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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal basioccipital bone morphology
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Accession:MP:0000079 term browser browse the term
Definition:any structural anomaly of the basilar process of the occipital bone in the base of the cranium, frequently forming a direct part of the occipital in the adult, but usually distinct in the young
Comment:The basioccipital, exoccipital and supraoccipital bones are distinct bones in prenatal, neonatal and some early juvenile stages in most mammals. In adult organisms, these structures are fused to form the unified adult occipital bone.
Synonyms:narrow_synonym: basioccipital bone dysplasia


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abnormal basioccipital bone morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank progressive ankylosis IAGP MGI PMID:17186460 NCBI chr15:27,466,763...27,594,995
Ensembl chr15:27,466,763...27,594,995 		JBrowse link
G Arl6 ADP-ribosylation factor-like 6 IAGP MGI PMID:27170093 NCBI chr16:59,433,312...59,459,772
Ensembl chr16:59,433,312...59,459,754 		JBrowse link
G Baiap2 brain-specific angiogenesis inhibitor 1-associated protein 2 IAGP MGI PMID:28067313 NCBI chr11:119,833,762...119,897,608
Ensembl chr11:119,833,589...119,897,608 		JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:19127565 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:7585967 PMID:14660544 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433909 PMID:16330189 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G Evc EvC ciliary complex subunit 1 IAGP MGI PMID:17660199 NCBI chr 5:37,446,314...37,495,489
Ensembl chr 5:37,446,442...37,494,238 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:28123344 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxn3 forkhead box N3 IAGP MGI PMID:20691664 NCBI chr12:99,156,340...99,529,926
Ensembl chr12:99,156,337...99,529,841 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9006072 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:1680563 PMID:10529419 PMID:11528388 PMID:15367676 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:7903600 PMID:7903601 PMID:10529419 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:20498049 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:20498049 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7750651 PMID:10559481 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 IAGP MGI PMID:11790802 PMID:12379497 NCBI chr19:5,790,928...5,808,564
Ensembl chr19:5,790,932...5,808,560 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:16330189 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10572046 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:16024804 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:9153393 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 PMID:10559481 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tcf15 transcription factor 15 IAGP MGI PMID:8955271 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017 		JBrowse link
G Tmem107 transmembrane protein 107 IAGP MGI PMID:22698544 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A IAGP MGI PMID:16818445 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
absent basioccipital bone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk2 dual-specificity tyrosine phosphorylation regulated kinase 2 IAGP MGI PMID:32758357 NCBI chr10:118,691,507...118,725,144
Ensembl chr10:118,691,508...118,706,114 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:19208343 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Pgap1 post-GPI attachment to proteins 1 IAGP MGI PMID:23213481 NCBI chr 1:54,512,159...54,596,843
Ensembl chr 1:54,512,153...54,596,843 		JBrowse link
basioccipital bone hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Memo1 mediator of cell motility 1 IAGP MGI PMID:26746790 NCBI chr17:74,493,759...74,602,677
Ensembl chr17:74,506,031...74,602,516 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10449756 PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
fusion of basioccipital and basisphenoid bone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:21087601 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 IAGP MGI PMID:19383940 NCBI chr 5:108,842,051...108,854,816
Ensembl chr 5:108,840,248...108,854,790 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:16452092 PMID:16600992 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:15469978 PMID:16452092 PMID:16600992 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
small basioccipital bone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfrl1 fibroblast growth factor receptor-like 1 IAGP MGI PMID:19383940 NCBI chr 5:108,842,051...108,854,816
Ensembl chr 5:108,840,248...108,854,790 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Foxd3 forkhead box D3 IAGP MGI PMID:18367558 NCBI chr 4:99,544,536...99,546,908
Ensembl chr 4:99,544,536...99,546,859 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:18367558 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hhat hedgehog acyltransferase IAGP MGI PMID:23055936 NCBI chr 1:192,195,133...192,453,546
Ensembl chr 1:192,179,019...192,453,531 		JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IAGP MGI PMID:17950478 NCBI chr17:75,312,475...75,699,507
Ensembl chr17:75,312,563...75,699,507 		JBrowse link
G Nedd4 neural precursor cell expressed, developmentally down-regulated 4 IAGP MGI PMID:24080509 NCBI chr 9:72,569,613...72,657,133
Ensembl chr 9:72,569,628...72,657,134 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10449756 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IAGP MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A IAGP MGI PMID:16818445 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17076
    craniofacial phenotype 1669
      abnormal craniofacial morphology 1669
        abnormal craniofacial bone morphology 1046
          abnormal cranium morphology 1030
            abnormal basicranium morphology 166
              abnormal basioccipital bone morphology 45
                absent basioccipital bone 3
                fusion of basioccipital and basisphenoid bone 5
                small basioccipital bone + 12
Path 2
Term Annotations click to browse term
  mammalian phenotype 17076
    skeleton phenotype 3395
      abnormal skeleton morphology 3202
        abnormal axial skeleton morphology 1792
          abnormal craniofacial bone morphology 1046
            abnormal cranium morphology 1030
              abnormal neurocranium morphology 350
                abnormal occipital bone morphology 116
                  abnormal basioccipital bone morphology 45
                    absent basioccipital bone 3
                    fusion of basioccipital and basisphenoid bone 5
                    small basioccipital bone + 12
paths to the root