Ank (progressive ankylosis) - Rat Genome Database

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Gene: Ank (progressive ankylosis) Mus musculus
Analyze
Symbol: Ank
Name: progressive ankylosis
RGD ID: 734406
MGI Page MGI
Description: Enables inorganic diphosphate transmembrane transporter activity. Involved in cementum mineralization; diphosphate metabolic process; and gene expression. Acts upstream of or within regulation of bone mineralization. Located in plasma membrane. Is integral component of plasma membrane. Is expressed in several structures, including bone; connective tissue; olfactory epithelium; telencephalon; and vibrissa follicle. Used to study craniometaphyseal dysplasia. Human ortholog(s) of this gene implicated in autosomal dominant craniometaphyseal dysplasia and chondrocalcinosis. Orthologous to human ANKH (ANKH inorganic pyrophosphate transport regulator); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ankh; D15Ertd221; D15Ertd221e; fn54 protein; mKIAA1581; progressive ankylosis protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391527,466,763 - 27,594,995 (+)NCBIGRCm39mm39
GRCm39 Ensembl1527,466,763 - 27,594,995 (+)Ensembl
GRCm381527,466,677 - 27,594,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1527,466,677 - 27,594,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv371527,396,432 - 27,524,664 (+)NCBIGRCm37mm9NCBIm37
MGSCv361527,411,402 - 27,539,630 (+)NCBImm8
Celera1528,188,363 - 28,342,822 (+)NCBICelera
Cytogenetic Map15B1NCBI
cM Map1510.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
butanal  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlordecone  (EXP)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
diethylstilbestrol  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
genistein  (EXP)
irinotecan  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenformin  (ISO)
pirinixic acid  (EXP)
progesterone  (EXP)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sulforaphane  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal articular cartilage morphology  (IAGP)
abnormal auditory bulla morphology  (IAGP)
abnormal basioccipital bone morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone structure  (IAGP)
abnormal cartilage morphology  (IAGP)
abnormal cementum morphology  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal circulating enzyme level  (IAGP)
abnormal cranial foramen morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal digit morphology  (IAGP)
abnormal femur morphology  (IAGP)
abnormal foramen magnum morphology  (IAGP)
abnormal gait  (IAGP)
abnormal intervertebral disk morphology  (IAGP)
abnormal ion homeostasis  (IAGP)
abnormal joint morphology  (IAGP)
abnormal ligament morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal middle ear ossicle morphology  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal posture  (IAGP)
abnormal sesamoid bone of gastrocnemius morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal synovial joint cavity morphology  (IAGP)
abnormal temporal bone petrous part morphology  (IAGP)
abnormal tendon morphology  (IAGP)
abnormal tooth hard tissue morphology  (IAGP)
abnormal transverse acetabular ligament morphology  (IAGP)
absent paranasal sinus  (IAGP)
arthritis  (IAGP)
calcified aorta  (IAGP)
calcified intervertebral disk  (IAGP)
calcified joint  (IAGP)
calcified tendon  (IAGP)
club-shaped femur  (IAGP)
craniofacial hyperostosis  (IAGP)
decreased body length  (IAGP)
decreased body weight  (IAGP)
decreased compact bone thickness  (IAGP)
decreased grip strength  (IAGP)
decreased joint mobility  (IAGP)
decreased trabecular bone connectivity density  (IAGP)
decreased trabecular bone volume  (IAGP)
foramen magnum stenosis  (IAGP)
fused joints  (IAGP)
fusion of middle ear ossicles  (IAGP)
hyperostosis  (IAGP)
increased bone mineral content  (IAGP)
increased bone mineral density  (IAGP)
increased circulating alkaline phosphatase level  (IAGP)
increased diameter of femur  (IAGP)
incudomalleolar fusion  (IAGP)
kyphosis  (IAGP)
mandibular hyperostosis  (IAGP)
premature death  (IAGP)
reduced female fertility  (IAGP)
reduced male fertility  (IAGP)
short femur  (IAGP)
thick neurocranium  (IAGP)
References

Additional References at PubMed
PMID:1659102   PMID:2541245   PMID:2805429   PMID:3004514   PMID:3175755   PMID:3190783   PMID:3213824   PMID:6095872   PMID:7276519   PMID:8889548   PMID:9002021   PMID:9635372  
PMID:10349636   PMID:10813297   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11326338   PMID:11953986   PMID:12056852   PMID:12477932   PMID:12817751   PMID:15039209  
PMID:15489334   PMID:15611280   PMID:15625282   PMID:15833911   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16869722   PMID:17186460   PMID:17560335   PMID:17638573   PMID:17762177  
PMID:17950726   PMID:18187567   PMID:18331719   PMID:18728347   PMID:19257826   PMID:19338977   PMID:19419319   PMID:19910700   PMID:20200976   PMID:20200993   PMID:21149338   PMID:21389671  
PMID:21488756   PMID:21490328   PMID:21677750   PMID:21788370   PMID:21856950   PMID:21873635   PMID:22003394   PMID:22318228   PMID:22421045   PMID:22675556   PMID:23160629   PMID:23390527  
PMID:23895994   PMID:24663682   PMID:25428889   PMID:28135291   PMID:28286238   PMID:28866368   PMID:29174564   PMID:29313816   PMID:30356088   PMID:31059863   PMID:31064775   PMID:32224162  
PMID:32639996  


Genomics

Comparative Map Data
Ank
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391527,466,763 - 27,594,995 (+)NCBIGRCm39mm39
GRCm39 Ensembl1527,466,763 - 27,594,995 (+)Ensembl
GRCm381527,466,677 - 27,594,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1527,466,677 - 27,594,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv371527,396,432 - 27,524,664 (+)NCBIGRCm37mm9NCBIm37
MGSCv361527,411,402 - 27,539,630 (+)NCBImm8
Celera1528,188,363 - 28,342,822 (+)NCBICelera
Cytogenetic Map15B1NCBI
cM Map1510.23NCBI
ANKH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl514,704,800 - 14,871,778 (-)EnsemblGRCh38hg38GRCh38
GRCh38514,704,800 - 14,871,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37514,704,909 - 14,871,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36514,762,019 - 14,924,876 (-)NCBINCBI36hg18NCBI36
Build 34514,762,018 - 14,924,876NCBI
Celera514,728,867 - 14,895,594 (-)NCBI
Cytogenetic Map5p15.2NCBI
HuRef514,677,712 - 14,844,731 (-)NCBIHuRef
CHM1_1514,704,654 - 14,871,772 (-)NCBICHM1_1
Ankh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2278,153,027 - 78,280,181 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl278,153,026 - 78,280,187 (+)Ensembl
Rnor_6.0280,131,563 - 80,256,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl280,131,563 - 80,256,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0299,796,579 - 99,921,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4279,289,427 - 79,418,518 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1279,234,387 - 79,363,480 (+)NCBI
Celera273,782,876 - 73,934,310 (+)NCBICelera
Cytogenetic Map2q22NCBI
Ankh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554263,992,671 - 4,130,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554263,992,671 - 4,130,754 (-)NCBIChiLan1.0ChiLan1.0
ANKH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1514,849,497 - 15,015,206 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl514,855,914 - 14,917,729 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0515,014,019 - 15,175,467 (-)NCBIMhudiblu_PPA_v0panPan3
ANKH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1488,149,250 - 88,263,926 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl488,149,257 - 88,272,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha487,670,608 - 87,785,793 (+)NCBI
ROS_Cfam_1.0488,877,936 - 88,993,145 (+)NCBI
UMICH_Zoey_3.1488,304,136 - 88,419,117 (+)NCBI
UNSW_CanFamBas_1.0488,546,753 - 88,661,820 (+)NCBI
UU_Cfam_GSD_1.0489,403,928 - 89,519,108 (+)NCBI
Ankh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213232,927,281 - 233,060,862 (+)NCBI
SpeTri2.0NW_0049366651,520,800 - 1,654,388 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,105,165 - 4,271,171 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,095,582 - 4,271,073 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2164,444,997 - 4,610,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1414,401,681 - 14,559,342 (-)NCBI
ChlSab1.1 Ensembl414,408,116 - 14,559,454 (-)Ensembl
Vero_WHO_p1.0NW_02366606413,973,098 - 14,126,427 (+)NCBI
Ankh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475111,716,369 - 11,847,726 (-)NCBI

Position Markers
MT3505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,582,331 - 27,582,471UniSTSGRCm38
MGSCv371527,512,086 - 27,512,226UniSTSGRCm37
Celera1528,330,244 - 28,330,384UniSTS
Cytogenetic Map15B1UniSTS
cM Map1515.6UniSTS
Whitehead Genetic1510.9UniSTS
D15Mit164.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,582,231 - 27,582,341UniSTSGRCm38
MGSCv371527,511,986 - 27,512,096UniSTSGRCm37
Celera1528,330,144 - 28,330,254UniSTS
Cytogenetic Map15B1UniSTS
cM Map1515.6UniSTS
cM Map15 UniSTS
Whitehead Genetic1510.9UniSTS
D15Mit20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,582,373 - 27,582,523UniSTSGRCm38
MGSCv371527,512,128 - 27,512,278UniSTSGRCm37
Celera1528,330,286 - 28,330,436UniSTS
Cytogenetic Map15B1UniSTS
cM Map1514.0UniSTS
Whitehead Genetic1510.9UniSTS
Whitehead/MRC_RH15258.89UniSTS
Whitehead_YAC15 UniSTS
D15Mit94  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,443,957 - 27,444,106UniSTSGRCm38
MGSCv371527,373,712 - 27,373,861UniSTSGRCm37
Celera1528,191,810 - 28,191,957UniSTS
Cytogenetic Map15B1UniSTS
cM Map1529.0UniSTS
Whitehead Genetic1532.8UniSTS
Whitehead_YAC15 UniSTS
C78987  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,593,881 - 27,593,967UniSTSGRCm38
MGSCv371527,523,636 - 27,523,722UniSTSGRCm37
Celera1528,341,794 - 28,341,880UniSTS
Cytogenetic Map15B1UniSTS
cM Map1514.4UniSTS
Whitehead/MRC_RH15254.64UniSTS
UniSTS:237276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,499,656 - 27,499,983UniSTSGRCm38
MGSCv371527,429,411 - 27,429,738UniSTSGRCm37
Celera1528,247,543 - 28,247,870UniSTS
Cytogenetic Map15B1UniSTS
cM Map1514.4UniSTS
RH126011  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,509,354 - 27,509,589UniSTSGRCm38
MGSCv371527,439,109 - 27,439,344UniSTSGRCm37
Celera1528,257,331 - 28,257,566UniSTS
Cytogenetic Map15B1UniSTS
cM Map158.9UniSTS
Whitehead/MRC_RH15257.67UniSTS
RH126477  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381527,594,159 - 27,594,404UniSTSGRCm38
MGSCv371527,523,914 - 27,524,159UniSTSGRCm37
Celera1528,342,072 - 28,342,317UniSTS
Cytogenetic Map15B1UniSTS
cM Map1514.4UniSTS
cM Map158.9UniSTS
Whitehead/MRC_RH15257.67UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218650Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15344490771325689Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346456637464566Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562040839620528Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15610000038000000Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15610000050900000Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15610000068400000Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15610000071600000Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15610000072600000Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15680000045100000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15720000055400000Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15760000055400000Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15760000059400000Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15810000038900000Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15810000047800000Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927293643448484Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927293643448484Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927293656323454Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
1302165Yv_myellow value (mouse)Not determined151384686047847002Mouse
1301020Pheo_mpheomelanin (mouse)Not determined151384686047847002Mouse
1301951Eila3_methanol induced locomotor activity 3 (mouse)Not determined151492744148927610Mouse
4141423Nstr2_mnerve sheath tumor resistance QTL 2 (mouse)Not determined1492744148927610Mouse
1302007Bbaa14_mB.burgdorferi-associated arthritis 14 (mouse)Not determined151492744148927610Mouse
1301499Bdln2_mbody length 2 (mouse)Not determined151564519749645324Mouse
12859288Criq1_mCitrobacter rodentium infection QTL 1 (mouse)151603380850033808Mouse
26884423Zlq10_mzygomatic length QTL 10, 16 week (mouse)152060000050900000Mouse
13801027Toa1_mtesticular oocyte appearance 1 (mouse)152080726628493921Mouse
14928313Manh78_mmandible shape 78 (mouse)152148439755484397Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152273036956730369Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2302961857029764Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152459917658599409Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152543241059432532Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2562158259621582Mouse
1301063Dob4_mdietary obesity 4 (mouse)4.3Body weightmesenteric152603559437781057Mouse
1301760Dob9_mdietary obesity 9 (mouse)Body fat amountadiposity index152603559437781057Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152644838460448484Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152644838460448484Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162644838460448484Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152644838460448484Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660000066500000Mouse
14700788Mencq9_mmeniscus calcification QTL 9 (mouse)152731600027624000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:753
Count of miRNA genes:471
Interacting mature miRNAs:569
Transcripts:ENSMUST00000022875, ENSMUST00000134004
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000022875   ⟹   ENSMUSP00000022875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1527,466,763 - 27,594,995 (+)Ensembl
GRCm38.p6 Ensembl1527,466,677 - 27,594,909 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134004
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1527,571,533 - 27,594,538 (+)Ensembl
GRCm38.p6 Ensembl1527,571,447 - 27,594,452 (+)Ensembl
RefSeq Acc Id: NM_020332   ⟹   NP_065065
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391527,466,763 - 27,594,995 (+)NCBI
GRCm381527,466,677 - 27,594,909 (+)ENTREZGENE
MGSCv371527,396,432 - 27,524,664 (+)RGD
Celera1528,214,608 - 28,342,822 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_065065   ⟸   NM_020332
- UniProtKB: Q9JHZ2 (UniProtKB/Swiss-Prot),   Q3UG85 (UniProtKB/TrEMBL),   Q8C438 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000022875   ⟸   ENSMUST00000022875

Promoters
RGD ID:6825764
Promoter ID:MM_KWN:18152
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour
Transcripts:OTTMUST00000065059
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361527,395,896 - 27,396,562 (+)MPROMDB
RGD ID:8683498
Promoter ID:EPDNEW_M19779
Type:initiation region
Name:Ank_1
Description:Mus musculus progressive ankylosis , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19780  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381527,466,686 - 27,466,746EPDNEW
RGD ID:8683500
Promoter ID:EPDNEW_M19780
Type:initiation region
Name:Ank_2
Description:Mus musculus progressive ankylosis , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19779  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381527,466,843 - 27,466,903EPDNEW
RGD ID:6825771
Promoter ID:MM_KWN:18155
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007VJP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361527,500,491 - 27,501,392 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3045421 AgrOrtholog
Ensembl Genes ENSMUSG00000022265 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000022875 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022875 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro ANKH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11732 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:3045421 ENTREZGENE
NCBI Gene 11732 ENTREZGENE
PANTHER PTHR28384 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANKH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ank PhenoGen
UniProt ANKH_MOUSE UniProtKB/Swiss-Prot
  Q3UG85 ENTREZGENE, UniProtKB/TrEMBL
  Q8C438 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHZ2 ENTREZGENE
UniProt Secondary O35138 UniProtKB/Swiss-Prot
  O35139 UniProtKB/Swiss-Prot