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ONTOLOGY REPORT - ANNOTATIONS

Term:short-chain fatty acid metabolic process
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Accession:GO:0046459 term browser browse the term
Definition:The chemical reactions and pathways involving a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Comment:While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
Synonyms:exact_synonym: short-chain fatty acid metabolism


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short-chain fatty acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 involved_in ISO (PMID:16940157)
(MGI:3663233|PMID:16940157)		 RGD PMID:16940157 MGI:3663233 NCBI chr 6:103,668,699...103,674,037
Ensembl chr 6:103,668,753...103,673,917 		JBrowse link
G Acot9 acyl-CoA thioesterase 9 involved_in ISO (MGI:6718236|PMID:23864032) RGD PMID:23864032 MGI:6718236 NCBI chr  X:40,073,197...40,123,573
Ensembl chr  X:40,064,810...40,123,559 		JBrowse link
G Crat carnitine O-acetyltransferase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23485643)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23485643 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:13,675,684...13,689,282
Ensembl chr 3:13,675,684...13,689,255 		JBrowse link
2-oxobutyrate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 involved_in ISO
IBA
IEA		 (MGI:3690523|PMID:17034760)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:17034760 GO_REF:0000033 GO_REF:0000107 MGI:3690523 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017 		JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA 2-hydroxylase IDA RGD PMID:10588950 RGD:727286 NCBI chr17:73,329,461...73,346,359
Ensembl chr17:73,329,082...73,346,409 		JBrowse link
acetoacetic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960 (PMID:7665913) RGD PMID:7665913 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
butyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3968063 GO_REF:0000033, RGD:2317678 NCBI chr12:41,493,650...41,502,897
Ensembl chr12:41,493,626...41,502,898 		JBrowse link
butyrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 NOT|involved_in ISO (PMID:16940157) RGD PMID:16940157 NCBI chr 6:103,668,699...103,674,037
Ensembl chr 6:103,668,753...103,673,917 		JBrowse link
propionate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 IDA RGD PMID:4334748 RGD:2317572 NCBI chr 3:139,450,383...139,500,325
Ensembl chr 3:139,450,383...139,500,325 		JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 IDA RGD PMID:4334748 RGD:2317572 NCBI chr 3:144,003,808...144,047,452
Ensembl chr 3:144,004,336...144,059,675 		JBrowse link
propionate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
propionate metabolic process, methylmalonyl pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-CoA mutase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:19,928,720...19,956,985
Ensembl chr 9:19,928,727...19,957,046 		JBrowse link
short-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in ISO (PMID:15668256) RGD PMID:15668256 NCBI chr15:9,210,443...9,215,852
Ensembl chr15:9,210,547...9,214,558 		JBrowse link
short-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within ISO (PMID:16804080) RGD PMID:16804080 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      cellular metabolic process 9554
        cellular lipid metabolic process 1074
          fatty acid metabolic process 454
            short-chain fatty acid metabolic process 14
              2-oxobutyrate metabolic process + 2
              acetoacetic acid metabolic process + 1
              butyrate metabolic process + 2
              glutamate catabolic process to 4-hydroxybutyrate 0
              propionate metabolic process + 5
              short-chain fatty acid biosynthetic process + 4
              short-chain fatty acid catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      cellular metabolic process 9554
        organic acid metabolic process 1021
          oxoacid metabolic process 1010
            carboxylic acid metabolic process 995
              monocarboxylic acid metabolic process 729
                fatty acid metabolic process 454
                  short-chain fatty acid metabolic process 14
                    2-oxobutyrate metabolic process + 2
                    acetoacetic acid metabolic process + 1
                    butyrate metabolic process + 2
                    glutamate catabolic process to 4-hydroxybutyrate 0
                    propionate metabolic process + 5
                    short-chain fatty acid biosynthetic process + 4
                    short-chain fatty acid catabolic process + 5
paths to the root