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ONTOLOGY REPORT - ANNOTATIONS

Term:short-chain fatty acid catabolic process
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Accession:GO:0019626 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Comment:While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
Synonyms:exact_synonym: short-chain fatty acid breakdown;   short-chain fatty acid catabolism;   short-chain fatty acid degradation
 xref: MetaCyc:ACETOACETATE-DEG-PWY;   Reactome:R-HSA-71032 "Propionyl-CoA catabolism"


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short-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within ISO (PMID:16804080) RGD PMID:16804080 NCBI chr19:30,046,494...30,085,039
Ensembl chr19:30,046,449...30,085,449 		JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA 2-hydroxylase IDA RGD PMID:10588950 RGD:727286 NCBI chr17:78,238,747...78,255,645
Ensembl chr17:78,238,747...78,255,645 		JBrowse link
butyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:3968063 GO_REF:0000033, RGD:2317678 NCBI chr12:47,154,259...47,163,580
Ensembl chr12:47,154,276...47,164,103 		JBrowse link
propionate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:182,348,572...182,354,521
Ensembl chr 3:182,348,572...182,354,561 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:32,997,853...33,006,691
Ensembl chr15:32,997,834...33,016,864 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        catabolic process 2936
          lipid catabolic process 366
            fatty acid catabolic process 109
              short-chain fatty acid catabolic process 5
                2-oxobutyrate catabolic process 1
                acetoacetic acid catabolic process 0
                butyrate catabolic process 1
                propionate catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        small molecule metabolic process 1860
          organic acid metabolic process 1032
            oxoacid metabolic process 1022
              carboxylic acid metabolic process 1008
                carboxylic acid catabolic process 244
                  monocarboxylic acid catabolic process 135
                    fatty acid catabolic process 109
                      short-chain fatty acid catabolic process 5
                        2-oxobutyrate catabolic process 1
                        acetoacetic acid catabolic process 0
                        butyrate catabolic process 1
                        propionate catabolic process + 2
paths to the root