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Gene: Bcl11b (BAF chromatin remodeling complex subunit BCL11B) Rattus norvegicus
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Symbol: Bcl11b
Name: BAF chromatin remodeling complex subunit BCL11B
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Predicted to be involved in several processes, including animal organ development; cell morphogenesis involved in differentiation; and lymphoid lineage cell migration into thymus. Predicted to localize to the neuron projection and nucleus. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human BCL11B (BAF chromatin remodeling complex subunit BCL11B); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: B-cell CLL/lymphoma 11B; B-cell CLL/lymphoma 11B (zinc finger protein); B-cell leukemia/lymphoma 11B; B-cell lymphoma/leukemia 11B; BCL11B, BAF complex component; COUP-TF-interacting protein 2 long form; Ctip2; LOC314423
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06131,834,097 - 131,927,251 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6131,834,097 - 131,926,272 (-)Ensembl
Rnor_5.06141,004,477 - 141,097,643 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46132,292,671 - 132,384,572 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16132,296,789 - 132,389,378 (-)NCBI
Celera6124,393,881 - 124,486,186 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Bcl11b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311128
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.