ONTOLOGY REPORT - ANNOTATIONS
Term: striatum development
Accession: GO:0021756
browse the term
Definition: The progression of the striatum over time from its initial formation until its mature state. The striatum is a region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.
Synonyms: exact_synonym: neostriatum development; striate nucleus development
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Bbs1
Bardet-Biedl syndrome 1
acts_upstream_of_or_within
ISO
MGI:3767672 (MGI:3767384|PMID:18032602)
RGD
PMID:18032602
MGI:3767384
NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
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Bbs2
Bardet-Biedl syndrome 2
acts_upstream_of_or_within
ISO
MGI:3521669 (MGI:3767384|PMID:18032602)
RGD
PMID:18032602
MGI:3767384
NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993
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Bbs4
Bardet-Biedl syndrome 4
acts_upstream_of_or_within
ISO
MGI:3045473 (MGI:3767384|PMID:18032602)
RGD
PMID:18032602
MGI:3767384
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
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Cntnap2
contactin associated protein 2
involved_in
ISO
(PMID:18179893)
RGD
PMID:18179893
NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
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Drd1
dopamine receptor D1
involved_in acts_upstream_of_or_within
IEP IEA ISO
GO_REF:0000107 MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497)
Ensembl RGD
PMID:17360497 PMID:22015925
GO_REF:0000107 MGI:3703826 , RGD:7248608
NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
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Drd2
dopamine receptor D2
IEP
RGD
PMID:22015925
RGD:7248608
NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
IEP
RGD
PMID:18565716
RGD:13204724
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Foxp1
forkhead box P1
IEP
RGD
PMID:12815709
RGD:11536004
NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258
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Hprt1
hypoxanthine phosphoribosyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1857299 (MGI:1321418|PMID:9886073)
RGD
PMID:9886073
MGI:1321418
NCBI chr X:132,736,175...132,768,149
Ensembl chr X:132,736,096...132,768,154
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Htt
huntingtin
acts_upstream_of_or_within
ISO
MGI:2177751|MGI:2177753|MGI:2177757 (MGI:1926548|PMID:11030759), (MGI:3719127|PMID:17715336)
RGD
PMID:11030759 PMID:17715336
MGI:1926548 MGI:3719127
NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
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Lrrk2
leucine-rich repeat kinase 2
IEP
RGD
PMID:18272292
RGD:13462055
NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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Mecp2
methyl CpG binding protein 2
IEP
RGD
PMID:12605461
RGD:12790706
NCBI chr X:151,781,177...151,844,687
Ensembl chr X:151,789,930...151,844,689
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Mkks
MKKS centrosomal shuttling protein
acts_upstream_of_or_within
ISO
MGI:3526444 (MGI:3767384|PMID:18032602)
RGD
PMID:18032602
MGI:3767384
NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162
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Ogdh
oxoglutarate dehydrogenase
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
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Rarb
retinoic acid receptor, beta
acts_upstream_of_or_within
ISO
MGI:1857851 (MGI:3789439|PMID:18443282)
RGD
PMID:18443282
MGI:3789439
NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
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Secisbp2
SECIS binding protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2181426|MGI:5583885 (MGI:5585168|PMID:24844465)
Ensembl RGD
PMID:24844465
GO_REF:0000107 MGI:5585168
NCBI chr17:13,538,513...13,569,573
Ensembl chr17:13,538,513...13,569,523
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Slc7a11
solute carrier family 7 member 11
acts_upstream_of_or_within
ISO
MGI:1857061 (MGI:3664848|PMID:17035536)
RGD
PMID:17035536
MGI:3664848
NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
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Slitrk5
SLIT and NTRK-like family, member 5
acts_upstream_of_or_within
ISO
MGI:4459459 (MGI:4454727|PMID:20418887)
RGD
PMID:20418887
MGI:4454727
NCBI chr15:88,848,123...88,858,809
Ensembl chr15:88,847,535...88,856,836
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Foxp2
forkhead box P2
involved_in
ISO
(PMID:11872605)
RGD
PMID:11872605
NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
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Aldh1a3
aldehyde dehydrogenase 1 family, member A3
acts_upstream_of_or_within involved_in
ISO IEA
MGI:3512079 (MGI:3701419|PMID:17207476) GO_REF:0000107
RGD Ensembl
PMID:17207476
GO_REF:0000107 MGI:3701419
NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
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Foxp2
forkhead box P2
involved_in
ISO
(PMID:11872605)
RGD
PMID:11872605
NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
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Bcl11b
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
MGI:2663971 (MGI:3773576|PMID:18199763)
RGD
PMID:18199763
MGI:3773576
NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224
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Inhba
inhibin subunit beta A
involved_in
ISO
(PMID:25804741)
RGD
PMID:25804741
NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
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Shank3
SH3 and multiple ankyrin repeat domains 3
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (MGI:4948759|PMID:21423165)
Ensembl BHF-UCL RGD
PMID:21423165
GO_REF:0000024 GO_REF:0000107 MGI:4948759
NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374
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Zswim6
zinc finger, SWIM-type containing 6
involved_in
ISO
(MGI:6140923|PMID:28433741)
RGD
PMID:28433741
MGI:6140923
NCBI chr 2:39,211,131...39,378,877
Ensembl chr 2:39,212,949...39,378,924
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