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ONTOLOGY REPORT - ANNOTATIONS


Term:striatum development
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Accession:GO:0021756 term browser browse the term
Definition:The progression of the striatum over time from its initial formation until its mature state. The striatum is a region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.
Synonyms:exact_synonym: neostriatum development;   striate nucleus development


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striatum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr 1:220,146,084...220,165,545
Ensembl chr 1:220,147,327...220,165,678
JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr19:11,385,921...11,421,523
Ensembl chr19:11,386,024...11,421,498
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) RGD PMID:18179893 NCBI chr 4:74,700,539...77,025,463 JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497)
GO_REF:0000107
RGD
Ensembl
PMID:17360497, PMID:22015925 GO_REF:0000107 MGI:3703826, RGD:7248608 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Drd2 dopamine receptor D2 IEP RGD PMID:22015925 RGD:7248608 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Foxp1 forkhead box P1 IEP RGD PMID:12815709 RGD:11536004 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within ISO MGI:1857299 (MGI:1321418|PMID:9886073) RGD PMID:9886073 MGI:1321418 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177751|MGI:2177753|MGI:2177757 (MGI:1926548|PMID:11030759), (MGI:3719127|PMID:17715336) RGD PMID:11030759 PMID:17715336 MGI:1926548 MGI:3719127 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IEP RGD PMID:18272292 RGD:13462055 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr 3:129,866,542...129,885,213
Ensembl chr 3:129,866,545...129,884,810
JBrowse link
G Ogdh oxoglutarate dehydrogenase acts_upstream_of_or_within ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:1857851 (MGI:3789439|PMID:18443282) RGD PMID:18443282 MGI:3789439 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181426|MGI:5583885 (MGI:5585168|PMID:24844465)
Ensembl
RGD
PMID:24844465 GO_REF:0000107 MGI:5585168 NCBI chr17:13,555,348...13,586,595
Ensembl chr17:13,555,349...13,586,554
JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (MGI:3664848|PMID:17035536) RGD PMID:17035536 MGI:3664848 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
G Slitrk5 SLIT and NTRK-like family, member 5 acts_upstream_of_or_within ISO MGI:4459459 (MGI:4454727|PMID:20418887) RGD PMID:20418887 MGI:4454727 NCBI chr15:96,817,907...96,826,760
Ensembl chr15:96,821,832...96,826,653
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) RGD PMID:11872605 NCBI chr 4:41,364,441...41,944,685
Ensembl chr 4:41,364,441...41,942,023
JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3512079 (MGI:3701419|PMID:17207476)
Ensembl
RGD
PMID:17207476 GO_REF:0000107 MGI:3701419 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) RGD PMID:11872605 NCBI chr 4:41,364,441...41,944,685
Ensembl chr 4:41,364,441...41,942,023
JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B acts_upstream_of_or_within ISO MGI:2663971 (MGI:3773576|PMID:18199763) RGD PMID:18199763 MGI:3773576 NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:25804741) RGD PMID:25804741 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4948759|PMID:21423165)
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:21423165 GO_REF:0000024 GO_REF:0000107 MGI:4948759 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Zswim6 zinc finger, SWIM-type containing 6 involved_in ISO (MGI:6140923|PMID:28433741) RGD PMID:28433741 MGI:6140923 NCBI chr 2:38,978,042...39,042,886
Ensembl chr 2:38,979,865...39,007,976
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        striatum development 24
          caudate nucleus development 1
          nucleus accumbens development 1
          putamen development 1
          striatal medium spiny neuron differentiation 4
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        multicellular organism development 5747
          system development 5290
            nervous system development 2718
              central nervous system development 1266
                brain development 972
                  forebrain development 509
                    telencephalon development 341
                      subpallium development 30
                        striatum development 24
                          caudate nucleus development 1
                          nucleus accumbens development 1
                          putamen development 1
                          striatal medium spiny neuron differentiation 4
paths to the root