENE
PANTHER PTHR12027:SF84 UniProtKB/TrEMBL
  Wnt UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PhenoGen Wnt9b PhenoGen
PRINTS WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003807 RatGTEx
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A0G2K1R7 ENTREZGENE
  A6HJT0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFS0 ENTREZGENE, UniProtKB/TrEMBL
1 to 20 of 20 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Wnt9b  Wnt family member 9B  Wnt9b  wingless-type MMTV integration site family, member 9B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Wnt9b  wingless-type MMTV integration site family, member 9B  Wnt9b  wingless-type MMTV integration site 9B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Wnt9b  wingless-type MMTV integration site 9B  Wnt9b_predicted  wingless related MMTV integration site 9B (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wnt9b_predicted  wingless related MMTV integration site 9B (predicted)    wingless-type MMTV integration site 9B (predicted)  Name updated 1299863 APPROVED
2005-01-12 Wnt9b_predicted  wingless-type MMTV integration site 9B (predicted)      Symbol and Name status set to approved 70820 APPROVED